OCLN — 160 ClinVar variants
All ClinVar germline OCLN variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 78 flagged for review →
11 Pathogenic · 1 Pathogenic/Likely pathogenic · 10 Likely pathogenic · 7 Conflicting · 7 Benign · 5 Benign/Likely benign · 35 Likely benign · 84 Uncertain significance
Full OCLN gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 78
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 3
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
OCLN p.Ala151Val
Conflicting
Single submitter
pseudo-TORCH syndrome 1
-
OCLN p.Pro291Ser
Conflicting
Single submitter
Inborn genetic diseases
- OCLN p.Val157Phe Conflicting Single submitter
Predictors lean, ClinVar uncertain 56
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
OCLN p.Ala152Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
OCLN p.Gln41Glu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
OCLN p.Ile212Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
- OCLN p.Met70Val Uncertain significance Multiple submitters
-
OCLN p.Thr158Ala
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
OCLN p.Thr158Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
OCLN p.Thr59Pro
Uncertain significance
Multiple submitters
pseudo-TORCH syndrome 1
-
OCLN p.Val157Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
OCLN p.Ala146Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Ala244Val
Uncertain significance
Single submitter
Inborn genetic diseases
- OCLN p.Ala246Val Uncertain significance Single submitter
- OCLN p.Ala78Val Uncertain significance Single submitter
-
OCLN p.Arg170Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- OCLN p.Arg335Gln Uncertain significance Single submitter
-
OCLN p.Arg367Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Arg367His
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Asp27Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Gly125Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Gly127Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Gly371Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Gly406Ser
Uncertain significance
Single submitter
pseudo-TORCH syndrome 1
-
OCLN p.His285Asn
Uncertain significance
Single submitter
Inborn genetic diseases
- OCLN p.His397Gln Uncertain significance Single submitter
- OCLN p.Ile161Thr Uncertain significance Single submitter
-
OCLN p.Ile184Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- OCLN p.Ile191Val Uncertain significance Single submitter
- OCLN p.Ile245Val Uncertain significance Single submitter
- OCLN p.Ile279Val Uncertain significance Single submitter
-
OCLN p.Ile510Met
Uncertain significance
Single submitter
Inborn genetic diseases
- OCLN p.Ile67Phe Uncertain significance Single submitter
-
OCLN p.Ile72Ser
Uncertain significance
Single submitter
pseudo-TORCH syndrome 1
-
OCLN p.Leu39Val
Uncertain significance
Single submitter
Inborn genetic diseases
- OCLN p.Lys334Glu Uncertain significance Single submitter
-
OCLN p.Lys501Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Met144Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Met165Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Met271Val
Uncertain significance
Single submitter
pseudo-TORCH syndrome 1
-
OCLN p.Pro105Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Pro355Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Ser116Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Ser163Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Ser2Pro
Uncertain significance
Single submitter
pseudo-TORCH syndrome 1
-
OCLN p.Ser369Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Ser505Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Ser85Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- OCLN p.Thr132Ala Uncertain significance Single submitter
-
OCLN p.Thr59Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- OCLN p.Tyr104Phe Uncertain significance Single submitter
-
OCLN p.Tyr193Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Tyr213His
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Tyr236Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Tyr287Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Tyr315Phe
Uncertain significance
Single submitter
pseudo-TORCH syndrome 1
-
OCLN p.Tyr517Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Val160Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- OCLN p.Val238Ile Uncertain significance Single submitter
Predictors split 19
The independent predictors disagree with each other — read with care.
- OCLN p.Arg66Leu Uncertain significance Multiple submitters
- OCLN p.Gln211Lys Uncertain significance Multiple submitters
- OCLN p.Lys504Asn Likely benign Multiple submitters
-
OCLN p.Thr86Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
OCLN p.Tyr120His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
OCLN p.Ala201Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Arg4Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Gln202His
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Gly108Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- OCLN p.His54Gln Uncertain significance Single submitter
-
OCLN p.His54Pro
Uncertain significance
Single submitter
Inborn genetic diseases
- OCLN p.Leu153Ser Uncertain significance Single submitter
- OCLN p.Phe257Val Uncertain significance Single submitter
-
OCLN p.Pro134Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- OCLN p.Trp281Leu Uncertain significance Single submitter
-
OCLN p.Tyr106His
Uncertain significance
Single submitter
Inborn genetic diseases
-
OCLN p.Tyr124Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- OCLN p.Lys138Gln Uncertain significance No assertion criteria
-
OCLN p.Phe219Ser
Pathogenic
No assertion criteria
pseudo-TORCH syndrome 1
All OCLN variants
Pathogenic 11
- p.Arg36Ter Multiple submitters pseudo-TORCH syndrome 1
- c.1037+5G>A Single submitter pseudo-TORCH syndrome 1
- p.Glu339fs Single submitter
- p.Glu442Ter Single submitter pseudo-TORCH syndrome 1
- p.Phe46fs Single submitter
- p.Trp297Ter Single submitter OCLN-related disorder
- p.Tyr12Ter Single submitter
- p.Tyr171Ter Single submitter pseudo-TORCH syndrome 1
- p.Lys18_Trp297del No assertion criteria pseudo-TORCH syndrome 1
- p.Lys57fs No assertion criteria pseudo-TORCH syndrome 1
- p.Phe219Ser No assertion criteria pseudo-TORCH syndrome 1 ⚠
Pathogenic/Likely pathogenic 1
- c.1037+1G>A Multiple submitters pseudo-TORCH syndrome 1
Likely pathogenic 10
- c.1254-1G>A Single submitter pseudo-TORCH syndrome 1
- c.50+2T>C Single submitter pseudo-TORCH syndrome 1
- p.Asn328fs Single submitter pseudo-TORCH syndrome 1
- p.Gln211fs Single submitter pseudo-TORCH syndrome 1
- p.Gln242Ter Single submitter
- p.Gln352Ter Single submitter
- p.Gly515fs Single submitter pseudo-TORCH syndrome 1
- p.Ser8fs Single submitter
- p.Trp58Ter Single submitter OCLN-related disorder
- p.Ser85fs No assertion criteria pseudo-TORCH syndrome 1
Conflicting classifications of pathogenicity 7
- c.51-12T>C Single submitter
- p.Ala151Val Single submitter pseudo-TORCH syndrome 1 ⚠
- p.Gly406= Single submitter Inborn genetic diseases
- p.Pro291Ser Single submitter Inborn genetic diseases ⚠
- p.Trp58fs Single submitter pseudo-TORCH syndrome 1
- p.Tyr128= Single submitter pseudo-TORCH syndrome 1
- p.Val157Phe Single submitter ⚠
Benign 7
- c.-69+86C>T Multiple submitters
- p.Leu233= Multiple submitters
- p.Val308Leu Multiple submitters
- c.51-143T>C Single submitter
- c.51-224T>C Single submitter
- c.-69+232C>T Single submitter
- c.-86C>T Single submitter
Benign/Likely benign 5
- p.Ala152Val Multiple submitters
- p.Met252Val Multiple submitters
- p.Pro24Ala Multiple submitters pseudo-TORCH syndrome 1
- p.Thr225= Multiple submitters
- p.Val308Met Multiple submitters
Likely benign 35
- c.730-7T>C Multiple submitters
- c.*308C>T Multiple submitters
- p.Lys504Asn Multiple submitters ⚠
- c.1254-142C>A Single submitter
- c.50+13T>C Single submitter
- c.50+18T>C Single submitter
- c.51-8C>A Single submitter
- c.729+19G>T Single submitter
- c.729+288C>T Single submitter
- c.730-323C>T Single submitter
- c.891+248dup Single submitter
- c.891+5941C>G Single submitter
- c.-69+16C>G Single submitter
- c.-75G>A Single submitter
- p.Ala152= Single submitter
- p.Ala84= Single submitter
- p.Arg268= Single submitter
- p.Gly119= Single submitter
- p.Gly209= Single submitter
- p.Gly371Ser Single submitter Inborn genetic diseases
- p.Ile79= Single submitter
- p.Leu142= Single submitter
- p.Leu182= Single submitter
- p.Leu249= Single submitter
- p.Leu68= Single submitter
- p.Leu71= Single submitter
- p.Lys270= Single submitter
- p.Lys433= Single submitter
- p.Pro19= Single submitter
- p.Pro346= Single submitter Inborn genetic diseases
- p.Ser2= Single submitter
- p.Ser370= Single submitter
- p.Tyr120= Single submitter
- p.Tyr171= Single submitter
- p.Tyr467Cys Single submitter
Uncertain significance 84
- c.891+3_891+6del Multiple submitters
- p.Ala152Thr Multiple submitters Inborn genetic diseases ⚠
- p.Arg66Leu Multiple submitters ⚠
- p.Gln211Lys Multiple submitters ⚠
- p.Gln41Glu Multiple submitters Inborn genetic diseases ⚠
- p.Ile212Val Multiple submitters Inborn genetic diseases ⚠
- p.Met70Val Multiple submitters ⚠
- p.Thr158Ala Multiple submitters Inborn genetic diseases ⚠
- p.Thr158Ile Multiple submitters Inborn genetic diseases ⚠
- p.Thr59Pro Multiple submitters pseudo-TORCH syndrome 1 ⚠
- p.Thr86Met Multiple submitters Inborn genetic diseases ⚠
- p.Tyr106Asp Multiple submitters Inborn genetic diseases
- p.Tyr120His Multiple submitters Inborn genetic diseases ⚠
- p.Tyr220Cys Multiple submitters Inborn genetic diseases
- p.Val157Ile Multiple submitters Inborn genetic diseases ⚠
- p.118YG[5] Single submitter
- p.Ala146Gly Single submitter Inborn genetic diseases ⚠
- p.Ala201Val Single submitter Inborn genetic diseases ⚠
- p.Ala244Val Single submitter Inborn genetic diseases ⚠
- p.Ala246Val Single submitter ⚠
- p.Ala78Val Single submitter ⚠
- p.Arg170Ser Single submitter Inborn genetic diseases ⚠
- p.Arg269del Single submitter Inborn genetic diseases
- p.Arg335Gln Single submitter ⚠
- p.Arg367Cys Single submitter Inborn genetic diseases ⚠
- p.Arg367His Single submitter Inborn genetic diseases ⚠
- p.Arg4Ser Single submitter Inborn genetic diseases ⚠
- p.Asn278Asp Single submitter
- p.Asp27Asn Single submitter Inborn genetic diseases ⚠
- p.Gln202His Single submitter Inborn genetic diseases ⚠
- p.Gly108Arg Single submitter Inborn genetic diseases ⚠
- p.Gly125Ser Single submitter Inborn genetic diseases ⚠
- p.Gly127Asp Single submitter Inborn genetic diseases ⚠
- p.Gly371Cys Single submitter Inborn genetic diseases ⚠
- p.Gly406Ser Single submitter pseudo-TORCH syndrome 1 ⚠
- p.His285Asn Single submitter Inborn genetic diseases ⚠
- p.His397Gln Single submitter ⚠
- p.His54Gln Single submitter ⚠
- p.His54Pro Single submitter Inborn genetic diseases ⚠
- p.Ile161Thr Single submitter ⚠
- p.Ile176Thr Single submitter
- p.Ile184Thr Single submitter Inborn genetic diseases ⚠
- p.Ile191Val Single submitter ⚠
- p.Ile245Val Single submitter ⚠
- p.Ile279Val Single submitter ⚠
- p.Ile510Met Single submitter Inborn genetic diseases ⚠
- p.Ile67Phe Single submitter ⚠
- p.Ile72Ser Single submitter pseudo-TORCH syndrome 1 ⚠
- p.Leu153Ser Single submitter ⚠
- p.Leu39Val Single submitter Inborn genetic diseases ⚠
- p.Lys334Glu Single submitter ⚠
- p.Lys501Arg Single submitter Inborn genetic diseases ⚠
- p.Met144Leu Single submitter Inborn genetic diseases ⚠
- p.Met165Leu Single submitter Inborn genetic diseases ⚠
- p.Met271Val Single submitter pseudo-TORCH syndrome 1 ⚠
- p.Phe257Val Single submitter ⚠
- p.Pro105Ser Single submitter Inborn genetic diseases ⚠
- p.Pro134Ala Single submitter Inborn genetic diseases ⚠
- p.Pro355Ser Single submitter Inborn genetic diseases ⚠
- p.Ser116Asn Single submitter Inborn genetic diseases ⚠
- p.Ser163Cys Single submitter Inborn genetic diseases ⚠
- p.Ser2Pro Single submitter pseudo-TORCH syndrome 1 ⚠
- p.Ser369Thr Single submitter Inborn genetic diseases ⚠
- p.Ser505Arg Single submitter Inborn genetic diseases ⚠
- p.Ser85Cys Single submitter Inborn genetic diseases ⚠
- p.Thr132Ala Single submitter ⚠
- p.Thr59Ile Single submitter Inborn genetic diseases ⚠
- p.Trp281Leu Single submitter ⚠
- p.Tyr104Phe Single submitter ⚠
- p.Tyr106His Single submitter Inborn genetic diseases ⚠
- p.Tyr124Cys Single submitter Inborn genetic diseases ⚠
- p.Tyr172fs Single submitter pseudo-TORCH syndrome 1
- p.Tyr193Cys Single submitter Inborn genetic diseases ⚠
- p.Tyr213His Single submitter Inborn genetic diseases ⚠
- p.Tyr236Cys Single submitter Inborn genetic diseases ⚠
- p.Tyr287Cys Single submitter Inborn genetic diseases ⚠
- p.Tyr315Phe Single submitter pseudo-TORCH syndrome 1 ⚠
- p.Tyr402Cys Single submitter Inborn genetic diseases
- p.Tyr517Cys Single submitter Inborn genetic diseases ⚠
- p.Val160Ala Single submitter Inborn genetic diseases ⚠
- p.Val238Ile Single submitter ⚠
- c.-68-2A>G No assertion criteria
- p.Asp426fs No assertion criteria
- p.Lys138Gln No assertion criteria ⚠