NR3C2 — 476 ClinVar variants

All ClinVar germline NR3C2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 202 flagged for review →

36 Pathogenic · 2 Pathogenic/Likely pathogenic · 28 Likely pathogenic · 14 Conflicting · 45 Benign · 15 Benign/Likely benign · 73 Likely benign · 263 Uncertain significance

Full NR3C2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 202

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 7

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 165

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 165

Predictors split 30

The independent predictors disagree with each other — read with care.

All NR3C2 variants

Pathogenic 36

  • p.Arg590Ter Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Arg651Ter Multiple submitters NR3C2-related disorder
  • p.Arg652Ter Multiple submitters NR3C2-related disorder
  • p.Arg732Ter Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Arg947Ter Multiple submitters NR3C2-related disorder
  • p.Met186fs Multiple submitters
  • c.2509_2510+2del Single submitter Renal tubulopathies
  • p.Arg537Ter Single submitter autism spectrum disorder
  • p.Arg861Ter Single submitter
  • p.Gln967Ter Single submitter Renal tubulopathies
  • p.Glu120Ter Single submitter Renal tubulopathies
  • p.Gly607fs Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Lys953_Val954insTer Single submitter autism spectrum disorder
  • p.Met845fs Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Pro736fs Single submitter
  • p.Ser152fs Single submitter
  • p.Ser470Ter Single submitter pseudohypoaldosteronism
  • p.Ser562Ter Single submitter
  • p.Ser818Leu Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Tyr119fs Single submitter
  • p.Tyr819Asp Single submitter
  • p.Tyr819Ter Single submitter
  • c.2365+3del No assertion criteria autosomal dominant pseudohypoaldosteronism type 1
  • p.Ala958fs No assertion criteria autosomal dominant pseudohypoaldosteronism type 1
  • p.Cys436Ter No assertion criteria autosomal dominant pseudohypoaldosteronism type 1
  • p.Cys645Ter No assertion criteria autosomal dominant pseudohypoaldosteronism type 1
  • p.Gln776Arg No assertion criteria autosomal dominant pseudohypoaldosteronism type 1
  • p.Glu378Ter No assertion criteria autosomal dominant pseudohypoaldosteronism type 1
  • p.Glu972Gly No assertion criteria autosomal dominant pseudohypoaldosteronism type 1
  • p.Gly633Arg No assertion criteria autosomal dominant pseudohypoaldosteronism type 1
  • p.Leu979Pro No assertion criteria autosomal dominant pseudohypoaldosteronism type 1
  • p.Met105fs No assertion criteria autosomal dominant pseudohypoaldosteronism type 1
  • p.Ser163Ter No assertion criteria autosomal dominant pseudohypoaldosteronism type 1
  • p.Ser335fs No assertion criteria autosomal dominant pseudohypoaldosteronism type 1
  • p.Ser459fs No assertion criteria autosomal dominant pseudohypoaldosteronism type 1
  • p.Ser675Ter No assertion criteria autosomal dominant pseudohypoaldosteronism type 1

Pathogenic/Likely pathogenic 2

  • c.2799+1G>A Multiple submitters Inborn genetic diseases
  • p.Gln919Ter Multiple submitters NR3C2-related disorder

Likely pathogenic 28

  • p.Gln125Ter Multiple submitters NR3C2-related disorder
  • c.2014+2T>C Single submitter
  • c.2015-1G>A Single submitter
  • c.2642-1G>C Single submitter
  • p.Arg319fs Single submitter NR3C2-related disorder
  • p.Arg673Ter Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Asp832Gly Single submitter NR3C2-related disorder
  • p.Gln923Ter Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Glu35fs Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Leu535Ter Single submitter NR3C2-related disorder
  • p.Leu886Arg Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Leu886His Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Leu924Pro Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Leu938Arg Single submitter NR3C2-related disorder
  • p.Pro264_Leu265insTer Single submitter NR3C2-related disorder
  • p.Pro451fs Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Pro969fs Single submitter
  • p.Ser196fs Single submitter NR3C2-related disorder
  • p.Ser203fs Single submitter NR3C2-related disorder
  • p.Ser600Ter Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Ser818Trp Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Ser98fs Single submitter NR3C2-related disorder
  • p.Thr735fs Single submitter NR3C2-related disorder
  • p.Trp560Ter Single submitter NR3C2-related disorder
  • p.Trp918Ter Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Val241fs Single submitter NR3C2-related disorder
  • c.1758-1G>A No assertion criteria NR3C2-related disorder
  • p.Pro699fs No assertion criteria autosomal dominant pseudohypoaldosteronism type 1

Conflicting classifications of pathogenicity 14

  • c.1757+6T>C Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Arg18Gln Single submitter autosomal dominant pseudohypoaldosteronism type 1 ⚠
  • p.Arg247Trp Single submitter Inborn genetic diseases ⚠
  • p.Gln135His Single submitter autosomal dominant pseudohypoaldosteronism type 1 ⚠
  • p.Glu485_Ser487del Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Gly351Arg Single submitter autosomal dominant pseudohypoaldosteronism type 1 ⚠
  • p.Phe460Leu Single submitter Inborn genetic diseases ⚠
  • p.Pro696Leu Single submitter Inborn genetic diseases ⚠
  • p.Pro717= Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Ser222Ile Single submitter Inborn genetic diseases ⚠
  • p.Ser30= Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Ser424= Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Ser567= Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Ser567Leu Single submitter Inborn genetic diseases ⚠

Benign 45

  • c.1898-22T>C Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • c.2015-143T>C Multiple submitters
  • c.2510+65G>A Multiple submitters
  • c.2642-37A>G Multiple submitters
  • c.2800-191A>G Multiple submitters
  • c.-2C>G Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • c.*1032G>A Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • c.*1410A>G Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • c.*2410T>C Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • c.*2471G>A Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • c.*412C>T Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • c.*755A>C Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • c.*86T>C Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Arg150His Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Asn256Ser Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Asn444Thr Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Asp499= Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Pro697= Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Pro699= Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Thr364= Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Tyr804= Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Val180Ile Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • c.1757+240G>A Single submitter
  • c.1758-162A>C Single submitter
  • c.1758-288A>G Single submitter
  • c.1897+155C>T Single submitter
  • c.1897+227A>T Single submitter
  • c.1898-146A>G Single submitter
  • c.2365+202G>T Single submitter
  • c.2641+252A>G Single submitter
  • c.2642-175C>A Single submitter
  • c.-3+10G>A Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • c.-8A>T Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • c.*1121T>C Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • c.*1165C>T Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • c.*1209G>A Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • c.*1508A>G Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • c.*1802G>A Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • c.*2065A>C Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • c.*2088G>A Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • c.*2388T>C Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • c.*890T>G Single submitter autosomal dominant pseudohypoaldosteronism type 1
  • p.Ile185= Single submitter
  • p.Phe859= Single submitter
  • p.Ser298= Single submitter

Benign/Likely benign 15

  • c.1898-4T>C Multiple submitters pseudohyperaldosteronism type 2
  • c.2641+6T>C Multiple submitters
  • c.2800-17C>G Multiple submitters
  • p.Arg178= Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Arg569Gly Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Arg771His Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Asn554Ser Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Gln726= Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Glu35Gln Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.His563= Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Pro713= Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Ser571= Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Ser597= Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Tyr466= Multiple submitters autosomal dominant pseudohypoaldosteronism type 1
  • p.Val860Ile Multiple submitters autosomal dominant pseudohypoaldosteronism type 1

Likely benign 73

Uncertain significance 263