NCAPD3 — 357 ClinVar variants

All ClinVar germline NCAPD3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 237 flagged for review →

5 Pathogenic · 4 Likely pathogenic · 5 Conflicting · 17 Benign · 6 Benign/Likely benign · 72 Likely benign · 248 Uncertain significance

Full NCAPD3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 237

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 4

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 208

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 208

Predictors split 25

The independent predictors disagree with each other — read with care.

All NCAPD3 variants

Pathogenic 5

  • c.2675-1G>A Single submitter microcephaly 22, primary, autosomal recessive
  • p.Lys1093fs Single submitter microcephaly 22, primary, autosomal recessive
  • c.382+14A>G No assertion criteria microcephaly 22, primary, autosomal recessive
  • p.Glu1153Ala No assertion criteria microcephaly 22, primary, autosomal recessive ⚠
  • p.Val595fs No assertion criteria microcephaly 22, primary, autosomal recessive

Likely pathogenic 4

  • c.4388+1G>A Multiple submitters microcephaly 22, primary, autosomal recessive
  • p.Arg1235Ter Single submitter microcephaly 22, primary, autosomal recessive
  • p.Arg425fs Single submitter microcephaly 22, primary, autosomal recessive
  • p.Gln1077Ter Single submitter microcephaly 22, primary, autosomal recessive

Conflicting classifications of pathogenicity 5

Benign 17

Benign/Likely benign 6

Likely benign 72

Uncertain significance 248