NUBPL — 299 ClinVar variants

All ClinVar germline NUBPL variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 93 flagged for review →

10 Pathogenic · 2 Pathogenic/Likely pathogenic · 9 Likely pathogenic · 26 Conflicting · 48 Benign · 4 Benign/Likely benign · 59 Likely benign · 141 Uncertain significance

Full NUBPL gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 93

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 8

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 66

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 19

The independent predictors disagree with each other — read with care.

All NUBPL variants

Pathogenic 10

Pathogenic/Likely pathogenic 2

  • c.693+1G>A Multiple submitters mitochondrial complex I deficiency, nuclear type 21
  • p.Leu104Pro Multiple submitters mitochondrial complex I deficiency

Likely pathogenic 9

  • p.Gln176Ter Multiple submitters mitochondrial complex I deficiency, nuclear type 21
  • c.257-2A>G Single submitter Inborn genetic diseases
  • c.423-1G>A Single submitter mitochondrial complex I deficiency, nuclear type 21
  • c.423-1G>T Single submitter
  • c.608-1G>C Single submitter
  • p.Ala89fs Single submitter mitochondrial complex I deficiency, nuclear type 21
  • p.Gln47fs Single submitter NUBPL-related disorder
  • p.Glu150fs Single submitter mitochondrial complex I deficiency, nuclear type 21
  • p.Ser208fs Single submitter mitochondrial complex I deficiency, nuclear type 21

Conflicting classifications of pathogenicity 26

  • c.256+14T>C Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.256+6A>G Single submitter
  • c.422+8T>C Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.815-27T>C Single submitter mitochondrial complex I deficiency, nuclear type 21
  • c.-13A>G Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.-1C>T Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.-7C>T Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*736C>G Single submitter mitochondrial complex I deficiency, nuclear type 1
  • p.Ala73Ser Single submitter Inborn genetic diseases ⚠
  • p.Asn198Thr Single submitter mitochondrial complex I deficiency, nuclear type 21 ⚠
  • p.Asn95= Single submitter mitochondrial complex I deficiency, nuclear type 1
  • p.Asp105Tyr Single submitter mitochondrial complex I deficiency, nuclear type 21 ⚠
  • p.Gly138Asp Single submitter mitochondrial complex I deficiency, nuclear type 1 ⚠
  • p.Gly26Val Single submitter mitochondrial complex I deficiency, nuclear type 1 ⚠
  • p.Gly2Arg Single submitter mitochondrial complex I deficiency, nuclear type 21 ⚠
  • p.Gly56Arg Single submitter mitochondrial complex I deficiency, nuclear type 21 ⚠
  • p.His229Tyr Single submitter mitochondrial complex I deficiency, nuclear type 1 ⚠
  • p.Ile201= Single submitter mitochondrial complex I deficiency, nuclear type 1
  • p.Ile213= Single submitter mitochondrial complex I deficiency, nuclear type 1
  • p.Lys59Arg Single submitter ⚠
  • p.Lys67= Single submitter mitochondrial complex I deficiency, nuclear type 21
  • p.Met1Thr Single submitter mitochondrial oxidative phosphorylation disorder
  • p.Pro123= Single submitter mitochondrial complex I deficiency, nuclear type 1
  • p.Pro24Leu Single submitter mitochondrial complex I deficiency, nuclear type 1 ⚠
  • p.Ser54= Single submitter mitochondrial complex I deficiency, nuclear type 1
  • p.Val182Ala Single submitter mitochondrial complex I deficiency, nuclear type 1

Benign 48

Benign/Likely benign 4

Likely benign 59

Uncertain significance 141

  • c.382+3A>G Multiple submitters Inborn genetic diseases
  • c.*1151G>A Multiple submitters mitochondrial complex I deficiency, nuclear type 1
  • c.*806A>G Multiple submitters mitochondrial complex I deficiency, nuclear type 1
  • p.Ala100Thr Multiple submitters NUBPL-related disorder ⚠
  • p.Ala204Val Multiple submitters Inborn genetic diseases ⚠
  • p.Ala21Thr Multiple submitters Inborn genetic diseases ⚠
  • p.Ala73Asp Multiple submitters Inborn genetic diseases ⚠
  • p.Arg226His Multiple submitters mitochondrial complex I deficiency, nuclear type 1 ⚠
  • p.Arg48Lys Multiple submitters intellectual disability ⚠
  • p.Arg6Cys Multiple submitters Inborn genetic diseases ⚠
  • p.Asp298Ala Multiple submitters mitochondrial complex I deficiency, nuclear type 21 ⚠
  • p.Asp96Asn Multiple submitters mitochondrial complex I deficiency, nuclear type 1 ⚠
  • p.Glu319Gly Multiple submitters Inborn genetic diseases ⚠
  • p.Gly175Ser Multiple submitters Inborn genetic diseases ⚠
  • p.Gly221Val Multiple submitters ⚠
  • p.Met142Ile Multiple submitters ⚠
  • p.Phe292Cys Multiple submitters Inborn genetic diseases ⚠
  • p.Ser128Asn Multiple submitters mitochondrial complex I deficiency, nuclear type 1 ⚠
  • p.Ser163Leu Multiple submitters mitochondrial complex I deficiency, nuclear type 1 ⚠
  • p.Ser97= Multiple submitters
  • p.Ser97Leu Multiple submitters Inborn genetic diseases ⚠
  • c.109-11A>T Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.109-4A>G Single submitter Inborn genetic diseases
  • c.291+12978G>A Single submitter
  • c.514-19835C>A Single submitter mitochondrial complex I deficiency, nuclear type 21
  • c.607+3A>G Single submitter
  • c.-25A>G Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.-6C>T Single submitter
  • c.*1015C>A Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1047C>T Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1048G>A Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1260T>C Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*135T>G Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1370C>T Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1554A>G Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1594T>G Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1609G>A Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1619C>T Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1621C>T Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1655A>G Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1768G>A Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1773A>G Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1776G>A Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1840A>G Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*188T>C Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1940A>C Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*1963C>A Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*2036A>C Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*237G>T Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*301G>T Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*323G>T Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*344T>C Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*355T>C Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*357C>G Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*527G>A Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*561G>A Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*638C>G Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*72T>C Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*742C>G Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*817T>A Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*850C>T Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*864C>T Single submitter mitochondrial complex I deficiency, nuclear type 1
  • c.*905A>C Single submitter mitochondrial complex I deficiency, nuclear type 1
  • p.Ala214Thr Single submitter Inborn genetic diseases ⚠
  • p.Ala218Thr Single submitter Inborn genetic diseases ⚠
  • p.Ala256Thr Single submitter ⚠
  • p.Ala259= Single submitter mitochondrial complex I deficiency, nuclear type 1
  • p.Ala30= Single submitter mitochondrial complex I deficiency, nuclear type 1
  • p.Ala300Thr Single submitter Inborn genetic diseases ⚠
  • p.Ala307Val Single submitter ⚠
  • p.Ala89Thr Single submitter mitochondrial complex I deficiency, nuclear type 21
  • p.Arg132Thr Single submitter Inborn genetic diseases ⚠
  • p.Arg16Pro Single submitter ⚠
  • p.Arg16Trp Single submitter mitochondrial complex I deficiency, nuclear type 1 ⚠
  • p.Arg226Pro Single submitter ⚠
  • p.Arg29Gln Single submitter ⚠
  • p.Arg49del Single submitter
  • p.Arg49Gly Single submitter ⚠
  • p.Arg49Lys Single submitter ⚠
  • p.Arg6His Single submitter Inborn genetic diseases ⚠
  • p.Arg6Ser Single submitter Inborn genetic diseases ⚠
  • p.Asn129Ser Single submitter mitochondrial complex I deficiency, nuclear type 21 ⚠
  • p.Asn136Ser Single submitter Inborn genetic diseases ⚠
  • p.Asn279Thr Single submitter ⚠
  • p.Asn87Ser Single submitter ⚠
  • p.Asp173Val Single submitter Inborn genetic diseases ⚠
  • p.Asp190Asn Single submitter Inborn genetic diseases ⚠
  • p.Asp190Val Single submitter Inborn genetic diseases ⚠
  • p.Asp298Glu Single submitter mitochondrial complex I deficiency, nuclear type 1 ⚠
  • p.Asp96Val Single submitter mitochondrial complex I deficiency, nuclear type 1 ⚠
  • p.Gln197fs Single submitter mitochondrial complex I deficiency, nuclear type 21
  • p.Gln264His Single submitter ⚠
  • p.Gln47Arg Single submitter ⚠
  • p.Gln60Arg Single submitter ⚠
  • p.Glu299Gln Single submitter ⚠
  • p.Glu309Asp Single submitter ⚠
  • p.Gly12Glu Single submitter ⚠
  • p.Gly175Cys Single submitter Inborn genetic diseases ⚠
  • p.Gly255Ser Single submitter ⚠
  • p.Ile201Val Single submitter Inborn genetic diseases ⚠
  • p.Ile70Met Single submitter ⚠
  • p.Leu103Ter Single submitter mitochondrial complex I deficiency, nuclear type 21
  • p.Leu169Trp Single submitter ⚠
  • p.Leu25Pro Single submitter ⚠
  • p.Leu276Phe Single submitter Inborn genetic diseases ⚠
  • p.Leu278Arg Single submitter Inborn genetic diseases ⚠
  • p.Leu57Val Single submitter Inborn genetic diseases ⚠
  • p.Leu92Pro Single submitter Inborn genetic diseases ⚠
  • p.Leu9Phe Single submitter mitochondrial complex I deficiency, nuclear type 1 ⚠
  • p.Lys250Arg Single submitter Inborn genetic diseases ⚠
  • p.Lys67Glu Single submitter mitochondrial complex I deficiency, nuclear type 1 ⚠
  • p.Met117Val Single submitter mitochondrial complex I deficiency
  • p.Met144Val Single submitter Inborn genetic diseases ⚠
  • p.Met184Ile Single submitter Inborn genetic diseases ⚠
  • p.Met216Thr Single submitter ⚠
  • p.Met216Val Single submitter Inborn genetic diseases ⚠
  • p.Pro123Leu Single submitter Inborn genetic diseases
  • p.Pro231Leu Single submitter
  • p.Pro315Leu Single submitter Inborn genetic diseases ⚠
  • p.Pro317His Single submitter ⚠
  • p.Ser126Pro Single submitter ⚠
  • p.Ser128= Single submitter mitochondrial complex I deficiency, nuclear type 1
  • p.Ser14Leu Single submitter Inborn genetic diseases ⚠
  • p.Ser240Asn Single submitter Inborn genetic diseases
  • p.Ser297Gly Single submitter Inborn genetic diseases ⚠
  • p.Thr209Met Single submitter
  • p.Thr209Ser Single submitter mitochondrial complex I deficiency, nuclear type 21 ⚠
  • p.Thr22Ala Single submitter ⚠
  • p.Trp156Cys Single submitter mitochondrial complex I deficiency, nuclear type 21 ⚠
  • p.Trp174Cys Single submitter Inborn genetic diseases ⚠
  • p.Tyr109Cys Single submitter Inborn genetic diseases ⚠
  • p.Val106Met Single submitter ⚠
  • p.Val148Ala Single submitter ⚠
  • p.Val154Ile Single submitter ⚠
  • p.Val191= Single submitter mitochondrial complex I deficiency, nuclear type 1
  • p.Val205Ala Single submitter mitochondrial complex I deficiency, nuclear type 21 ⚠
  • p.Val205Leu Single submitter Inborn genetic diseases ⚠
  • p.Val228Ile Single submitter ⚠
  • p.Val230Met Single submitter Inborn genetic diseases
  • p.Val241Leu Single submitter Inborn genetic diseases ⚠
  • p.Tyr303Asn No assertion criteria mitochondrial complex I deficiency, nuclear type 21 ⚠