NOS3 — 221 ClinVar variants
All ClinVar germline NOS3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 133 flagged for review →
2 Likely pathogenic · 3 Conflicting · 42 Benign · 3 Benign/Likely benign · 36 Likely benign · 135 Uncertain significance
Full NOS3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 133
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 1
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
-
NOS3 p.Pro58Ser
Likely pathogenic
Single submitter
primary ovarian failure
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
Predictors lean, ClinVar uncertain 108
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- NOS3 p.Arg107Trp Uncertain significance Multiple submitters
- NOS3 p.Val185Ala Uncertain significance Multiple submitters
- NOS3 p.Ala1188Ser Uncertain significance Single submitter
- NOS3 p.Ala1188Thr Uncertain significance Single submitter
- NOS3 p.Ala1192Thr Uncertain significance Single submitter
- NOS3 p.Ala127Thr Uncertain significance Single submitter
- NOS3 p.Ala159Thr Uncertain significance Single submitter
- NOS3 p.Ala198Thr Uncertain significance Single submitter
-
NOS3 p.Ala351Val
Uncertain significance
Single submitter
Alzheimer disease
- NOS3 p.Ala484Val Uncertain significance Single submitter
- NOS3 p.Ala587Thr Uncertain significance Single submitter
- NOS3 p.Ala641Ser Uncertain significance Single submitter
- NOS3 p.Ala86Thr Uncertain significance Single submitter
- NOS3 p.Ala945Thr Uncertain significance Single submitter
- NOS3 p.Arg1000Gln Uncertain significance Single submitter
- NOS3 p.Arg1049Leu Uncertain significance Single submitter
- NOS3 p.Arg1154Gly Uncertain significance Single submitter
- NOS3 p.Arg1186Gln Uncertain significance Single submitter
- NOS3 p.Arg179Ser Uncertain significance Single submitter
- NOS3 p.Arg187Gln Uncertain significance Single submitter
- NOS3 p.Arg202Lys Uncertain significance Single submitter
- NOS3 p.Arg221Gln Uncertain significance Single submitter
- NOS3 p.Arg285His Uncertain significance Single submitter
- NOS3 p.Arg372His Uncertain significance Single submitter
- NOS3 p.Arg602Gln Uncertain significance Single submitter
- NOS3 p.Arg602Leu Uncertain significance Single submitter
-
NOS3 p.Arg655Trp
Uncertain significance
Single submitter
Alzheimer disease type 1
- NOS3 p.Arg728Gln Uncertain significance Single submitter
-
NOS3 p.Arg98Cys
Uncertain significance
Single submitter
NOS3-related disorder
- NOS3 p.Arg98His Uncertain significance Single submitter
- NOS3 p.Asp1059Asn Uncertain significance Single submitter
- NOS3 p.Asp1082Asn Uncertain significance Single submitter
- NOS3 p.Asp1136Asn Uncertain significance Single submitter
- NOS3 p.Asp264Tyr Uncertain significance Single submitter
- NOS3 p.Asp91Asn Uncertain significance Single submitter
- NOS3 p.Cys1048Arg Uncertain significance Single submitter
- NOS3 p.Cys235Phe Uncertain significance Single submitter
- NOS3 p.Cys707Ser Uncertain significance Single submitter
- NOS3 p.Cys908Phe Uncertain significance Single submitter
- NOS3 p.Gln122Glu Uncertain significance Single submitter
- NOS3 p.Gln122His Uncertain significance Single submitter
- NOS3 p.Gln126Leu Uncertain significance Single submitter
- NOS3 p.Gln151Arg Uncertain significance Single submitter
- NOS3 p.Gln247His Uncertain significance Single submitter
- NOS3 p.Gln257Lys Uncertain significance Single submitter
- NOS3 p.Gln276His Uncertain significance Single submitter
- NOS3 p.Gln61Glu Uncertain significance Single submitter
- NOS3 p.Gln89Arg Uncertain significance Single submitter
- NOS3 p.Gln917Arg Uncertain significance Single submitter
- NOS3 p.Glu1182Lys Uncertain significance Single submitter
- NOS3 p.Glu75Asp Uncertain significance Single submitter
- NOS3 p.Glu883Asp Uncertain significance Single submitter
- NOS3 p.Gly1071Ser Uncertain significance Single submitter
- NOS3 p.Gly1187Asp Uncertain significance Single submitter
- NOS3 p.Gly1187Cys Uncertain significance Single submitter
- NOS3 p.Gly1187Ser Uncertain significance Single submitter
- NOS3 p.Gly284Ser Uncertain significance Single submitter
- NOS3 p.Gly595Ser Uncertain significance Single submitter
-
NOS3 p.Gly651Arg
Uncertain significance
Single submitter
Alzheimer disease type 1
- NOS3 p.Gly65Arg Uncertain significance Single submitter
- NOS3 p.Gly676Arg Uncertain significance Single submitter
-
NOS3 p.Gly786Arg
Uncertain significance
Single submitter
Alzheimer disease type 1
- NOS3 p.Gly843Arg Uncertain significance Single submitter
- NOS3 p.Leu1053Val Uncertain significance Single submitter
- NOS3 p.Leu123Pro Uncertain significance Single submitter
- NOS3 p.Leu124Arg Uncertain significance Single submitter
- NOS3 p.Leu855Val Uncertain significance Single submitter
- NOS3 p.Leu971Pro Uncertain significance Single submitter
- NOS3 p.Lys629Arg Uncertain significance Single submitter
- NOS3 p.Met383Leu Uncertain significance Single submitter
- NOS3 p.Met383Thr Uncertain significance Single submitter
- NOS3 p.Phe286Cys Uncertain significance Single submitter
- NOS3 p.Phe286Val Uncertain significance Single submitter
- NOS3 p.Phe710Val Uncertain significance Single submitter
- NOS3 p.Pro1003Ser Uncertain significance Single submitter
- NOS3 p.Pro1203His Uncertain significance Single submitter
- NOS3 p.Pro232Leu Uncertain significance Single submitter
- NOS3 p.Pro236Ser Uncertain significance Single submitter
- NOS3 p.Pro307Ala Uncertain significance Single submitter
- NOS3 p.Pro603Leu Uncertain significance Single submitter
- NOS3 p.Pro62Leu Uncertain significance Single submitter
- NOS3 p.Pro826Ser Uncertain significance Single submitter
- NOS3 p.Pro851Ser Uncertain significance Single submitter
- NOS3 p.Pro884Ala Uncertain significance Single submitter
- NOS3 p.Pro93Thr Uncertain significance Single submitter
- NOS3 p.Pro997Ala Uncertain significance Single submitter
- NOS3 p.Ser1006Thr Uncertain significance Single submitter
- NOS3 p.Ser1198Leu Uncertain significance Single submitter
- NOS3 p.Ser141Arg Uncertain significance Single submitter
- NOS3 p.Ser168Asn Uncertain significance Single submitter
- NOS3 p.Ser624Phe Uncertain significance Single submitter
- NOS3 p.Ser738Thr Uncertain significance Single submitter
- NOS3 p.Thr1094Met Uncertain significance Single submitter
- NOS3 p.Thr854Pro Uncertain significance Single submitter
- NOS3 p.Thr866Pro Uncertain significance Single submitter
-
NOS3 p.Thr95Ile
Uncertain significance
Single submitter
essential hypertension
- NOS3 p.Thr964Pro Uncertain significance Single submitter
- NOS3 p.Tyr210Cys Uncertain significance Single submitter
- NOS3 p.Val1088Met Uncertain significance Single submitter
- NOS3 p.Val1145Ile Uncertain significance Single submitter
- NOS3 p.Val404Met Uncertain significance Single submitter
- NOS3 p.Val649Ala Uncertain significance Single submitter
- NOS3 p.Val753Leu Uncertain significance Single submitter
- NOS3 p.Val76Ala Uncertain significance Single submitter
- NOS3 p.Val76Gly Uncertain significance Single submitter
- NOS3 p.Val914Ala Uncertain significance Single submitter
-
NOS3 p.Pro795Leu
Uncertain significance
No assertion criteria
NOS3-related disorder
- NOS3 p.Pro852Ser Uncertain significance No assertion criteria
Predictors split 22
The independent predictors disagree with each other — read with care.
- NOS3 p.Ala181Thr Uncertain significance Single submitter
- NOS3 p.Arg128Trp Conflicting Single submitter
- NOS3 p.Arg255Trp Uncertain significance Single submitter
- NOS3 p.Arg329His Uncertain significance Single submitter
- NOS3 p.Arg388Trp Likely benign Single submitter
- NOS3 p.Arg612His Uncertain significance Single submitter
- NOS3 p.Arg846Trp Uncertain significance Single submitter
- NOS3 p.Asn223Lys Uncertain significance Single submitter
- NOS3 p.Asp715Val Uncertain significance Single submitter
- NOS3 p.Gln857Arg Uncertain significance Single submitter
- NOS3 p.Glu1099Lys Uncertain significance Single submitter
- NOS3 p.Glu1107Lys Uncertain significance Single submitter
- NOS3 p.Glu156Gly Uncertain significance Single submitter
- NOS3 p.Glu308Lys Uncertain significance Single submitter
- NOS3 p.Glu308Val Uncertain significance Single submitter
- NOS3 p.Glu916Lys Uncertain significance Single submitter
- NOS3 p.Gly1135Ser Likely benign Single submitter
- NOS3 p.Gly259Asp Uncertain significance Single submitter
- NOS3 p.Ile343Thr Uncertain significance Single submitter
- NOS3 p.Phe172Leu Uncertain significance Single submitter
- NOS3 p.Pro919Arg Uncertain significance Single submitter
- NOS3 p.Ser203Tyr Uncertain significance No assertion criteria
All NOS3 variants
Likely pathogenic 2
- p.Glu169Lys Single submitter primary ovarian failure
- p.Pro58Ser Single submitter primary ovarian failure ⚠
Conflicting classifications of pathogenicity 3
- p.Arg128Trp Single submitter ⚠
- p.Thr824Ile Single submitter ⚠
- p.Thr854Met Single submitter ⚠
Benign 42
- c.1132-253C>A Multiple submitters
- c.1752+1245A>G Multiple submitters
- c.1752+1554C>A Multiple submitters
- c.1752+899G>A Multiple submitters
- c.1821-62G>T Multiple submitters
- c.2112+36C>A Multiple submitters
- c.2324+28C>A Multiple submitters
- c.2513-86T>C Multiple submitters
- c.2685+113C>T Multiple submitters
- c.270+42G>A Multiple submitters
- c.271-62C>G Multiple submitters
- c.2897-44G>A Multiple submitters
- c.2984+15A>G Multiple submitters
- c.3106+11G>T Multiple submitters
- c.3255+161A>C Multiple submitters
- c.3256-12G>A Multiple submitters
- c.817-26A>G Multiple submitters
- p.Ala666= Multiple submitters
- p.Arg112Gln Multiple submitters
- p.Arg128Gln Multiple submitters
- p.Arg665His Multiple submitters
- p.Arg885Met Multiple submitters
- p.Asn283= Multiple submitters
- p.Asp1158= Multiple submitters
- p.Asp258= Multiple submitters
- p.Asp287= Multiple submitters
- p.Asp287Asn Multiple submitters
- p.Asp298Glu Multiple submitters preeclampsia/eclampsia 1
- p.Glu1060= Multiple submitters
- p.Leu874= Multiple submitters
- p.Thr1166= Multiple submitters
- p.Val1117= Multiple submitters
- c.1132-199G>A Single submitter
- c.1752+219C>G Single submitter
- c.1820+160_1820+161insT Single submitter
- c.2324+22C>A Single submitter
- c.2325-45dup Single submitter
- c.2985-531G>C Single submitter
- c.957-7C>T Single submitter
- c.*6G>A Single submitter
- p.Arg938= Single submitter
- p.Glu1138= Single submitter
Benign/Likely benign 3
- p.Ala155= Multiple submitters preeclampsia/eclampsia 1
- p.Arg1108= Multiple submitters
- p.Pro820= Multiple submitters
Likely benign 36
- p.Arg856His Multiple submitters
- p.His1156= Multiple submitters
- c.1131+9C>T Single submitter
- c.1752+1091C>T Single submitter
- c.2112+9A>G Single submitter
- c.2113-4G>A Single submitter
- c.2325-6C>T Single submitter
- c.270+9G>A Single submitter
- c.271-7G>T Single submitter
- c.582+5G>A Single submitter
- c.816+10G>A Single submitter
- c.816+9C>T Single submitter
- p.Ala174Thr Single submitter
- p.Ala739Thr Single submitter
- p.Ala812= Single submitter
- p.Ala881Val Single submitter
- p.Arg388Trp Single submitter ⚠
- p.Arg736Gln Single submitter
- p.Asn267= Single submitter
- p.Cys552= Single submitter
- p.Gln1052= Single submitter
- p.Gly1135Ser Single submitter ⚠
- p.Gly77= Single submitter
- p.His1055= Single submitter
- p.Leu311Phe Single submitter
- p.Leu367= Single submitter
- p.Lys834= Single submitter
- p.Pro1003= Single submitter
- p.Pro232= Single submitter
- p.Tyr1087= Single submitter
- p.Val827Met Single submitter
- c.3450+7A>G No assertion criteria NOS3-related disorder
- p.Gln982Leu No assertion criteria NOS3-related disorder
- p.Glu321= No assertion criteria NOS3-related disorder
- p.Gly259= No assertion criteria NOS3-related disorder
- p.Leu328= No assertion criteria NOS3-related disorder
Uncertain significance 135
- p.Arg107Trp Multiple submitters ⚠
- p.Val185Ala Multiple submitters ⚠
- c.1752+848G>A Single submitter
- c.674+1G>A Single submitter
- p.Ala1188Ser Single submitter ⚠
- p.Ala1188Thr Single submitter ⚠
- p.Ala1192Thr Single submitter ⚠
- p.Ala127Thr Single submitter ⚠
- p.Ala159Thr Single submitter ⚠
- p.Ala181Thr Single submitter ⚠
- p.Ala198Thr Single submitter ⚠
- p.Ala252Ser Single submitter
- p.Ala351Val Single submitter Alzheimer disease ⚠
- p.Ala484Val Single submitter ⚠
- p.Ala587Thr Single submitter ⚠
- p.Ala641Ser Single submitter ⚠
- p.Ala86Thr Single submitter ⚠
- p.Ala945Thr Single submitter ⚠
- p.Arg1000Gln Single submitter ⚠
- p.Arg1049Leu Single submitter ⚠
- p.Arg1154Gly Single submitter ⚠
- p.Arg1186Gln Single submitter ⚠
- p.Arg179Ser Single submitter ⚠
- p.Arg187Gln Single submitter ⚠
- p.Arg202Lys Single submitter ⚠
- p.Arg221Gln Single submitter ⚠
- p.Arg234Cys Single submitter
- p.Arg250His Single submitter
- p.Arg255Trp Single submitter ⚠
- p.Arg285His Single submitter ⚠
- p.Arg329His Single submitter ⚠
- p.Arg372His Single submitter ⚠
- p.Arg602Gln Single submitter ⚠
- p.Arg602Leu Single submitter ⚠
- p.Arg612His Single submitter ⚠
- p.Arg655Trp Single submitter Alzheimer disease type 1 ⚠
- p.Arg728Gln Single submitter ⚠
- p.Arg846Trp Single submitter ⚠
- p.Arg98Cys Single submitter NOS3-related disorder ⚠
- p.Arg98His Single submitter ⚠
- p.Asn223Lys Single submitter ⚠
- p.Asp1059Asn Single submitter ⚠
- p.Asp1082Asn Single submitter ⚠
- p.Asp1136Asn Single submitter ⚠
- p.Asp264Tyr Single submitter ⚠
- p.Asp715Val Single submitter ⚠
- p.Asp91Asn Single submitter ⚠
- p.Cys1048Arg Single submitter ⚠
- p.Cys235Phe Single submitter ⚠
- p.Cys707Ser Single submitter ⚠
- p.Cys908Phe Single submitter ⚠
- p.Gln122Glu Single submitter ⚠
- p.Gln122His Single submitter ⚠
- p.Gln126Leu Single submitter ⚠
- p.Gln151Arg Single submitter ⚠
- p.Gln247His Single submitter ⚠
- p.Gln257Lys Single submitter ⚠
- p.Gln276His Single submitter ⚠
- p.Gln61Glu Single submitter ⚠
- p.Gln857Arg Single submitter ⚠
- p.Gln89Arg Single submitter ⚠
- p.Gln917Arg Single submitter ⚠
- p.Glu1099Lys Single submitter ⚠
- p.Glu1107Lys Single submitter ⚠
- p.Glu1182Lys Single submitter ⚠
- p.Glu156Gly Single submitter ⚠
- p.Glu308Lys Single submitter ⚠
- p.Glu308Val Single submitter ⚠
- p.Glu693Lys Single submitter
- p.Glu75Asp Single submitter ⚠
- p.Glu883Asp Single submitter ⚠
- p.Glu916Lys Single submitter ⚠
- p.Gly1071Ser Single submitter ⚠
- p.Gly1187Asp Single submitter ⚠
- p.Gly1187Cys Single submitter ⚠
- p.Gly1187Ser Single submitter ⚠
- p.Gly259Asp Single submitter ⚠
- p.Gly284Ser Single submitter ⚠
- p.Gly595Ser Single submitter ⚠
- p.Gly651Arg Single submitter Alzheimer disease type 1 ⚠
- p.Gly65Arg Single submitter ⚠
- p.Gly676Arg Single submitter ⚠
- p.Gly786Arg Single submitter Alzheimer disease type 1 ⚠
- p.Gly843Arg Single submitter ⚠
- p.Ile343Thr Single submitter ⚠
- p.Leu1053Val Single submitter ⚠
- p.Leu123Pro Single submitter ⚠
- p.Leu124Arg Single submitter ⚠
- p.Leu855Val Single submitter ⚠
- p.Leu971Pro Single submitter ⚠
- p.Lys629Arg Single submitter ⚠
- p.Met339Val Single submitter
- p.Met383Leu Single submitter ⚠
- p.Met383Thr Single submitter ⚠
- p.Phe172Leu Single submitter ⚠
- p.Phe286Cys Single submitter ⚠
- p.Phe286Val Single submitter ⚠
- p.Phe710Val Single submitter ⚠
- p.Pro1003Ser Single submitter ⚠
- p.Pro1203His Single submitter ⚠
- p.Pro232Leu Single submitter ⚠
- p.Pro236Ser Single submitter ⚠
- p.Pro307Ala Single submitter ⚠
- p.Pro603Leu Single submitter ⚠
- p.Pro62Leu Single submitter ⚠
- p.Pro826Ser Single submitter ⚠
- p.Pro851Ser Single submitter ⚠
- p.Pro884Ala Single submitter ⚠
- p.Pro919Arg Single submitter ⚠
- p.Pro93Thr Single submitter ⚠
- p.Pro997Ala Single submitter ⚠
- p.Ser1006Thr Single submitter ⚠
- p.Ser1198Leu Single submitter ⚠
- p.Ser141Arg Single submitter ⚠
- p.Ser168Asn Single submitter ⚠
- p.Ser624Phe Single submitter ⚠
- p.Ser738Thr Single submitter ⚠
- p.Thr1094Met Single submitter ⚠
- p.Thr162Pro Single submitter
- p.Thr854Pro Single submitter ⚠
- p.Thr866Pro Single submitter ⚠
- p.Thr95Ile Single submitter essential hypertension ⚠
- p.Thr964Pro Single submitter ⚠
- p.Tyr210Cys Single submitter ⚠
- p.Val1088Met Single submitter ⚠
- p.Val1145Ile Single submitter ⚠
- p.Val404Met Single submitter ⚠
- p.Val649Ala Single submitter ⚠
- p.Val753Leu Single submitter ⚠
- p.Val76Ala Single submitter ⚠
- p.Val76Gly Single submitter ⚠
- p.Val914Ala Single submitter ⚠
- p.Pro795Leu No assertion criteria NOS3-related disorder ⚠
- p.Pro852Ser No assertion criteria ⚠
- p.Ser203Tyr No assertion criteria ⚠