NEB — 11910 ClinVar variants

All ClinVar germline NEB variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 1934 flagged for review →

524 Pathogenic · 309 Pathogenic/Likely pathogenic · 951 Likely pathogenic · 976 Conflicting · 218 Benign · 131 Benign/Likely benign · 5488 Likely benign · 3313 Uncertain significance

Full NEB gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 1934

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 2

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 426

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification. · showing the 150 best-reviewed of 426

Predicted LoF vs a conflicting call 3

ClinVar submitters conflict, and it's a predicted loss-of-function change in a gene where LoF causes disease — flagged for review, not resolved (verify NMD-escape for C-terminal truncations). Non-missense.

Predictors lean, ClinVar uncertain 1333

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 1333

Predictors split 170

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 170

All NEB variants

Pathogenic 524

Showing the top 300 by review status; the full set is in the sitemap.

Pathogenic/Likely pathogenic 309

Showing the top 300 by review status; the full set is in the sitemap.

  • c.1152+1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.1152+1G>T Multiple submitters nemaline myopathy
  • c.11806-1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.12018+1G>A Multiple submitters nemaline myopathy 2
  • c.12639+2T>C Multiple submitters nemaline myopathy 2
  • c.13788+1G>A Multiple submitters nemaline myopathy 2
  • c.1470+1G>A Multiple submitters nemaline myopathy 2
  • c.1470+1G>C Multiple submitters nemaline myopathy 2
  • c.1569+1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.1570-2A>G Multiple submitters nemaline myopathy 2
  • c.1570-2del Multiple submitters nemaline myopathy
  • c.1674+1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.1674+2T>C Multiple submitters arthrogryposis multiplex congenita 6
  • c.17118+1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.17845-1G>A Multiple submitters nemaline myopathy
  • c.17845-2A>T Multiple submitters nemaline myopathy
  • c.18157-2A>G Multiple submitters arthrogryposis multiplex congenita 6
  • c.18891+1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.19101+5G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.19836+1G>A Multiple submitters nemaline myopathy 2
  • c.2212-1G>A Multiple submitters nemaline myopathy 2
  • c.22591-1G>C Multiple submitters nemaline myopathy 2
  • c.22800+1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.24114+1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.2415+1G>A Multiple submitters congenital myopathy
  • c.24300+1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.2836-2A>G Multiple submitters arthrogryposis multiplex congenita 6
  • c.294+1G>A Multiple submitters nemaline myopathy 2
  • c.294+2T>C Multiple submitters arthrogryposis multiplex congenita 6
  • c.2943+1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.3042+1G>A Multiple submitters nemaline myopathy 2
  • c.3252_3255+3del Multiple submitters arthrogryposis multiplex congenita 6
  • c.3255+1G>C Multiple submitters arthrogryposis multiplex congenita 6
  • c.3255+1G>T Multiple submitters nemaline myopathy 2
  • c.3567+1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.37-1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.3879+1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.3879+2T>C Multiple submitters arthrogryposis multiplex congenita 6
  • c.3880-2A>G Multiple submitters nemaline myopathy 2
  • c.3987+1_3987+2delinsTG Multiple submitters arthrogryposis multiplex congenita 6
  • c.3987+1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.5343+5G>A Multiple submitters nemaline myopathy
  • c.5763+5G>A Multiple submitters NEB-related disorder
  • c.6076-2A>C Multiple submitters nemaline myopathy 2
  • c.612+1G>A Multiple submitters nemaline myopathy 2
  • c.7228-1G>A Multiple submitters nemaline myopathy 2
  • c.8265+1G>A Multiple submitters nemaline myopathy 2
  • c.8889+1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.928-1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.9414+1G>A Multiple submitters arthrogryposis multiplex congenita 6
  • c.9414+1G>T Multiple submitters NEB-related disorder
  • c.9619-2A>G Multiple submitters arthrogryposis multiplex congenita 6
  • p.Ala1542fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Ala2117fs Multiple submitters nemaline myopathy 2
  • p.Ala247fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Ala7426fs Multiple submitters nemaline myopathy 2
  • p.Ala834fs Multiple submitters nemaline myopathy 2
  • p.Arg2516Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg2680Ter Multiple submitters nemaline myopathy 2
  • p.Arg2799fs Multiple submitters NEB-related disorder
  • p.Arg2809Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg3016Ter Multiple submitters nemaline myopathy 2
  • p.Arg3259Ter Multiple submitters nemaline myopathy 2
  • p.Arg3538Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg3722Ter Multiple submitters nemaline myopathy
  • p.Arg5748fs Multiple submitters nemaline myopathy
  • p.Arg6077fs Multiple submitters nemaline myopathy 2
  • p.Arg6289Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg6469Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg6663fs Multiple submitters nemaline myopathy
  • p.Arg6835Ter Multiple submitters nemaline myopathy
  • p.Arg6887Ter Multiple submitters NEB-related disorder
  • p.Arg7026Ter Multiple submitters NEB-related disorder
  • p.Arg7265Ter Multiple submitters nemaline myopathy
  • p.Arg7443Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg7497Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg7904fs Multiple submitters nemaline myopathy 2
  • p.Arg7966fs Multiple submitters nemaline myopathy
  • p.Arg8059fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg8121fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg8121fs Multiple submitters nemaline myopathy 2
  • p.Arg8152Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg8186fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg8214fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg8316Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg8395Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg883Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Arg974Ter Multiple submitters nemaline myopathy
  • p.Asn2509fs Multiple submitters nemaline myopathy 2
  • p.Asn4191fs Multiple submitters nemaline myopathy 2
  • p.Asn4450fs Multiple submitters nemaline myopathy 2
  • p.Asn5772fs Multiple submitters nemaline myopathy 2
  • p.Asn5811Ter Multiple submitters nemaline myopathy 2
  • p.Asn5943fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Asn604fs Multiple submitters nemaline myopathy 2
  • p.Asn7169fs Multiple submitters nemaline myopathy
  • p.Asn7951fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Asn8001fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Asn8094fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Asn8168fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Asp1091fs Multiple submitters nemaline myopathy 2
  • p.Asp1129fs Multiple submitters nemaline myopathy 2
  • p.Asp258fs Multiple submitters nemaline myopathy 2
  • p.Asp3516fs Multiple submitters nemaline myopathy 2
  • p.Asp3676fs Multiple submitters nemaline myopathy
  • p.Asp3863delinsValTer Multiple submitters nemaline myopathy 2
  • p.Asp600_Tyr601insTer Multiple submitters arthrogryposis multiplex congenita 6
  • p.Asp6071fs Multiple submitters nemaline myopathy 2
  • p.Asp617fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Asp6738fs Multiple submitters nemaline myopathy
  • p.Asp7238fs Multiple submitters nemaline myopathy 2
  • p.Asp929fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Cys1286Ter Multiple submitters nemaline myopathy 2
  • p.Gln166fs Multiple submitters nemaline myopathy 2
  • p.Gln1853Ter Multiple submitters nemaline myopathy
  • p.Gln194Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Gln2129Ter Multiple submitters nemaline myopathy
  • p.Gln2259Ter Multiple submitters nemaline myopathy 2
  • p.Gln2935Ter Multiple submitters nemaline myopathy
  • p.Gln3194Ter Multiple submitters nemaline myopathy 2
  • p.Gln3489Ter Multiple submitters nemaline myopathy
  • p.Gln3907Ter Multiple submitters nemaline myopathy 2
  • p.Gln4074Ter Multiple submitters nemaline myopathy 2
  • p.Gln4383Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Gln4418Ter Multiple submitters nemaline myopathy 2
  • p.Gln4586Ter Multiple submitters nemaline myopathy 2
  • p.Gln4594Ter Multiple submitters nemaline myopathy 2
  • p.Gln513Ter Multiple submitters nemaline myopathy
  • p.Gln5425Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Gln5759fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Gln6014Ter Multiple submitters nemaline myopathy 2
  • p.Gln6261Ter Multiple submitters nemaline myopathy
  • p.Gln6334Ter Multiple submitters nemaline myopathy 2
  • p.Gln6344Ter Multiple submitters nemaline myopathy 2
  • p.Gln6360Ter Multiple submitters nemaline myopathy 2
  • p.Gln6432Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Gln660Ter Multiple submitters nemaline myopathy 2
  • p.Gln7136Ter Multiple submitters nemaline myopathy 2
  • p.Gln7251Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Gln7277Ter Multiple submitters nemaline myopathy
  • p.Gln734Ter Multiple submitters nemaline myopathy
  • p.Gln7493His Multiple submitters arthrogryposis multiplex congenita 6 ⚠
  • p.Gln7598fs Multiple submitters nemaline myopathy 2
  • p.Gln7782Ter Multiple submitters nemaline myopathy 2
  • p.Gln7847Ter Multiple submitters nemaline myopathy
  • p.Gln7876fs Multiple submitters nemaline myopathy
  • p.Gln7876Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Gln8002fs Multiple submitters nemaline myopathy
  • p.Gln8002Ter Multiple submitters nemaline myopathy 2
  • p.Gln8058Ter Multiple submitters nemaline myopathy 2
  • p.Gln8126fs Multiple submitters nemaline myopathy
  • p.Gln8267fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Gln8444Ter Multiple submitters nemaline myopathy
  • p.Gln8445Ter Multiple submitters nemaline myopathy
  • p.Glu2069Ter Multiple submitters nemaline myopathy 2
  • p.Glu2188fs Multiple submitters nemaline myopathy
  • p.Glu6386Ter Multiple submitters nemaline myopathy 2
  • p.Glu6852Ter Multiple submitters nemaline myopathy
  • p.Glu7074Ter Multiple submitters nemaline myopathy 2
  • p.Glu7380fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Glu7593fs Multiple submitters nemaline myopathy 2
  • p.Glu7972fs Multiple submitters nemaline myopathy
  • p.Glu8003fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Glu8025fs Multiple submitters nemaline myopathy 2
  • p.Glu8034fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Glu8074Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Glu8120fs Multiple submitters nemaline myopathy 2
  • p.Glu887Ter Multiple submitters nemaline myopathy 2
  • p.Gly2275fs Multiple submitters nemaline myopathy
  • p.Gly2365Ter Multiple submitters nemaline myopathy 2
  • p.Gly4367Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Gly5926_Tyr5927insTer Multiple submitters arthrogryposis multiplex congenita 6
  • p.Gly7687fs Multiple submitters nemaline myopathy 2
  • p.His1231fs Multiple submitters nemaline myopathy 2
  • p.His692fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.His8031fs Multiple submitters nemaline myopathy
  • p.His8093fs Multiple submitters nemaline myopathy 2
  • p.His8124fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Ile2508fs Multiple submitters NEB-related disorder
  • p.Ile3156fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Ile4585Ter Multiple submitters nemaline myopathy 2
  • p.Ile8018fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Ile892fs Multiple submitters nemaline myopathy 2
  • p.Leu1282fs Multiple submitters nemaline myopathy 2
  • p.Leu1770Ter Multiple submitters nemaline myopathy 2
  • p.Leu2271_Tyr2272insTer Multiple submitters arthrogryposis multiplex congenita 6
  • p.Leu2316fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Leu2634fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Leu2745Ter Multiple submitters nemaline myopathy
  • p.Leu4443fs Multiple submitters nemaline myopathy 2
  • p.Leu5899fs Multiple submitters nemaline myopathy
  • p.Leu624Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Leu6771fs Multiple submitters nemaline myopathy 2
  • p.Leu7407fs Multiple submitters nemaline myopathy
  • p.Leu8000fs Multiple submitters nemaline myopathy
  • p.Leu8071fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Leu8102fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Leu8133fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Lys1201Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Lys1297Ter Multiple submitters nemaline myopathy
  • p.Lys1342fs Multiple submitters nemaline myopathy 2
  • p.Lys1615Ter Multiple submitters nemaline myopathy
  • p.Lys1842fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Lys2026fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Lys2677fs Multiple submitters nemaline myopathy 2
  • p.Lys406fs Multiple submitters nemaline myopathy
  • p.Lys6168fs Multiple submitters nemaline myopathy 2
  • p.Lys6931Ter Multiple submitters nemaline myopathy 2
  • p.Lys6992fs Multiple submitters nemaline myopathy 2
  • p.Lys6992Ter Multiple submitters nemaline myopathy 2
  • p.Lys6999Ter Multiple submitters nemaline myopathy
  • p.Lys7106fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Lys7467fs Multiple submitters nemaline myopathy 2
  • p.Lys7504fs Multiple submitters nemaline myopathy 2
  • p.Lys7571Ter Multiple submitters nemaline myopathy 2
  • p.Lys8061fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Lys8092fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Lys854_Met855insTer Multiple submitters nemaline myopathy 2
  • p.Met1744fs Multiple submitters nemaline myopathy 2
  • p.Met2517fs Multiple submitters nemaline myopathy 2
  • p.Met2849fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Met7547fs Multiple submitters nemaline myopathy 2
  • p.Met7793fs Multiple submitters NEB-related disorder
  • p.Met8119fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Met8381fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Phe8222fs Multiple submitters nemaline myopathy 2
  • p.Pro4061fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Pro4407fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Pro509fs Multiple submitters nemaline myopathy 2
  • p.Pro7957Ter Multiple submitters nemaline myopathy 2
  • p.Pro928fs Multiple submitters nemaline myopathy
  • p.Ser1292Gly Multiple submitters nemaline myopathy 2
  • p.Ser1712fs Multiple submitters nemaline myopathy
  • p.Ser1908fs Multiple submitters nemaline myopathy
  • p.Ser4373fs Multiple submitters nemaline myopathy
  • p.Ser45fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Ser6654fs Multiple submitters nemaline myopathy
  • p.Ser6998fs Multiple submitters nemaline myopathy 2
  • p.Ser8006fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Ser8038Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Ser8394Ter Multiple submitters nemaline myopathy 2
  • p.Thr27_Ile28insTer Multiple submitters NEB-related disorder
  • p.Thr4056fs Multiple submitters nemaline myopathy
  • p.Thr4075fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Thr5996fs Multiple submitters nemaline myopathy
  • p.Thr6633fs Multiple submitters nemaline myopathy 2
  • p.Thr7031fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Thr7042fs Multiple submitters nemaline myopathy 2
  • p.Thr7930fs Multiple submitters nemaline myopathy 2
  • p.Thr7961fs Multiple submitters nemaline myopathy 2
  • p.Thr8175fs Multiple submitters nemaline myopathy
  • p.Thr8237fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Trp1788Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Trp2241Ter Multiple submitters nemaline myopathy 2
  • p.Trp2418Ter Multiple submitters nemaline myopathy 2
  • p.Trp2661Ter Multiple submitters nemaline myopathy 2
  • p.Trp2970Ter Multiple submitters nemaline myopathy 2
  • p.Trp3325Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Trp3639Ter Multiple submitters nemaline myopathy 2
  • p.Trp3876Ter Multiple submitters nemaline myopathy
  • p.Trp4054fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Trp4054Ter Multiple submitters congenital myopathy
  • p.Trp4185Ter Multiple submitters nemaline myopathy 2
  • p.Trp4520Ter Multiple submitters nemaline myopathy 2
  • p.Trp5754Ter Multiple submitters nemaline myopathy
  • p.Trp5919Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Tyr1130Ter Multiple submitters nemaline myopathy
  • p.Tyr1332Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Tyr13Ter Multiple submitters nemaline myopathy 2
  • p.Tyr1576fs Multiple submitters nemaline myopathy 2
  • p.Tyr1614Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Tyr1784fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Tyr2198Ter Multiple submitters nemaline myopathy 2
  • p.Tyr2515fs Multiple submitters nemaline myopathy 2
  • p.Tyr2549Ter Multiple submitters nemaline myopathy 2
  • p.Tyr2794Phe Multiple submitters arthrogryposis multiplex congenita 6
  • p.Tyr312fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Tyr3280Ter Multiple submitters nemaline myopathy
  • p.Tyr3353Ter Multiple submitters nemaline myopathy 2
  • p.Tyr3870Ter Multiple submitters nemaline myopathy 2
  • p.Tyr387Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Tyr4216Ter Multiple submitters nemaline myopathy 2
  • p.Tyr42Ter Multiple submitters nemaline myopathy 2
  • p.Tyr4391Ter Multiple submitters arthrogryposis multiplex congenita 6
  • p.Tyr4533Ter Multiple submitters nemaline myopathy 2
  • p.Tyr4591Ter Multiple submitters nemaline myopathy 2
  • p.Tyr5674fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Tyr5805Ter Multiple submitters nemaline myopathy
  • p.Tyr6125fs Multiple submitters nemaline myopathy 2
  • p.Tyr6617Ter Multiple submitters nemaline myopathy 2
  • p.Tyr6936Ter Multiple submitters nemaline myopathy
  • p.Tyr6978Ter Multiple submitters nemaline myopathy
  • p.Tyr7390Ter Multiple submitters nemaline myopathy
  • p.Tyr7533fs Multiple submitters nemaline myopathy 2
  • p.Tyr7712fs Multiple submitters NEB-related disorder
  • p.Tyr7785fs Multiple submitters nemaline myopathy 2
  • p.Tyr7796fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Tyr8010fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Tyr8072fs Multiple submitters arthrogryposis multiplex congenita 6
  • p.Tyr8134Ter Multiple submitters nemaline myopathy 2

Likely pathogenic 951

Showing the top 300 by review status; the full set is in the sitemap.

Conflicting classifications of pathogenicity 976

Showing the top 300 by review status; the full set is in the sitemap.

Benign 218

Benign/Likely benign 131

Likely benign 5488

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 3313

Showing the top 300 by review status; the full set is in the sitemap.