NUP188 — 403 ClinVar variants

All ClinVar germline NUP188 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 271 flagged for review →

8 Pathogenic · 1 Pathogenic/Likely pathogenic · 10 Likely pathogenic · 3 Conflicting · 18 Benign · 4 Benign/Likely benign · 72 Likely benign · 287 Uncertain significance

Full NUP188 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 271

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 2

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 211

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 211

Predictors split 58

The independent predictors disagree with each other — read with care.

All NUP188 variants

Pathogenic 8

Pathogenic/Likely pathogenic 1

  • p.Ser1126fs Multiple submitters sandestig-stefanova syndrome

Likely pathogenic 10

Conflicting classifications of pathogenicity 3

Benign 18

  • c.1203+31T>C Multiple submitters sandestig-stefanova syndrome
  • c.1797-24T>C Multiple submitters sandestig-stefanova syndrome
  • c.3516-14A>G Multiple submitters sandestig-stefanova syndrome
  • c.3662-4A>G Multiple submitters sandestig-stefanova syndrome
  • c.4044+6A>C Multiple submitters sandestig-stefanova syndrome
  • p.Ser1532= Multiple submitters sandestig-stefanova syndrome
  • p.Thr390= Multiple submitters
  • p.Ala1087= Single submitter
  • p.Glu1260Asp Single submitter
  • c.2640+10T>C No assertion criteria NUP188-related disorder
  • c.3088-10A>G No assertion criteria NUP188-related disorder
  • c.4509+7G>A No assertion criteria NUP188-related disorder
  • c.5074-5T>C No assertion criteria NUP188-related disorder
  • p.His152= No assertion criteria NUP188-related disorder
  • p.His741= No assertion criteria NUP188-related disorder
  • p.Ile279= No assertion criteria NUP188-related disorder
  • p.Leu979= No assertion criteria NUP188-related disorder
  • p.Thr1693= No assertion criteria NUP188-related disorder

Benign/Likely benign 4

Likely benign 72

Uncertain significance 287