NRP1 — 298 ClinVar variants

All ClinVar germline NRP1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 164 flagged for review →

15 Benign · 1 Benign/Likely benign · 99 Likely benign · 183 Uncertain significance

Full NRP1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 164

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors lean, ClinVar uncertain 106

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 58

The independent predictors disagree with each other — read with care.

All NRP1 variants

Benign 15

  • p.Asp81= Multiple submitters
  • p.Ser267Asn Multiple submitters
  • p.Ser524Leu Multiple submitters
  • p.Leu489= Single submitter
  • p.Gly20= No assertion criteria NRP1-related disorder
  • p.Leu580= No assertion criteria NRP1-related disorder
  • p.Phe561Leu No assertion criteria NRP1-related disorder
  • p.Phe781= No assertion criteria NRP1-related disorder
  • p.Pro387= No assertion criteria NRP1-related disorder
  • p.Ser865= No assertion criteria NRP1-related disorder
  • p.Thr249= No assertion criteria NRP1-related disorder
  • p.Thr830= No assertion criteria NRP1-related disorder
  • p.Tyr422= No assertion criteria NRP1-related disorder
  • p.Val733Ile No assertion criteria NRP1-related disorder
  • p.Val877= No assertion criteria NRP1-related disorder

Benign/Likely benign 1

Likely benign 99

  • c.1759+1317G>A Single submitter
  • c.1864+138C>T Single submitter
  • c.1864+53T>C Single submitter
  • c.2431+3A>G Single submitter
  • c.2483-3T>C Single submitter
  • p.Asn522= Single submitter
  • p.Gly20Ser Single submitter
  • p.Ile140Leu Single submitter
  • p.Ile498Val Single submitter
  • p.Pro110Ser Single submitter
  • p.Val15Ala Single submitter
  • p.Val269Ile Single submitter
  • c.1864+10C>T No assertion criteria NRP1-related disorder
  • c.1865-8T>A No assertion criteria NRP1-related disorder
  • c.1925-5T>C No assertion criteria NRP1-related disorder
  • c.2062+5C>T No assertion criteria NRP1-related disorder
  • c.2062+9G>A No assertion criteria NRP1-related disorder
  • c.2432-4T>A No assertion criteria NRP1-related disorder
  • c.2432-5G>A No assertion criteria NRP1-related disorder
  • c.2482+9G>T No assertion criteria NRP1-related disorder
  • c.2483-7del No assertion criteria NRP1-related disorder
  • c.2483-7dup No assertion criteria NRP1-related disorder
  • c.249-6T>C No assertion criteria NRP1-related disorder
  • c.249-9G>C No assertion criteria NRP1-related disorder
  • c.658+6A>T No assertion criteria NRP1-related disorder
  • c.74-4G>C No assertion criteria NRP1-related disorder
  • c.814+8T>C No assertion criteria NRP1-related disorder
  • c.815-5T>C No assertion criteria NRP1-related disorder
  • c.981+5G>A No assertion criteria NRP1-related disorder
  • c.982-3C>T No assertion criteria NRP1-related disorder
  • c.*5A>T No assertion criteria NRP1-related disorder
  • c.*6G>A No assertion criteria NRP1-related disorder
  • c.*7A>G No assertion criteria NRP1-related disorder
  • p.Ala10= No assertion criteria NRP1-related disorder
  • p.Ala537= No assertion criteria NRP1-related disorder
  • p.Arg100= No assertion criteria NRP1-related disorder
  • p.Arg568= No assertion criteria NRP1-related disorder
  • p.Asn24= No assertion criteria NRP1-related disorder
  • p.Asn365= No assertion criteria NRP1-related disorder
  • p.Asn596= No assertion criteria NRP1-related disorder
  • p.Asp289= No assertion criteria NRP1-related disorder
  • p.Asp361= No assertion criteria NRP1-related disorder
  • p.Asp444= No assertion criteria NRP1-related disorder
  • p.Asp454= No assertion criteria NRP1-related disorder
  • p.Asp605= No assertion criteria NRP1-related disorder
  • p.Asp796= No assertion criteria NRP1-related disorder
  • p.Gln290= No assertion criteria NRP1-related disorder
  • p.Gln696= No assertion criteria NRP1-related disorder
  • p.Gln806= No assertion criteria NRP1-related disorder
  • p.Glu256= No assertion criteria NRP1-related disorder
  • p.Glu567= No assertion criteria NRP1-related disorder
  • p.Gly133= No assertion criteria NRP1-related disorder
  • p.Gly229= No assertion criteria NRP1-related disorder
  • p.Gly241= No assertion criteria NRP1-related disorder
  • p.Gly28= No assertion criteria NRP1-related disorder
  • p.Gly343= No assertion criteria NRP1-related disorder
  • p.Gly597= No assertion criteria NRP1-related disorder
  • p.Gly783= No assertion criteria NRP1-related disorder
  • p.Gly786= No assertion criteria NRP1-related disorder
  • p.Gly837= No assertion criteria NRP1-related disorder
  • p.Gly97= No assertion criteria NRP1-related disorder
  • p.His665= No assertion criteria NRP1-related disorder
  • p.His668= No assertion criteria NRP1-related disorder
  • p.Ile360= No assertion criteria NRP1-related disorder
  • p.Ile370Thr No assertion criteria NRP1-related disorder ⚠
  • p.Ile494= No assertion criteria NRP1-related disorder
  • p.Ile499= No assertion criteria NRP1-related disorder
  • p.Ile517= No assertion criteria NRP1-related disorder
  • p.Ile785= No assertion criteria NRP1-related disorder
  • p.Leu279= No assertion criteria NRP1-related disorder
  • p.Leu435= No assertion criteria NRP1-related disorder
  • p.Leu574Val No assertion criteria NRP1-related disorder
  • p.Leu599= No assertion criteria NRP1-related disorder
  • p.Leu854= No assertion criteria NRP1-related disorder
  • p.Leu896= No assertion criteria NRP1-related disorder
  • p.Leu914= No assertion criteria NRP1-related disorder
  • p.Phe205= No assertion criteria NRP1-related disorder
  • p.Phe692= No assertion criteria NRP1-related disorder
  • p.Pro475= No assertion criteria NRP1-related disorder
  • p.Pro592= No assertion criteria NRP1-related disorder
  • p.Pro682= No assertion criteria NRP1-related disorder
  • p.Ser240= No assertion criteria NRP1-related disorder
  • p.Ser251= No assertion criteria NRP1-related disorder
  • p.Ser432Phe No assertion criteria NRP1-related disorder ⚠
  • p.Ser520Gly No assertion criteria NRP1-related disorder
  • p.Ser524= No assertion criteria NRP1-related disorder
  • p.Ser921= No assertion criteria NRP1-related disorder
  • p.Thr337= No assertion criteria NRP1-related disorder
  • p.Thr680= No assertion criteria NRP1-related disorder
  • p.Thr916= No assertion criteria NRP1-related disorder
  • p.Tyr127= No assertion criteria NRP1-related disorder
  • p.Tyr354= No assertion criteria NRP1-related disorder
  • p.Tyr646= No assertion criteria NRP1-related disorder
  • p.Tyr833= No assertion criteria NRP1-related disorder
  • p.Tyr86= No assertion criteria NRP1-related disorder
  • p.Val421= No assertion criteria NRP1-related disorder
  • p.Val510= No assertion criteria NRP1-related disorder
  • p.Val600= No assertion criteria NRP1-related disorder
  • p.Val779= No assertion criteria NRP1-related disorder

Uncertain significance 183