MMP13 — 297 ClinVar variants

All ClinVar germline MMP13 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 135 flagged for review →

9 Pathogenic · 3 Pathogenic/Likely pathogenic · 7 Likely pathogenic · 19 Conflicting · 29 Benign · 10 Benign/Likely benign · 73 Likely benign · 147 Uncertain significance

Full MMP13 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 135

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 6

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 79

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 50

The independent predictors disagree with each other — read with care.

All MMP13 variants

Pathogenic 9

Pathogenic/Likely pathogenic 3

  • c.1052-1G>C Multiple submitters
  • p.Asp258fs Multiple submitters MMP13-related disorder
  • p.Trp207Gly Multiple submitters metaphyseal chondrodysplasia, Spahr type

Likely pathogenic 7

Conflicting classifications of pathogenicity 19

Benign 29

Benign/Likely benign 10

  • c.363-17C>G Multiple submitters
  • c.799+7C>T Multiple submitters metaphyseal anadysplasia
  • c.*314T>C Multiple submitters spondyloepimetaphyseal dysplasia, Missouri type
  • p.Asn445= Multiple submitters
  • p.Asp158Asn Multiple submitters metaphyseal anadysplasia ⚠
  • p.Asp390Gly Multiple submitters metaphyseal anadysplasia ⚠
  • p.Thr247= Multiple submitters metaphyseal anadysplasia
  • p.Tyr360= Multiple submitters metaphyseal chondrodysplasia, Spahr type
  • c.*426A>G Single submitter spondyloepimetaphyseal dysplasia, Missouri type
  • c.*628A>G Single submitter spondyloepimetaphyseal dysplasia, Missouri type

Likely benign 73

Uncertain significance 147