NCKAP1 — 224 ClinVar variants

All ClinVar germline NCKAP1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 153 flagged for review →

11 Pathogenic · 17 Likely pathogenic · 6 Benign · 20 Likely benign · 170 Uncertain significance

Full NCKAP1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 153

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors lean, ClinVar uncertain 86

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 66

The independent predictors disagree with each other — read with care.

All NCKAP1 variants

Pathogenic 11

Likely pathogenic 17

Benign 6

Likely benign 20

Uncertain significance 170