NEXN — 805 ClinVar variants

All ClinVar germline NEXN variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 384 flagged for review →

14 Pathogenic · 1 Pathogenic/Likely pathogenic · 8 Likely pathogenic · 65 Conflicting · 22 Benign · 17 Benign/Likely benign · 196 Likely benign · 482 Uncertain significance

Full NEXN gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 384

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 15

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 246

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 246

Predictors split 123

The independent predictors disagree with each other — read with care.

All NEXN variants

Pathogenic 14

Pathogenic/Likely pathogenic 1

  • p.Ile435fs Multiple submitters NEXN-related disorder

Likely pathogenic 8

Conflicting classifications of pathogenicity 65

Benign 22

Benign/Likely benign 17

  • c.1252-10T>G Multiple submitters hypertrophic cardiomyopathy 20
  • c.1252-5dup Multiple submitters Cardiovascular phenotype
  • c.1659+18C>G Multiple submitters hypertrophic cardiomyopathy 20
  • c.687+8TTTG[2] Multiple submitters dilated cardiomyopathy 1CC
  • c.864+12T>A Multiple submitters hypertrophic cardiomyopathy 20
  • c.865-17A>G Multiple submitters dilated cardiomyopathy 1CC
  • p.Ala343= Multiple submitters Cardiovascular phenotype
  • p.Arg474= Multiple submitters dilated cardiomyopathy 1CC
  • p.Asp355= Multiple submitters Cardiovascular phenotype
  • p.Asp52= Multiple submitters dilated cardiomyopathy 1CC
  • p.Asp595= Multiple submitters Cardiovascular phenotype
  • p.Gln259= Multiple submitters Cardiovascular phenotype
  • p.Glu470Gln Multiple submitters Cardiovascular phenotype
  • p.Leu26= Multiple submitters cardiomyopathy
  • p.Met317Leu Multiple submitters Cardiovascular phenotype
  • p.Met540Val Multiple submitters Cardiovascular phenotype ⚠
  • p.Pro244= Multiple submitters Cardiovascular phenotype

Likely benign 196

  • c.1252-14_1252-11del Multiple submitters hypertrophic cardiomyopathy 20
  • c.1252-16T>C Multiple submitters dilated cardiomyopathy 1CC
  • c.1252-20C>A Multiple submitters dilated cardiomyopathy 1CC
  • c.1473+15T>C Multiple submitters dilated cardiomyopathy 1CC
  • c.1474-10T>C Multiple submitters dilated cardiomyopathy 1CC
  • c.220-19_220-16del Multiple submitters dilated cardiomyopathy 1CC
  • c.220-6A>G Multiple submitters dilated cardiomyopathy 1CC
  • c.28-9C>T Multiple submitters dilated cardiomyopathy 1CC
  • c.299-10A>G Multiple submitters dilated cardiomyopathy 1CC
  • c.688-10G>A Multiple submitters hypertrophic cardiomyopathy 20
  • c.865-19G>A Multiple submitters dilated cardiomyopathy 1CC
  • c.865-9T>C Multiple submitters hypertrophic cardiomyopathy 20
  • c.*279G>A Multiple submitters
  • p.Ala237= Multiple submitters Cardiovascular phenotype
  • p.Ala329= Multiple submitters Cardiovascular phenotype
  • p.Ala581= Multiple submitters dilated cardiomyopathy 1CC
  • p.Ala79= Multiple submitters Cardiovascular phenotype
  • p.Arg348= Multiple submitters hypertrophic cardiomyopathy 20
  • p.Arg473= Multiple submitters hypertrophic cardiomyopathy 20
  • p.Arg484= Multiple submitters dilated cardiomyopathy 1CC
  • p.Arg633= Multiple submitters Cardiovascular phenotype
  • p.Asn422= Multiple submitters Cardiovascular phenotype
  • p.Asp152= Multiple submitters dilated cardiomyopathy 1CC
  • p.Asp324= Multiple submitters hypertrophic cardiomyopathy 20
  • p.Asp496= Multiple submitters dilated cardiomyopathy 1CC
  • p.Gln444= Multiple submitters dilated cardiomyopathy 1CC
  • p.Gln535= Multiple submitters hypertrophic cardiomyopathy 20
  • p.Gln629= Multiple submitters Cardiovascular phenotype
  • p.Gln72= Multiple submitters hypertrophic cardiomyopathy 20
  • p.Glu164= Multiple submitters cardiomyopathy
  • p.Glu193= Multiple submitters Cardiovascular phenotype
  • p.Glu528Gln Multiple submitters Cardiovascular phenotype
  • p.Glu558= Multiple submitters hypertrophic cardiomyopathy 20
  • p.Glu561= Multiple submitters hypertrophic cardiomyopathy 20
  • p.Gly568= Multiple submitters Cardiovascular phenotype
  • p.Gly650= Multiple submitters Cardiovascular phenotype
  • p.Ile74= Multiple submitters Cardiovascular phenotype
  • p.Leu169= Multiple submitters Cardiovascular phenotype
  • p.Leu310= Multiple submitters hypertrophic cardiomyopathy 20
  • p.Leu537= Multiple submitters hypertrophic cardiomyopathy 20
  • p.Leu551= Multiple submitters Cardiovascular phenotype
  • p.Leu641= Multiple submitters Cardiovascular phenotype
  • p.Lys136= Multiple submitters cardiomyopathy
  • p.Lys223= Multiple submitters dilated cardiomyopathy 1CC
  • p.Phe425= Multiple submitters Cardiovascular phenotype
  • p.Pro217= Multiple submitters Cardiovascular phenotype
  • p.Pro307= Multiple submitters Cardiovascular phenotype
  • p.Ser503= Multiple submitters dilated cardiomyopathy 1CC
  • p.Ser665= Multiple submitters dilated cardiomyopathy 1CC
  • p.Thr156= Multiple submitters dilated cardiomyopathy 1CC
  • p.Thr577= Multiple submitters cardiomyopathy
  • p.Thr591= Multiple submitters Cardiovascular phenotype
  • p.Thr602= Multiple submitters Cardiovascular phenotype
  • p.Tyr204= Multiple submitters Cardiovascular phenotype
  • p.Tyr22= Multiple submitters Cardiovascular phenotype
  • p.Tyr361= Multiple submitters Cardiovascular phenotype
  • p.Val174= Multiple submitters Cardiovascular phenotype
  • p.Val497= Multiple submitters Cardiovascular phenotype
  • p.Val90= Multiple submitters Cardiovascular phenotype
  • c.1054-19A>C Single submitter dilated cardiomyopathy 1CC
  • c.1054-206G>A Single submitter
  • c.1054-3T>C Single submitter
  • c.1251+10T>C Single submitter hypertrophic cardiomyopathy 20
  • c.1251+13G>T Single submitter dilated cardiomyopathy 1CC
  • c.1252-12T>A Single submitter dilated cardiomyopathy 1CC
  • c.1252-13A>C Single submitter
  • c.1252-14A>C Single submitter hypertrophic cardiomyopathy 20
  • c.1252-19_1252-18del Single submitter dilated cardiomyopathy 1CC
  • c.1252-241T>C Single submitter
  • c.1252-6T>C Single submitter hypertrophic cardiomyopathy 20
  • c.1473+115_1473+119del Single submitter
  • c.1473+15del Single submitter dilated cardiomyopathy 1CC
  • c.1473+7dup Single submitter dilated cardiomyopathy 1CC
  • c.1473+8A>G Single submitter hypertrophic cardiomyopathy 20
  • c.1474-18T>C Single submitter dilated cardiomyopathy 1CC
  • c.1474-7C>G Single submitter
  • c.1659+8G>A Single submitter dilated cardiomyopathy 1CC
  • c.1659+9C>T Single submitter dilated cardiomyopathy 1CC
  • c.1660-16A>C Single submitter dilated cardiomyopathy 1CC
  • c.220-13_220-10del Single submitter dilated cardiomyopathy 1CC
  • c.220-17T>C Single submitter dilated cardiomyopathy 1CC
  • c.220-7del Single submitter dilated cardiomyopathy 1CC
  • c.27+7C>T Single submitter hypertrophic cardiomyopathy 20
  • c.28-12C>A Single submitter hypertrophic cardiomyopathy 20
  • c.28-18T>A Single submitter
  • c.298+16G>A Single submitter hypertrophic cardiomyopathy 20
  • c.299-17T>C Single submitter dilated cardiomyopathy 1CC
  • c.448-10C>T Single submitter dilated cardiomyopathy 1CC
  • c.448-47del Single submitter
  • c.489+13T>C Single submitter dilated cardiomyopathy 1CC
  • c.489+19T>C Single submitter hypertrophic cardiomyopathy 20
  • c.490-14A>G Single submitter dilated cardiomyopathy 1CC
  • c.490-15T>A Single submitter hypertrophic cardiomyopathy 20
  • c.490-16C>T Single submitter hypertrophic cardiomyopathy 20
  • c.490-21_490-18del Single submitter dilated cardiomyopathy 1CC
  • c.688-11C>T Single submitter dilated cardiomyopathy 1CC
  • c.864+11A>G Single submitter dilated cardiomyopathy 1CC
  • c.864+231A>G Single submitter
  • c.864+43T>G Single submitter
  • c.865-12T>G Single submitter hypertrophic cardiomyopathy 20
  • c.-43T>A Single submitter
  • c.-52-4del Single submitter
  • c.-52-85C>A Single submitter
  • c.-53+36T>G Single submitter
  • c.*314A>C Single submitter
  • p.Ala107= Single submitter dilated cardiomyopathy 1CC
  • p.Ala161= Single submitter
  • p.Ala222= Single submitter hypertrophic cardiomyopathy 20
  • p.Ala270= Single submitter hypertrophic cardiomyopathy 20
  • p.Ala41= Single submitter Cardiovascular phenotype
  • p.Ala521= Single submitter Cardiovascular phenotype
  • p.Arg125= Single submitter dilated cardiomyopathy 1CC
  • p.Arg216Gln Single submitter Cardiovascular phenotype
  • p.Arg285= Single submitter hypertrophic cardiomyopathy 20
  • p.Arg45= Single submitter hypertrophic cardiomyopathy 20
  • p.Arg471= Single submitter hypertrophic cardiomyopathy 20
  • p.Arg498= Single submitter hypertrophic cardiomyopathy 20
  • p.Arg531= Single submitter
  • p.Arg65= Single submitter hypertrophic cardiomyopathy 20
  • p.Arg69= Single submitter dilated cardiomyopathy 1CC
  • p.Asn46= Single submitter Cardiovascular phenotype
  • p.Asp191= Single submitter Cardiovascular phenotype
  • p.Asp207= Single submitter Cardiovascular phenotype
  • p.Asp573= Single submitter Cardiovascular phenotype
  • p.Asp82= Single submitter Cardiovascular phenotype
  • p.Asp85Glu Single submitter Cardiovascular phenotype
  • p.Cys667= Single submitter
  • p.Gln47= Single submitter Cardiovascular phenotype
  • p.Glu197= Single submitter hypertrophic cardiomyopathy 20
  • p.Glu276Lys Single submitter hypertrophic cardiomyopathy ⚠
  • p.Glu323Gly Single submitter ⚠
  • p.Glu325= Single submitter Cardiovascular phenotype
  • p.Glu332= Single submitter Cardiovascular phenotype
  • p.Glu36= Single submitter Cardiovascular phenotype
  • p.Glu379= Single submitter dilated cardiomyopathy 1CC
  • p.Glu380= Single submitter dilated cardiomyopathy 1CC
  • p.Glu394= Single submitter dilated cardiomyopathy 1CC
  • p.Glu419= Single submitter dilated cardiomyopathy 1CC
  • p.Glu469= Single submitter hypertrophic cardiomyopathy 20
  • p.Glu533= Single submitter hypertrophic cardiomyopathy 20
  • p.Glu546= Single submitter dilated cardiomyopathy 1CC
  • p.Glu559= Single submitter Cardiovascular phenotype
  • p.Glu560= Single submitter Cardiovascular phenotype
  • p.Glu64= Single submitter Cardiovascular phenotype
  • p.Gly456= Single submitter dilated cardiomyopathy 1CC
  • p.Gly563= Single submitter dilated cardiomyopathy 1CC
  • p.His509= Single submitter cardiomyopathy
  • p.Ile467= Single submitter hypertrophic cardiomyopathy 20
  • p.Ile477= Single submitter Cardiovascular phenotype
  • p.Ile532= Single submitter dilated cardiomyopathy 1CC
  • p.Ile613= Single submitter Cardiovascular phenotype
  • p.Leu247= Single submitter Cardiovascular phenotype
  • p.Leu274= Single submitter Cardiovascular phenotype
  • p.Leu382= Single submitter dilated cardiomyopathy 1CC
  • p.Leu401= Single submitter hypertrophic cardiomyopathy 20
  • p.Leu411= Single submitter dilated cardiomyopathy 1CC
  • p.Leu448= Single submitter Cardiovascular phenotype
  • p.Leu458= Single submitter hypertrophic cardiomyopathy 20
  • p.Leu479= Single submitter hypertrophic cardiomyopathy 20
  • p.Lys187= Single submitter Cardiovascular phenotype
  • p.Lys263= Single submitter dilated cardiomyopathy 1CC
  • p.Lys272= Single submitter Cardiovascular phenotype
  • p.Lys300Asn Single submitter
  • p.Lys362= Single submitter dilated cardiomyopathy 1CC
  • p.Lys383= Single submitter hypertrophic cardiomyopathy 20
  • p.Lys400= Single submitter hypertrophic cardiomyopathy 20
  • p.Lys461= Single submitter hypertrophic cardiomyopathy 20
  • p.Lys522= Single submitter Cardiovascular phenotype
  • p.Lys54= Single submitter Cardiovascular phenotype
  • p.Lys655= Single submitter Cardiovascular phenotype
  • p.Met185Ile Single submitter Cardiovascular phenotype
  • p.Phe425Ser Single submitter Cardiovascular phenotype
  • p.Phe584= Single submitter hypertrophic cardiomyopathy 20
  • p.Pro499= Single submitter Cardiovascular phenotype
  • p.Pro598= Single submitter dilated cardiomyopathy 1CC
  • p.Pro646= Single submitter
  • p.Ser13= Single submitter Cardiovascular phenotype
  • p.Ser14= Single submitter
  • p.Ser15= Single submitter Cardiovascular phenotype
  • p.Ser168= Single submitter hypertrophic cardiomyopathy 20
  • p.Ser459= Single submitter dilated cardiomyopathy 1CC
  • p.Ser5= Single submitter hypertrophic cardiomyopathy 20
  • p.Ser579= Single submitter Cardiovascular phenotype
  • p.Ser662= Single submitter
  • p.Thr298Ala Single submitter Cardiovascular phenotype
  • p.Thr363= Single submitter dilated cardiomyopathy 1CC
  • p.Thr393= Single submitter dilated cardiomyopathy 1CC
  • p.Thr644= Single submitter hypertrophic cardiomyopathy 20
  • p.Thr670= Single submitter Cardiovascular phenotype
  • p.Tyr630= Single submitter
  • p.Val18= Single submitter Cardiovascular phenotype
  • p.Val23= Single submitter Cardiovascular phenotype
  • p.Val495Ile Single submitter Cardiovascular phenotype
  • p.Val511= Single submitter Cardiovascular phenotype
  • p.Val593= Single submitter hypertrophic cardiomyopathy 20
  • p.Val603= Single submitter

Uncertain significance 482

Showing the top 300 by review status; the full set is in the sitemap.