MST1R — 237 ClinVar variants

All ClinVar germline MST1R variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 195 flagged for review →

1 Likely pathogenic · 16 Benign · 1 Benign/Likely benign · 27 Likely benign · 192 Uncertain significance

Full MST1R gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 195

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors lean, ClinVar uncertain 101

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 93

The independent predictors disagree with each other — read with care.

All MST1R variants

Likely pathogenic 1

Benign 16

Benign/Likely benign 1

  • p.Lys621Ter Multiple submitters nasopharyngeal carcinoma, susceptibility to, 3

Likely benign 27

Uncertain significance 192