MSRB3 — 128 ClinVar variants
All ClinVar germline MSRB3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 49 flagged for review →
2 Pathogenic · 1 Pathogenic/Likely pathogenic · 7 Likely pathogenic · 8 Conflicting · 9 Benign · 5 Benign/Likely benign · 39 Likely benign · 57 Uncertain significance
Full MSRB3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 49
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
MSRB3 p.Ala175Thr
Conflicting
Single submitter
Inborn genetic diseases
- MSRB3 p.Pro177Leu Conflicting Single submitter
Predictors lean, ClinVar uncertain 32
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
MSRB3 c.-118C>G
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
MSRB3 c.-130C>T
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
MSRB3 p.Ala162Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
- MSRB3 p.Ala168Thr Uncertain significance Multiple submitters
-
MSRB3 p.Arg144His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
MSRB3 p.Asn107Asp
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
MSRB3 p.Lys31Glu
Uncertain significance
Multiple submitters
Inborn genetic diseases
- MSRB3 p.Ser154Leu Uncertain significance Multiple submitters
-
MSRB3 p.Ser172Gly
Uncertain significance
Multiple submitters
Inborn genetic diseases
- MSRB3 c.-123G>T Uncertain significance Single submitter
- MSRB3 c.-132C>A Uncertain significance Single submitter
-
MSRB3 c.-75C>T
Uncertain significance
Single submitter
Inborn genetic diseases
- MSRB3 c.-76G>A Uncertain significance Single submitter
-
MSRB3 c.-76G>T
Uncertain significance
Single submitter
Inborn genetic diseases
-
MSRB3 p.Ala156Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
MSRB3 p.Ala168Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
MSRB3 p.Ala178Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- MSRB3 p.Arg123Ser Uncertain significance Single submitter
-
MSRB3 p.Asp181Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
MSRB3 p.Asp73Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
MSRB3 p.Cys128Tyr
Uncertain significance
Single submitter
autosomal recessive nonsyndromic hearing loss 74
-
MSRB3 p.Cys151Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
MSRB3 p.Gln41Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
MSRB3 p.Gln41Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
MSRB3 p.Glu57Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
MSRB3 p.Glu61Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- MSRB3 p.Gly147Arg Uncertain significance Single submitter
- MSRB3 p.Gly59Glu Uncertain significance Single submitter
- MSRB3 p.Gly96Asp Uncertain significance Single submitter
-
MSRB3 p.Ile76Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
MSRB3 p.Ser176Asn
Uncertain significance
Single submitter
Inborn genetic diseases
- MSRB3 p.Ser95Thr Uncertain significance Single submitter
Predictors split 15
The independent predictors disagree with each other — read with care.
-
MSRB3 c.-118C>A
Uncertain significance
Multiple submitters
Inborn genetic diseases
- MSRB3 c.-118C>T Benign/Likely benign Multiple submitters
-
MSRB3 p.Asp30Gly
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
MSRB3 p.Ser27Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
MSRB3 c.-100C>T
Uncertain significance
Single submitter
Inborn genetic diseases
-
MSRB3 c.-67G>C
Conflicting
Single submitter
Inborn genetic diseases
-
MSRB3 c.-96G>A
Uncertain significance
Single submitter
Inborn genetic diseases
- MSRB3 p.Asp104Asn Uncertain significance Single submitter
-
MSRB3 p.Gly96Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- MSRB3 p.Phe113Leu Uncertain significance Single submitter
- MSRB3 p.Pro49Thr Uncertain significance Single submitter
- MSRB3 p.Ser129Cys Uncertain significance Single submitter
- MSRB3 p.Ser27Trp Uncertain significance Single submitter
-
MSRB3 p.Thr69Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- MSRB3 p.Tyr119Cys Uncertain significance Single submitter
All MSRB3 variants
Pathogenic 2
- c.391-1G>A Single submitter autosomal recessive nonsyndromic hearing loss 74
- p.Arg19Ter No assertion criteria autosomal recessive nonsyndromic hearing loss 74
Pathogenic/Likely pathogenic 1
- p.Cys82Gly Multiple submitters autosomal recessive nonsyndromic hearing loss 74
Likely pathogenic 7
- c.-147T>G Multiple submitters autosomal recessive nonsyndromic hearing loss 74
- c.185+1G>T Single submitter
- c.264-1G>A Single submitter Rare genetic deafness
- c.293-2A>G Single submitter autosomal recessive nonsyndromic hearing loss 74
- p.Gly98Cys Single submitter autosomal recessive nonsyndromic hearing loss 74
- p.Tyr150Ter Single submitter autosomal recessive nonsyndromic hearing loss 74
- p.Gly136Arg No assertion criteria autosomal recessive nonsyndromic hearing loss 74
Conflicting classifications of pathogenicity 8
- c.76+7G>T Single submitter
- c.77-2A>G Single submitter autosomal recessive nonsyndromic hearing loss 74
- c.-118del Single submitter
- c.-147T>C Single submitter
- c.-67G>C Single submitter Inborn genetic diseases ⚠
- p.Ala162= Single submitter
- p.Ala175Thr Single submitter Inborn genetic diseases ⚠
- p.Pro177Leu Single submitter ⚠
Benign 9
- c.185+110A>G Multiple submitters
- c.292+69C>T Multiple submitters
- c.293-6T>C Multiple submitters
- c.391-36C>T Multiple submitters
- c.-139C>A Multiple submitters
- p.Tyr119= Multiple submitters
- c.263+265G>A Single submitter
- c.390+101G>A Single submitter
- c.390+18G>T Single submitter
Benign/Likely benign 5
Likely benign 39
- c.-110C>T Multiple submitters
- c.-122C>T Multiple submitters
- c.-95C>T Multiple submitters
- p.Ala183= Multiple submitters Inborn genetic diseases
- p.Gly66= Multiple submitters
- p.Lys78= Multiple submitters
- p.Pro161= Multiple submitters
- p.Ser27= Multiple submitters
- p.Thr114= Multiple submitters
- c.185+10G>A Single submitter
- c.185+17T>G Single submitter
- c.185+303G>A Single submitter
- c.185+7T>A Single submitter
- c.263+20A>G Single submitter
- c.293-109A>G Single submitter
- c.293-9G>A Single submitter
- c.390+10T>C Single submitter
- c.390+237T>A Single submitter
- c.391-12C>T Single submitter
- c.76+13T>C Single submitter
- c.77-311del Single submitter
- c.-51-341C>T Single submitter
- c.-52+18T>A Single submitter
- c.-52+8C>G Single submitter
- c.-77C>G Single submitter
- p.Ala168= Single submitter
- p.Asn107= Single submitter
- p.Glu109= Single submitter
- p.Gly120= Single submitter
- p.His103= Single submitter
- p.Leu50= Single submitter
- p.Lys58= Single submitter
- p.Pro100= Single submitter
- p.Pro24= Single submitter
- p.Pro74= Single submitter
- p.Ser154= Single submitter
- p.Ser95= Single submitter
- p.Thr167Ala Single submitter Inborn genetic diseases
- p.Val174= Single submitter
Uncertain significance 57
- c.-118C>A Multiple submitters Inborn genetic diseases ⚠
- c.-118C>G Multiple submitters Inborn genetic diseases ⚠
- c.-130C>T Multiple submitters Inborn genetic diseases ⚠
- p.Ala162Val Multiple submitters Inborn genetic diseases ⚠
- p.Ala168Thr Multiple submitters ⚠
- p.Arg144His Multiple submitters Inborn genetic diseases ⚠
- p.Arg29_Cys34del Multiple submitters
- p.Asn107Asp Multiple submitters Inborn genetic diseases ⚠
- p.Asp30Gly Multiple submitters Inborn genetic diseases ⚠
- p.Lys31Glu Multiple submitters Inborn genetic diseases ⚠
- p.Ser154Leu Multiple submitters ⚠
- p.Ser172Gly Multiple submitters Inborn genetic diseases ⚠
- p.Ser27Leu Multiple submitters Inborn genetic diseases ⚠
- c.264-5T>C Single submitter
- c.391-7C>G Single submitter
- c.-100C>T Single submitter Inborn genetic diseases ⚠
- c.-102_-91del Single submitter
- c.-123G>T Single submitter ⚠
- c.-132C>A Single submitter ⚠
- c.-51-1502G>A Single submitter autosomal recessive nonsyndromic hearing loss 74
- c.-53C>T Single submitter
- c.-75C>T Single submitter Inborn genetic diseases ⚠
- c.-76G>A Single submitter ⚠
- c.-76G>T Single submitter Inborn genetic diseases ⚠
- c.-96G>A Single submitter Inborn genetic diseases ⚠
- p.Ala156Thr Single submitter Inborn genetic diseases ⚠
- p.Ala168Val Single submitter Inborn genetic diseases ⚠
- p.Ala178Thr Single submitter Inborn genetic diseases ⚠
- p.Ala3Thr Single submitter
- p.Arg123Ser Single submitter ⚠
- p.Asn5Lys Single submitter
- p.Asn5Ser Single submitter
- p.Asp104Asn Single submitter ⚠
- p.Asp181Gly Single submitter Inborn genetic diseases ⚠
- p.Asp73Glu Single submitter Inborn genetic diseases ⚠
- p.Cys128Tyr Single submitter autosomal recessive nonsyndromic hearing loss 74 ⚠
- p.Cys151Gly Single submitter Inborn genetic diseases ⚠
- p.Gln41Arg Single submitter Inborn genetic diseases ⚠
- p.Gln41Lys Single submitter Inborn genetic diseases ⚠
- p.Glu57Ala Single submitter Inborn genetic diseases ⚠
- p.Glu61Lys Single submitter Inborn genetic diseases ⚠
- p.Gly132Asp Single submitter
- p.Gly147Arg Single submitter ⚠
- p.Gly59Glu Single submitter ⚠
- p.Gly96Asp Single submitter ⚠
- p.Gly96Ser Single submitter Inborn genetic diseases ⚠
- p.Ile76Val Single submitter Inborn genetic diseases ⚠
- p.Phe113Leu Single submitter ⚠
- p.Pro49Thr Single submitter ⚠
- p.Ser129Cys Single submitter ⚠
- p.Ser176Asn Single submitter Inborn genetic diseases ⚠
- p.Ser27Trp Single submitter ⚠
- p.Ser62Arg Single submitter Inborn genetic diseases
- p.Ser95Thr Single submitter ⚠
- p.Thr69Ala Single submitter Inborn genetic diseases ⚠
- p.Tyr119Cys Single submitter ⚠
- p.Val81del Single submitter autosomal recessive nonsyndromic hearing loss 74