NOG — 251 ClinVar variants
All ClinVar germline NOG variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 123 flagged for review →
32 Pathogenic · 4 Pathogenic/Likely pathogenic · 20 Likely pathogenic · 6 Conflicting · 7 Benign · 3 Benign/Likely benign · 36 Likely benign · 143 Uncertain significance
Full NOG gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 123
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 4
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
- NOG p.Ala36Thr Conflicting Single submitter
-
NOG p.Arg204Gln
Conflicting
Single submitter
tarsal-carpal coalition syndrome
- NOG p.Gly92Glu Conflicting Single submitter
-
NOG p.Ser113Leu
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 70
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
NOG p.Ala36Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
NOG p.Arg87Pro
Uncertain significance
Multiple submitters
NOG-related disorder
-
NOG p.Gln146Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
NOG p.Gly72Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
NOG p.Gly91Ala
Uncertain significance
Multiple submitters
Inborn genetic diseases
- NOG p.Gly91Asp Uncertain significance Multiple submitters
-
NOG p.Leu43Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
NOG p.Lys57Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
NOG p.Pro24Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
- NOG p.Ala102Glu Uncertain significance Single submitter
- NOG p.Ala115Thr Uncertain significance Single submitter
- NOG p.Ala115Val Uncertain significance Single submitter
- NOG p.Ala130Val Uncertain significance Single submitter
-
NOG p.Ala160Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- NOG p.Ala22Thr Uncertain significance Single submitter
- NOG p.Ala25Gly Uncertain significance Single submitter
- NOG p.Ala95Thr Uncertain significance Single submitter
- NOG p.Arg171Cys Uncertain significance Single submitter
-
NOG p.Arg182Pro
Uncertain significance
Single submitter
brachydactyly type B2
- NOG p.Arg3Ser Uncertain significance Single submitter
- NOG p.Arg87Trp Uncertain significance Single submitter
- NOG p.Asn40Ser Uncertain significance Single submitter
- NOG p.Asn40Thr Uncertain significance Single submitter
- NOG p.Asp163Glu Uncertain significance Single submitter
- NOG p.Cys184Gly Uncertain significance Single submitter
- NOG p.Cys228Phe Uncertain significance Single submitter
- NOG p.Gln110Leu Uncertain significance Single submitter
-
NOG p.Glu103Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- NOG p.Glu99Gly Uncertain significance Single submitter
- NOG p.Gly128Ser Uncertain significance Single submitter
-
NOG p.Gly128Val
Uncertain significance
Single submitter
Inborn genetic diseases
- NOG p.Gly27Ser Uncertain significance Single submitter
- NOG p.Gly77Asp Uncertain significance Single submitter
- NOG p.Gly89Asp Uncertain significance Single submitter
-
NOG p.Gly89Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- NOG p.Gly93Val Uncertain significance Single submitter
- NOG p.Gly96Arg Uncertain significance Single submitter
- NOG p.Gly96Glu Uncertain significance Single submitter
- NOG p.Gly97Asp Uncertain significance Single submitter
- NOG p.Ile120Thr Uncertain significance Single submitter
- NOG p.Ile53Met Uncertain significance Single submitter
- NOG p.Ile53Val Uncertain significance Single submitter
-
NOG p.Leu11Phe
Uncertain significance
Single submitter
Inborn genetic diseases
- NOG p.Leu70Phe Uncertain significance Single submitter
- NOG p.Lys174Arg Uncertain significance Single submitter
- NOG p.Pro117Arg Uncertain significance Single submitter
- NOG p.Pro170Arg Uncertain significance Single submitter
-
NOG p.Pro223Arg
Uncertain significance
Single submitter
proximal symphalangism 1A
- NOG p.Pro83His Uncertain significance Single submitter
- NOG p.Pro83Ser Uncertain significance Single submitter
- NOG p.Pro88Ser Uncertain significance Single submitter
- NOG p.Ser118Asn Uncertain significance Single submitter
- NOG p.Ser118Thr Uncertain significance Single submitter
- NOG p.Ser180Asn Uncertain significance Single submitter
- NOG p.Ser195Pro Uncertain significance Single submitter
- NOG p.Ser231Pro Uncertain significance Single submitter
- NOG p.Ser68Leu Uncertain significance Single submitter
- NOG p.Thr10Ile Uncertain significance Single submitter
- NOG p.Thr201Ala Uncertain significance Single submitter
- NOG p.Thr201Met Uncertain significance Single submitter
- NOG p.Thr64Met Uncertain significance Single submitter
- NOG p.Trp148Cys Uncertain significance Single submitter
- NOG p.Trp161Arg Uncertain significance Single submitter
-
NOG p.Tyr30Phe
Uncertain significance
Single submitter
Inborn genetic diseases
- NOG p.Val157Met Uncertain significance Single submitter
- NOG p.Val15Leu Uncertain significance Single submitter
- NOG p.Val15Met Uncertain significance Single submitter
- NOG p.Val191Met Uncertain significance Single submitter
- NOG p.Val198Leu Uncertain significance Single submitter
- NOG p.Val198Met Uncertain significance Single submitter
Predictors split 49
The independent predictors disagree with each other — read with care.
-
NOG p.Arg34Pro
Uncertain significance
Multiple submitters
proximal symphalangism 1A
-
NOG p.Asp75His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
NOG p.Glu227Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
NOG p.Glu58Gly
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
NOG p.Gly216Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
- NOG p.Leu41Arg Uncertain significance Multiple submitters
- NOG p.Leu46Phe Uncertain significance Multiple submitters
-
NOG p.Lys181Glu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
NOG p.Pro35Arg
Pathogenic/Likely pathogenic
Multiple submitters
tarsal-carpal coalition syndrome
-
NOG p.Pro35Ser
Pathogenic
Multiple submitters
NOG-related disorder
-
NOG p.Pro37Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
- NOG p.Pro84His Benign/Likely benign Multiple submitters
- NOG p.Arg167His Uncertain significance Single submitter
- NOG p.Arg34Leu Uncertain significance Single submitter
- NOG p.Asp163Asn Uncertain significance Single submitter
-
NOG p.Asp45Gly
Uncertain significance
Single submitter
Inborn genetic diseases
- NOG p.Asp60Glu Uncertain significance Single submitter
- NOG p.Gln208Glu Uncertain significance Single submitter
- NOG p.Glu227Ala Uncertain significance Single submitter
- NOG p.Glu48Gln Uncertain significance Single submitter
- NOG p.Glu48Lys Uncertain significance Single submitter
- NOG p.Glu85Val Uncertain significance Single submitter
- NOG p.Gly132Val Uncertain significance Single submitter
- NOG p.Gly211Glu Uncertain significance Single submitter
- NOG p.Gly212Asp Uncertain significance Single submitter
- NOG p.His29Tyr Uncertain significance Single submitter
- NOG p.His73Asp Uncertain significance Single submitter
- NOG p.His73Gln Uncertain significance Single submitter
- NOG p.Ile225Val Uncertain significance Single submitter
- NOG p.Leu46Val Uncertain significance Single submitter
- NOG p.Leu61Met Uncertain significance Single submitter
- NOG p.Lys121Gln Uncertain significance Single submitter
- NOG p.Lys140Asn Uncertain significance Single submitter
- NOG p.Lys181Arg Uncertain significance Single submitter
- NOG p.Met116Leu Uncertain significance Single submitter
- NOG p.Phe179Leu Uncertain significance Single submitter
- NOG p.Pro37Arg Uncertain significance Single submitter
-
NOG p.Pro42Leu
Conflicting
Single submitter
NOG-related disorder
-
NOG p.Pro42Thr
Likely pathogenic
Single submitter
NOG-related disorder
- NOG p.Pro52Arg Uncertain significance Single submitter
- NOG p.Pro84Leu Uncertain significance Single submitter
- NOG p.Ser118Arg Uncertain significance Single submitter
- NOG p.Ser138Asn Uncertain significance Single submitter
- NOG p.Ser231Leu Uncertain significance Single submitter
- NOG p.Thr153Ala Uncertain significance Single submitter
- NOG p.Thr201Lys Uncertain significance Single submitter
- NOG p.Val173Met Uncertain significance Single submitter
- NOG p.Val44Met Uncertain significance Single submitter
-
NOG p.Pro35Ala
Pathogenic
No assertion criteria
brachydactyly type B2
All NOG variants
Pathogenic 32
- p.Gln110Ter Multiple submitters NOG-related disorder
- p.Pro170Leu Multiple submitters
- p.Pro35Ser Multiple submitters NOG-related disorder ⚠
- p.Ala115fs Single submitter
- p.Ala22fs Single submitter multiple synostoses syndrome 1
- p.Cys184Ser Single submitter
- p.Cys207Ter Single submitter
- p.Glu119Ter Single submitter
- p.Glu2Ter Single submitter Inborn genetic diseases
- p.Gly212fs Single submitter NOG-related disorder
- p.Ile120fs Single submitter Inborn genetic diseases
- p.Leu149fs Single submitter
- p.Leu14Pro Single submitter NOG-related-symphlangism spectrum disorder
- p.Met1Val Single submitter NOG-related disorder
- p.Phe154fs Single submitter multiple synostoses syndrome 1
- p.Ser195fs Single submitter
- p.Trp205fs Single submitter stapes ankylosis with broad thumbs and toes
- p.Trp205Ter Single submitter epilepsy
- p.Tyr222Ter Single submitter multiple synostoses syndrome 1
- p.Arg167Gly No assertion criteria brachydactyly type B2
- p.Arg204Leu No assertion criteria tarsal-carpal coalition syndrome
- p.Cys184Tyr No assertion criteria proximal symphalangism 1A
- p.Cys232Trp No assertion criteria multiple synostoses syndrome 1
- p.Glu85fs No assertion criteria stapes ankylosis with broad thumbs and toes
- p.Gly189Cys No assertion criteria proximal symphalangism 1A
- p.Leu129Ter No assertion criteria proximal symphalangism 1A
- p.Leu20fs No assertion criteria multiple synostoses syndrome 1
- p.Pro223Leu No assertion criteria proximal symphalangism 1A
- p.Pro35Ala No assertion criteria brachydactyly type B2 ⚠
- p.Trp205Cys No assertion criteria multiple synostoses syndrome 1
- p.Trp217Gly No assertion criteria multiple synostoses syndrome 1
- p.Tyr222Asp No assertion criteria proximal symphalangism 1A
Pathogenic/Likely pathogenic 4
- p.Glu127Ter Multiple submitters brachydactyly type B2
- p.Pro35Arg Multiple submitters tarsal-carpal coalition syndrome ⚠
- p.Trp205Gly Multiple submitters NOG-related disorder
- p.Tyr222Cys Multiple submitters tarsal-carpal coalition syndrome
Likely pathogenic 20
- p.Arg167Cys Single submitter NOG-related disorder
- p.Arg182Cys Single submitter NOG-related disorder
- p.Arg206fs Single submitter Inborn genetic diseases
- p.Glu188fs Single submitter NOG-related disorder
- p.Glu227Ter Single submitter NOG-related disorder
- p.Gly114Arg Single submitter
- p.Gly72fs Single submitter NOG-related disorder
- p.Leu203fs Single submitter NOG-related disorder
- p.Lys229fs Single submitter NOG-related disorder
- p.Pro170fs Single submitter brachydactyly type B2
- p.Pro42Thr Single submitter NOG-related disorder ⚠
- p.Pro50fs Single submitter Bethlem myopathy 2
- p.Pro56Arg Single submitter
- p.Ser185Cys Single submitter proximal symphalangism 1A
- p.Ser185Pro Single submitter stapes ankylosis with broad thumbs and toes
- p.Ser82Ter Single submitter
- p.Trp205Arg Single submitter
- p.Val157Glu Single submitter
- p.Leu200Pro No assertion criteria proximal symphalangism 1A
- p.Trp150Ter No assertion criteria NOG-related disorder
Conflicting classifications of pathogenicity 6
- p.Ala36Thr Single submitter ⚠
- p.Arg204= Single submitter
- p.Arg204Gln Single submitter tarsal-carpal coalition syndrome ⚠
- p.Gly92Glu Single submitter ⚠
- p.Pro42Leu Single submitter NOG-related disorder ⚠
- p.Ser113Leu Single submitter Inborn genetic diseases ⚠
Benign 7
- c.-73G>A Multiple submitters
- p.Thr23Ile Multiple submitters
- c.-385C>A Single submitter
- c.*133_*135del Single submitter
- c.*134_*135del Single submitter
- c.*135del Single submitter
- p.Ala13Thr Single submitter
Benign/Likely benign 3
- p.Pro194= Multiple submitters
- p.Pro24Ser Multiple submitters
- p.Pro84His Multiple submitters ⚠
Likely benign 36
- p.Arg206= Multiple submitters
- p.Gly128= Multiple submitters
- p.Pro84= Multiple submitters
- p.Ala13= Single submitter
- p.Ala25= Single submitter
- p.Arg142= Single submitter
- p.Arg182= Single submitter
- p.Arg67= Single submitter
- p.Arg87= Single submitter
- p.Asn62= Single submitter
- p.Asp51= Single submitter
- p.Asp60= Single submitter
- p.Gln131= Single submitter
- p.Glu2= Single submitter
- p.Gly132= Single submitter
- p.Gly26= Single submitter
- p.Gly71= Single submitter
- p.Gly89= Single submitter
- p.Gly97= Single submitter
- p.His32= Single submitter
- p.Leu11= Single submitter
- p.Leu14= Single submitter
- p.Leu158= Single submitter
- p.Leu41= Single submitter
- p.Leu43= Single submitter
- p.Lys121= Single submitter
- p.Pro170= Single submitter
- p.Pro88= Single submitter
- p.Ser126= Single submitter
- p.Ser183= Single submitter
- p.Ser185= Single submitter
- p.Ser197= Single submitter
- p.Ser226= Single submitter
- p.Ser82= Single submitter
- p.Thr23Ala Single submitter Inborn genetic diseases
- p.Val15= Single submitter
Uncertain significance 143
- p.Ala36Val Multiple submitters Inborn genetic diseases ⚠
- p.Arg34Pro Multiple submitters proximal symphalangism 1A ⚠
- p.Arg87Pro Multiple submitters NOG-related disorder ⚠
- p.Asp75His Multiple submitters Inborn genetic diseases ⚠
- p.Gln146Leu Multiple submitters Inborn genetic diseases ⚠
- p.Glu103Val Multiple submitters
- p.Glu227Gln Multiple submitters Inborn genetic diseases ⚠
- p.Glu58Gly Multiple submitters Inborn genetic diseases ⚠
- p.Gly216Arg Multiple submitters Inborn genetic diseases ⚠
- p.Gly72Ser Multiple submitters Inborn genetic diseases ⚠
- p.Gly91Ala Multiple submitters Inborn genetic diseases ⚠
- p.Gly91Asp Multiple submitters ⚠
- p.Leu41Arg Multiple submitters ⚠
- p.Leu43Val Multiple submitters Inborn genetic diseases ⚠
- p.Leu46Phe Multiple submitters ⚠
- p.Lys181Glu Multiple submitters Inborn genetic diseases ⚠
- p.Lys57Arg Multiple submitters Inborn genetic diseases ⚠
- p.Pro24Gln Multiple submitters Inborn genetic diseases ⚠
- p.Pro37Ser Multiple submitters Inborn genetic diseases ⚠
- p.Ala102Glu Single submitter ⚠
- p.Ala115Thr Single submitter ⚠
- p.Ala115Val Single submitter ⚠
- p.Ala130Val Single submitter ⚠
- p.Ala160Ser Single submitter Inborn genetic diseases ⚠
- p.Ala22Thr Single submitter ⚠
- p.Ala25Gly Single submitter ⚠
- p.Ala95Thr Single submitter ⚠
- p.Arg111= Single submitter
- p.Arg142Gln Single submitter
- p.Arg167His Single submitter ⚠
- p.Arg171Cys Single submitter ⚠
- p.Arg171Leu Single submitter
- p.Arg182Pro Single submitter brachydactyly type B2 ⚠
- p.Arg34Leu Single submitter ⚠
- p.Arg3Ser Single submitter ⚠
- p.Arg87Trp Single submitter ⚠
- p.Asn162His Single submitter
- p.Asn40Ser Single submitter ⚠
- p.Asn40Thr Single submitter ⚠
- p.Asp163Asn Single submitter ⚠
- p.Asp163Glu Single submitter ⚠
- p.Asp45Gly Single submitter Inborn genetic diseases ⚠
- p.Asp60Glu Single submitter ⚠
- p.Cys184Gly Single submitter ⚠
- p.Cys228Phe Single submitter ⚠
- p.Gln110Leu Single submitter ⚠
- p.Gln208Glu Single submitter ⚠
- p.Gln213His Single submitter
- p.Glu103Asp Single submitter Inborn genetic diseases ⚠
- p.Glu127Lys Single submitter
- p.Glu227Ala Single submitter ⚠
- p.Glu48Gln Single submitter ⚠
- p.Glu48Lys Single submitter ⚠
- p.Glu85Val Single submitter ⚠
- p.Glu99Gly Single submitter ⚠
- p.Gly128Ser Single submitter ⚠
- p.Gly128Val Single submitter Inborn genetic diseases ⚠
- p.Gly132Val Single submitter ⚠
- p.Gly176= Single submitter
- p.Gly211= Single submitter
- p.Gly211Glu Single submitter ⚠
- p.Gly212Asp Single submitter ⚠
- p.Gly27= Single submitter
- p.Gly27Ser Single submitter ⚠
- p.Gly77Asp Single submitter ⚠
- p.Gly89Asp Single submitter ⚠
- p.Gly89Ser Single submitter Inborn genetic diseases ⚠
- p.Gly93Val Single submitter ⚠
- p.Gly96Arg Single submitter ⚠
- p.Gly96Glu Single submitter ⚠
- p.Gly97Asp Single submitter ⚠
- p.His199= Single submitter
- p.His29Tyr Single submitter ⚠
- p.His73Asp Single submitter ⚠
- p.His73Gln Single submitter ⚠
- p.Ile120= Single submitter
- p.Ile120Thr Single submitter ⚠
- p.Ile225Val Single submitter ⚠
- p.Ile47Val Single submitter
- p.Ile53= Single submitter
- p.Ile53Met Single submitter ⚠
- p.Ile53Val Single submitter ⚠
- p.Leu101= Single submitter
- p.Leu11Phe Single submitter Inborn genetic diseases ⚠
- p.Leu137= Single submitter
- p.Leu164= Single submitter
- p.Leu20= Single submitter
- p.Leu46Val Single submitter ⚠
- p.Leu61Met Single submitter ⚠
- p.Leu70Phe Single submitter ⚠
- p.Lys121Gln Single submitter ⚠
- p.Lys134= Single submitter
- p.Lys140Asn Single submitter ⚠
- p.Lys174Arg Single submitter ⚠
- p.Lys181Arg Single submitter ⚠
- p.Met116Leu Single submitter ⚠
- p.Phe154= Single submitter
- p.Phe179Leu Single submitter ⚠
- p.Phe78= Single submitter
- p.Pro117Arg Single submitter ⚠
- p.Pro170Arg Single submitter ⚠
- p.Pro187= Single submitter
- p.Pro219Thr Single submitter
- p.Pro223Arg Single submitter proximal symphalangism 1A ⚠
- p.Pro37Arg Single submitter ⚠
- p.Pro52Arg Single submitter ⚠
- p.Pro83His Single submitter ⚠
- p.Pro83Ser Single submitter ⚠
- p.Pro84Leu Single submitter ⚠
- p.Pro88Ser Single submitter ⚠
- p.Ser118Arg Single submitter ⚠
- p.Ser118Asn Single submitter ⚠
- p.Ser118Thr Single submitter ⚠
- p.Ser138Asn Single submitter ⚠
- p.Ser180Asn Single submitter ⚠
- p.Ser195Pro Single submitter ⚠
- p.Ser231Leu Single submitter ⚠
- p.Ser231Pro Single submitter ⚠
- p.Ser68Leu Single submitter ⚠
- p.Thr10= Single submitter
- p.Thr10Ile Single submitter ⚠
- p.Thr153Ala Single submitter ⚠
- p.Thr201= Single submitter
- p.Thr201Ala Single submitter ⚠
- p.Thr201Lys Single submitter ⚠
- p.Thr201Met Single submitter ⚠
- p.Thr64= Single submitter
- p.Thr64Met Single submitter ⚠
- p.Trp148Cys Single submitter ⚠
- p.Trp161Arg Single submitter ⚠
- p.Tyr30Phe Single submitter Inborn genetic diseases ⚠
- p.Tyr74= Single submitter
- p.Val157Met Single submitter ⚠
- p.Val15Leu Single submitter ⚠
- p.Val15Met Single submitter ⚠
- p.Val16= Single submitter
- p.Val173Leu Single submitter
- p.Val173Met Single submitter ⚠
- p.Val186Leu Single submitter
- p.Val191Met Single submitter ⚠
- p.Val198Leu Single submitter ⚠
- p.Val198Met Single submitter ⚠
- p.Val44Met Single submitter ⚠