NBEA — 1083 ClinVar variants

All ClinVar germline NBEA variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 371 flagged for review →

35 Pathogenic · 4 Pathogenic/Likely pathogenic · 48 Likely pathogenic · 25 Conflicting · 13 Benign · 12 Benign/Likely benign · 290 Likely benign · 656 Uncertain significance

Full NBEA gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 371

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 2

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 15

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 282

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 282

Predictors split 72

The independent predictors disagree with each other — read with care.

All NBEA variants

Pathogenic 35

  • p.Arg1493fs Multiple submitters Inborn genetic diseases
  • p.Arg2866Ter Multiple submitters neurodevelopmental disorder with or without early-onset generalized epilepsy
  • c.2652-1G>C Single submitter
  • c.4424-1G>C Single submitter
  • c.4662+1G>C Single submitter Neurodevelopmental delay
  • c.526+1G>T Single submitter
  • c.5648+1G>A Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • c.5649-1G>A Single submitter
  • c.5904-2A>G Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • c.6807-2A>G Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • c.8661+1G>A Single submitter
  • c.972+1G>T Single submitter
  • p.Ala213_Val214insTer Single submitter
  • p.Arg1317Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Arg2277Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Asp1269fs Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Asp1304fs Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Gln513Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Gln910Ter Single submitter
  • p.Gln968Ter Single submitter Inborn genetic diseases
  • p.His2589fs Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Leu371fs Single submitter
  • p.Leu886Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Phe2189fs Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Ser1736fs Single submitter autism spectrum disorder
  • p.Ser467Ter Single submitter
  • p.Trp2497Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Tyr2252_Ser2253delinsTer Single submitter Inborn genetic diseases
  • p.Tyr345Ter Single submitter intellectual disability
  • p.Arg2887Trp No assertion criteria typical paroxysmal kinesigenic dyskinesia ⚠
  • p.Arg336Ter No assertion criteria neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Glu2105Ter No assertion criteria neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Glu2822Lys No assertion criteria neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Pro1332Ser No assertion criteria neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Ser1046fs No assertion criteria

Pathogenic/Likely pathogenic 4

Likely pathogenic 48

  • p.Asn1121fs Multiple submitters neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Asp319Tyr Multiple submitters NBEA-related complex neurodevelopmental disorder
  • c.2651+1G>A Single submitter NBEA-related disorder
  • c.2845-1G>A Single submitter NBEA-related disorder
  • c.4080-2A>C Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • c.4242+2T>A Single submitter
  • c.4662+2dup Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • c.526+3A>G Single submitter Inborn genetic diseases
  • c.5366+1G>A Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • c.5367-2A>T Single submitter
  • c.6012+2T>C Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • c.6013-1G>A Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • c.6304+5G>T Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • c.7035+2T>C Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • c.7176+1G>A Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • c.7616_7617+1del Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Arg1001Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Arg1302Ter Single submitter NBEA-related disorder
  • p.Arg1991fs Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Arg2031Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Arg2507Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Arg2749fs Single submitter NBEA-related disorder
  • p.Asp1298Glu Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy ⚠
  • p.Cys2591fs Single submitter
  • p.Gln2575Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Gln542Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Glu1245Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Glu860Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Gly1113fs Single submitter
  • p.Gly1919Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Gly1967Arg Single submitter NBEA-related developmental delay and generalized epilepsy
  • p.Gly39fs Single submitter NBEA-related disorder
  • p.His926fs Single submitter NBEA-related disorder
  • p.His946Tyr Single submitter
  • p.Ile1952Val Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy ⚠
  • p.Met1339Ile Single submitter ⚠
  • p.Pro247Ser Single submitter
  • p.Ser1572Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Ser2172fs Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Ser2808Pro Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy ⚠
  • p.Thr2235_Ser2236insTer Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Trp137Ter Single submitter neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Trp2719Ter Single submitter
  • p.Trp2774Ter Single submitter intellectual disability
  • p.Val807fs Single submitter NBEA-related disorder
  • p.Asn1495fs No assertion criteria neurodevelopmental disorder with or without early-onset generalized epilepsy
  • p.Glu1680Ter No assertion criteria
  • p.Lys579Glu No assertion criteria

Conflicting classifications of pathogenicity 25

Benign 13

Benign/Likely benign 12

Likely benign 290

Uncertain significance 656

Showing the top 300 by review status; the full set is in the sitemap.