NGF — 190 ClinVar variants

All ClinVar germline NGF variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 105 flagged for review →

2 Pathogenic · 1 Likely pathogenic · 11 Conflicting · 8 Benign · 4 Benign/Likely benign · 56 Likely benign · 108 Uncertain significance

Full NGF gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 105

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 6

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 88

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 11

The independent predictors disagree with each other — read with care.

All NGF variants

Pathogenic 2

  • p.Arg81Ter Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Thr227fs Single submitter peripheral neuropathy

Likely pathogenic 1

Conflicting classifications of pathogenicity 11

  • c.-13+14G>A Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ala57Val Single submitter Inborn genetic diseases ⚠
  • p.Ala58= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ala64Val Single submitter Inborn genetic diseases ⚠
  • p.Arg75Lys Single submitter Inborn genetic diseases ⚠
  • p.Arg83Cys Single submitter Inborn genetic diseases ⚠
  • p.Gly15Ser Single submitter Inborn genetic diseases ⚠
  • p.Pro184= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Thr31= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Val159= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Val185Ile Single submitter Inborn genetic diseases ⚠

Benign 8

Benign/Likely benign 4

  • p.Ala58Val Multiple submitters Inborn genetic diseases
  • p.Arg80Gln Multiple submitters hereditary sensory and autonomic neuropathy type 5
  • p.Val26= Multiple submitters hereditary sensory and autonomic neuropathy type 5
  • p.Val72Met Multiple submitters hereditary sensory and autonomic neuropathy type 5

Likely benign 56

  • c.-12-118G>C Multiple submitters
  • p.Arg95His Multiple submitters Inborn genetic diseases
  • p.Gly131= Multiple submitters hereditary sensory and autonomic neuropathy type 5
  • p.Thr147= Multiple submitters hereditary sensory and autonomic neuropathy type 5
  • p.Tyr200= Multiple submitters hereditary sensory and autonomic neuropathy type 5
  • p.Val107= Multiple submitters hereditary sensory and autonomic neuropathy type 5
  • c.-120C>T Single submitter
  • c.-13+185T>C Single submitter
  • c.-137+13G>T Single submitter
  • p.Ala210= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ala219= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ala228= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Arg118= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Arg190= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Arg221= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Arg224= Single submitter
  • p.Arg50= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Arg62= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Arg80= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Asp73= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Cys179= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Glu106= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Glu156= Single submitter
  • p.Glu162= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Glu23= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Gly161= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Gly191= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Gly215= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Gly65= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.His117= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.His21= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.His30= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ile127= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ile152= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ile192= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Leu160= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Leu82= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Leu88= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Phe105= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Pro55= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Pro93= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ser124= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ser124= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ser134= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ser140= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ser187= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ser2= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ser53= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ser90= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Thr203= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Thr227= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Thr67= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Tyr6= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Val139= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Val238= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Val72= Single submitter hereditary sensory and autonomic neuropathy type 5

Uncertain significance 108

  • p.Ala11Thr Multiple submitters hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Ala18Val Multiple submitters hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Ala54Thr Multiple submitters hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Arg121Trp Multiple submitters hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Arg130Gly Multiple submitters hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Arg180Gln Multiple submitters hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Arg49Cys Multiple submitters hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Arg49His Multiple submitters Inborn genetic diseases ⚠
  • p.Arg52Cys Multiple submitters Inborn genetic diseases ⚠
  • p.Arg62Cys Multiple submitters Inborn genetic diseases ⚠
  • p.Arg62His Multiple submitters Inborn genetic diseases ⚠
  • p.Arg68Cys Multiple submitters Inborn genetic diseases ⚠
  • p.Arg68His Multiple submitters Inborn genetic diseases ⚠
  • p.Arg81Gln Multiple submitters Inborn genetic diseases ⚠
  • p.Arg83His Multiple submitters hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Arg86His Multiple submitters Inborn genetic diseases ⚠
  • p.Arg95Cys Multiple submitters hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Asp45Asn Multiple submitters Inborn genetic diseases ⚠
  • p.Gln66Lys Multiple submitters Inborn genetic diseases ⚠
  • p.Glu132Lys Multiple submitters hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Gly188Arg Multiple submitters Inborn genetic diseases ⚠
  • p.Lys171Arg Multiple submitters Inborn genetic diseases ⚠
  • p.Met213Thr Multiple submitters Inborn genetic diseases ⚠
  • p.Phe12Cys Multiple submitters Inborn genetic diseases ⚠
  • p.Phe133Leu Multiple submitters hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Pro112Arg Multiple submitters Inborn genetic diseases ⚠
  • p.Ser138Gly Multiple submitters hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Val141Leu Multiple submitters hereditary sensory and autonomic neuropathy type 5 ⚠
  • c.-12-1G>C Single submitter hereditary sensory and autonomic neuropathy type 5
  • c.*120T>G Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Ala11Val Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Ala149Ser Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Ala149Thr Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Ala18Ser Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Ala28Glu Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Ala58Ser Single submitter Inborn genetic diseases ⚠
  • p.Arg115Gly Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Arg130Lys Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Arg221Leu Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Arg224Trp Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Arg49Ser Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Arg62Ser Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Arg75Gly Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Arg80Trp Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Arg86Pro Single submitter Inborn genetic diseases ⚠
  • p.Arg95Ser Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Asn114His Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Asn164Ile Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Asn69His Single submitter ⚠
  • p.Asp226Gly Single submitter ⚠
  • p.Asp45fs Single submitter
  • p.Cys229= Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Gln172Arg Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Gln17Arg Single submitter Inborn genetic diseases ⚠
  • p.Gln92Arg Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Glu106Asp Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Glu106Lys Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Glu156Lys Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Glu96Gly Single submitter Inborn genetic diseases ⚠
  • p.Gly108Ser Single submitter Inborn genetic diseases ⚠
  • p.Gly15Arg Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Gly161Ala Single submitter Inborn genetic diseases ⚠
  • p.Gly191Val Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Gly65Arg Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.His205Asp Single submitter ⚠
  • p.His36Asn Single submitter ⚠
  • p.His42Asp Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.His42Tyr Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Ile192Thr Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Ile32Thr Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Ile59Lys Single submitter Inborn genetic diseases ⚠
  • p.Ile70Val Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Leu13Arg Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Leu211Pro Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Leu4Phe Single submitter Inborn genetic diseases ⚠
  • p.Leu8Pro Single submitter Inborn genetic diseases ⚠
  • p.Lys236Gln Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Met158Ile Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Phe113Ser Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Phe170Leu Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Phe222Cys Single submitter ⚠
  • p.Phe89Leu Single submitter Inborn genetic diseases ⚠
  • p.Pro112His Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Pro182Ser Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Pro20Leu Single submitter Inborn genetic diseases ⚠
  • p.Pro55Ala Single submitter ⚠
  • p.Pro85Ala Single submitter
  • p.Pro85Ser Single submitter hereditary sensory and autonomic neuropathy type 5
  • p.Pro94Thr Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Ser124Phe Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Ser168Arg Single submitter ⚠
  • p.Ser234Ile Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Ser2Pro Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Thr147Ser Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Thr177Ile Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Thr203Lys Single submitter ⚠
  • p.Thr227Lys Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Thr46Ala Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Thr46Asn Single submitter Inborn genetic diseases ⚠
  • p.Trp37Arg Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Val141Met Single submitter Inborn genetic diseases ⚠
  • p.Val143Ala Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Val163Met Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Val230Ala Single submitter Inborn genetic diseases ⚠
  • p.Val63Ala Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Val63Met Single submitter hereditary sensory and autonomic neuropathy type 5 ⚠
  • p.Ala228fs No assertion criteria Charcot-Marie-Tooth disease
  • p.Ser187Asn No assertion criteria Charcot-Marie-Tooth disease ⚠