OSBPL2 — 304 ClinVar variants
All ClinVar germline OSBPL2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 93 flagged for review →
4 Pathogenic · 1 Likely pathogenic · 7 Conflicting · 48 Benign · 14 Benign/Likely benign · 120 Likely benign · 110 Uncertain significance
Full OSBPL2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 93
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 6
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
- OSBPL2 p.Arg43Met Conflicting Single submitter
-
OSBPL2 p.Gln445Arg
Conflicting
Single submitter
Inborn genetic diseases
-
OSBPL2 p.Lys278Arg
Conflicting
Single submitter
Inborn genetic diseases
- OSBPL2 p.Pro371Leu Conflicting Single submitter
-
OSBPL2 p.Val239Ile
Conflicting
Single submitter
Inborn genetic diseases
-
OSBPL2 p.Val349Met
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 75
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- OSBPL2 p.Ala442Val Uncertain significance Multiple submitters
-
OSBPL2 p.Asp475Asn
Uncertain significance
Multiple submitters
Inborn genetic diseases
- OSBPL2 p.Gln125Pro Uncertain significance Multiple submitters
-
OSBPL2 p.Gln58Pro
Uncertain significance
Multiple submitters
Inborn genetic diseases
- OSBPL2 p.Gly149Ser Uncertain significance Multiple submitters
-
OSBPL2 p.Gly245Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
OSBPL2 p.Ile34Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
OSBPL2 p.Ile479Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
OSBPL2 p.Pro126Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
OSBPL2 p.Ser20Pro
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
OSBPL2 p.Thr446Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
- OSBPL2 p.Val11Ile Uncertain significance Multiple submitters
- OSBPL2 p.Val384Met Uncertain significance Multiple submitters
-
OSBPL2 p.Val76Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
OSBPL2 p.Ala96Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
OSBPL2 p.Arg365Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
OSBPL2 p.Asn191Ser
Uncertain significance
Single submitter
autosomal dominant nonsyndromic hearing loss 67
- OSBPL2 p.Asn234Ser Uncertain significance Single submitter
-
OSBPL2 p.Asn234Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.Asn2Ser Uncertain significance Single submitter
- OSBPL2 p.Asn367Asp Uncertain significance Single submitter
- OSBPL2 p.Asn372Ser Uncertain significance Single submitter
- OSBPL2 p.Asn42His Uncertain significance Single submitter
-
OSBPL2 p.Asp15Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.Asp37Asn Uncertain significance Single submitter
-
OSBPL2 p.Asp475His
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.Asp478Gly Uncertain significance Single submitter
- OSBPL2 p.Gln105Glu Uncertain significance Single submitter
- OSBPL2 p.Gln125His Uncertain significance Single submitter
-
OSBPL2 p.Gln320Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
OSBPL2 p.Gln355Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.Gln53Arg Uncertain significance Single submitter
- OSBPL2 p.Glu390Ala Uncertain significance Single submitter
- OSBPL2 p.Glu422Lys Uncertain significance Single submitter
- OSBPL2 p.Glu432Ala Uncertain significance Single submitter
- OSBPL2 p.Glu54Asp Uncertain significance Single submitter
- OSBPL2 p.Gly208Val Uncertain significance Single submitter
- OSBPL2 p.Gly21Ala Uncertain significance Single submitter
- OSBPL2 p.Gly253Arg Uncertain significance Single submitter
- OSBPL2 p.Gly337Arg Uncertain significance Single submitter
-
OSBPL2 p.Gly410Ser
Uncertain significance
Single submitter
OSBPL2-related disorder
- OSBPL2 p.Gly56Arg Uncertain significance Single submitter
-
OSBPL2 p.His179Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.His192Arg Uncertain significance Single submitter
- OSBPL2 p.His197Tyr Uncertain significance Single submitter
- OSBPL2 p.His281Asn Uncertain significance Single submitter
- OSBPL2 p.His60Arg Uncertain significance Single submitter
- OSBPL2 p.Ile243Val Uncertain significance Single submitter
-
OSBPL2 p.Ile244Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
OSBPL2 p.Ile34Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
OSBPL2 p.Ile366Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
OSBPL2 p.Ile44Phe
Uncertain significance
Single submitter
autosomal dominant nonsyndromic hearing loss 67
- OSBPL2 p.Ile95Val Uncertain significance Single submitter
-
OSBPL2 p.Lys203Met
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.Lys319Thr Uncertain significance Single submitter
- OSBPL2 p.Met130Leu Uncertain significance Single submitter
- OSBPL2 p.Met416Ile Uncertain significance Single submitter
- OSBPL2 p.Met93Thr Uncertain significance Single submitter
-
OSBPL2 p.Phe317Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.Pro124Leu Uncertain significance Single submitter
-
OSBPL2 p.Pro311Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.Pro348Arg Uncertain significance Single submitter
-
OSBPL2 p.Pro51Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.Ser173Leu Uncertain significance Single submitter
-
OSBPL2 p.Ser336Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.Ser341Gly Uncertain significance Single submitter
-
OSBPL2 p.Thr148Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.Thr400Met Uncertain significance Single submitter
- OSBPL2 p.Thr459Ile Uncertain significance Single submitter
-
OSBPL2 p.Thr62Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
OSBPL2 p.Val114Met
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.Val211Met Uncertain significance Single submitter
- OSBPL2 p.Val242Ile Uncertain significance Single submitter
-
OSBPL2 p.Val30Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
OSBPL2 p.Val354Met
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 12
The independent predictors disagree with each other — read with care.
- OSBPL2 p.Glu428Gly Likely benign Multiple submitters
-
OSBPL2 p.Ala184Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
OSBPL2 p.Ala213Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.Arg425Gln Uncertain significance Single submitter
- OSBPL2 p.Cys122Trp Uncertain significance Single submitter
-
OSBPL2 p.Glu256Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
OSBPL2 p.Leu280Phe
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.Phe103Cys Uncertain significance Single submitter
-
OSBPL2 p.Pro272Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- OSBPL2 p.Ser20Phe Uncertain significance Single submitter
-
OSBPL2 p.Ser381Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
OSBPL2 p.Thr108Met
Uncertain significance
No assertion criteria
OSBPL2-related disorder
All OSBPL2 variants
Pathogenic 4
- p.Tyr160fs Single submitter
- p.Arg50fs No assertion criteria autosomal dominant nonsyndromic hearing loss 67
- p.Gln53fs No assertion criteria autosomal dominant nonsyndromic hearing loss 67
- p.His60fs No assertion criteria autosomal dominant nonsyndromic hearing loss 67
Likely pathogenic 1
- p.Glu54fs Single submitter autosomal dominant nonsyndromic hearing loss 67
Conflicting classifications of pathogenicity 7
- p.Arg43Met Single submitter ⚠
- p.Gln445Arg Single submitter Inborn genetic diseases ⚠
- p.Gly285= Single submitter
- p.Lys278Arg Single submitter Inborn genetic diseases ⚠
- p.Pro371Leu Single submitter ⚠
- p.Val239Ile Single submitter Inborn genetic diseases ⚠
- p.Val349Met Single submitter Inborn genetic diseases ⚠
Benign 48
- c.1125+15A>G Multiple submitters autosomal dominant nonsyndromic hearing loss 67
- c.1126-9G>A Multiple submitters
- c.1249+4C>T Multiple submitters autosomal dominant nonsyndromic hearing loss 67
- c.1250-217T>C Multiple submitters
- c.1341-6C>T Multiple submitters
- c.259-95C>T Multiple submitters
- c.37+23G>A Multiple submitters autosomal dominant nonsyndromic hearing loss 67
- c.38-6G>A Multiple submitters
- c.394-117G>T Multiple submitters
- c.394-17C>T Multiple submitters autosomal dominant nonsyndromic hearing loss 67
- c.492-159A>G Multiple submitters
- c.492-187T>A Multiple submitters
- c.675-144C>T Multiple submitters
- c.675-36T>G Multiple submitters
- c.675-99G>A Multiple submitters
- c.782+31C>T Multiple submitters
- c.782+60G>A Multiple submitters
- c.872+8C>T Multiple submitters
- c.872+99G>A Multiple submitters
- c.996+156A>G Multiple submitters
- c.996+261A>G Multiple submitters
- c.996+312A>G Multiple submitters
- p.Ala26Thr Multiple submitters
- p.Leu221= Multiple submitters
- p.Ser72= Multiple submitters
- c.1125+144G>A Single submitter
- c.1126-195C>T Single submitter
- c.1340+34GCGGGGAGGCCCCACACACACCTGGGGACG[4] Single submitter
- c.1341-32A>C Single submitter
- c.182+205G>C Single submitter
- c.182+311T>A Single submitter
- c.259-321G>T Single submitter
- c.259-48G>A Single submitter
- c.37+152C>A Single submitter
- c.38-227_38-209del Single submitter
- c.394-18C>T Single submitter
- c.674+14C>T Single submitter
- c.674+268A>G Single submitter
- c.782+17G>A Single submitter
- c.872+41T>C Single submitter
- c.873-185G>A Single submitter
- c.873-271C>G Single submitter
- c.873-326A>G Single submitter
- c.996+218_996+219del Single submitter
- c.996+219del Single submitter
- c.997-32G>A Single submitter
- c.997-33C>T Single submitter
- p.Gln144= Single submitter
Benign/Likely benign 14
- c.1125+20C>T Multiple submitters
- c.1249+11G>A Multiple submitters
- c.1250-3del Multiple submitters
- c.182+15G>A Multiple submitters
- c.394-20C>A Multiple submitters
- c.674+15G>A Multiple submitters
- c.674+9C>T Multiple submitters
- c.996+20del Multiple submitters
- c.*23C>G Multiple submitters
- c.*23C>T Multiple submitters
- p.His264Gln Multiple submitters
- p.Pro181= Multiple submitters
- p.Ser75= Multiple submitters
- p.Thr396= Multiple submitters
Likely benign 120
- c.1125+223G>T Multiple submitters
- c.1125+257C>T Multiple submitters
- c.1125+271A>G Multiple submitters
- c.1125+35G>A Multiple submitters
- c.1126-14G>T Multiple submitters
- c.1250-138T>C Multiple submitters
- c.1250-24C>G Multiple submitters
- c.258+9G>A Multiple submitters
- c.393+11G>T Multiple submitters
- c.394-15G>A Multiple submitters
- c.873-12A>G Multiple submitters
- c.996+15G>A Multiple submitters
- c.996+6G>T Multiple submitters
- c.997-43G>A Multiple submitters
- c.*14C>T Multiple submitters
- p.Ala10= Multiple submitters
- p.Ala184= Multiple submitters
- p.Arg409= Multiple submitters
- p.Asn387= Multiple submitters
- p.Asp342= Multiple submitters Inborn genetic diseases
- p.Asp345= Multiple submitters
- p.Asp346= Multiple submitters
- p.Glu428Gly Multiple submitters ⚠
- p.His118= Multiple submitters
- p.His179= Multiple submitters
- p.Ile200Val Multiple submitters
- p.Leu306= Multiple submitters
- p.Phe270= Multiple submitters
- p.Pro65= Multiple submitters
- p.Ser143= Multiple submitters
- p.Ser63= Multiple submitters
- p.Thr220= Multiple submitters
- p.Thr303= Multiple submitters
- p.Thr400= Multiple submitters
- p.Thr92= Multiple submitters
- c.1125+17G>T Single submitter
- c.1126-14G>A Single submitter
- c.1126-15_1126-14del Single submitter
- c.1126-309G>A Single submitter
- c.1249+127A>G Single submitter
- c.1249+9A>G Single submitter
- c.1250-172C>A Single submitter
- c.1250-173del Single submitter
- c.1340+17C>G Single submitter
- c.1341-18C>A Single submitter
- c.1341-19C>G Single submitter
- c.1341-20C>T Single submitter
- c.182+261C>T Single submitter
- c.182+8C>G Single submitter
- c.183-12T>G Single submitter
- c.183-150C>T Single submitter
- c.183-239G>A Single submitter
- c.183-31_183-13del Single submitter
- c.183-4G>C Single submitter
- c.258+132T>A Single submitter
- c.258+8C>T Single submitter
- c.259-5T>C Single submitter
- c.37+102C>G Single submitter
- c.38-7C>T Single submitter
- c.393+13G>T Single submitter
- c.393+44T>C Single submitter
- c.394-16C>T Single submitter
- c.394-18C>G Single submitter
- c.394-20C>T Single submitter
- c.491+26A>G Single submitter
- c.492-10T>C Single submitter
- c.492-302G>A Single submitter
- c.675-11T>C Single submitter
- c.675-140G>A Single submitter
- c.675-15C>T Single submitter
- c.675-20G>A Single submitter
- c.675-346G>A Single submitter
- c.675-4A>G Single submitter
- c.782+15C>T Single submitter
- c.782+16C>T Single submitter
- c.782+3G>A Single submitter
- c.872+15A>C Single submitter
- c.873-173G>A Single submitter
- c.996+20C>T Single submitter
- c.996+219dup Single submitter
- c.996+60G>A Single submitter
- c.997-19G>A Single submitter
- c.997-27G>C Single submitter
- c.*11G>A Single submitter
- p.Ala213= Single submitter
- p.Ala442Thr Single submitter Inborn genetic diseases
- p.Arg119= Single submitter
- p.Asn2= Single submitter
- p.Asn372= Single submitter
- p.Asn98= Single submitter
- p.Asp340= Single submitter
- p.Cys238= Single submitter
- p.Gln125= Single submitter
- p.Glu22= Single submitter
- p.Gly168= Single submitter
- p.Gly359= Single submitter
- p.His113= Single submitter
- p.His286Tyr Single submitter Inborn genetic diseases
- p.Ile95= Single submitter
- p.Leu280= Single submitter
- p.Lys203= Single submitter
- p.Lys423= Single submitter
- p.Lys46= Single submitter
- p.Phe379= Single submitter
- p.Phe449= Single submitter
- p.Pro180= Single submitter
- p.Pro460= Single submitter
- p.Pro51= Single submitter
- p.Ser173= Single submitter
- p.Ser313= Single submitter
- p.Ser336= Single submitter
- p.Ser474= Single submitter
- p.Ter481= Single submitter
- p.Thr353= Single submitter
- p.Thr383= Single submitter
- p.Thr391= Single submitter
- p.Thr446= Single submitter
- p.Thr457= Single submitter
- p.Tyr201= Single submitter
- c.37+9_37+13del No assertion criteria OSBPL2-related disorder
Uncertain significance 110
- p.Ala442Val Multiple submitters ⚠
- p.Arg434Trp Multiple submitters Inborn genetic diseases
- p.Asp475Asn Multiple submitters Inborn genetic diseases ⚠
- p.Gln125Pro Multiple submitters ⚠
- p.Gln58Pro Multiple submitters Inborn genetic diseases ⚠
- p.Glu284Gly Multiple submitters Inborn genetic diseases
- p.Gly149Ser Multiple submitters ⚠
- p.Gly245Arg Multiple submitters Inborn genetic diseases ⚠
- p.Ile34Val Multiple submitters Inborn genetic diseases ⚠
- p.Ile479Thr Multiple submitters Inborn genetic diseases ⚠
- p.Lys203Gln Multiple submitters Inborn genetic diseases
- p.Pro126Ser Multiple submitters Inborn genetic diseases ⚠
- p.Ser20Pro Multiple submitters Inborn genetic diseases ⚠
- p.Thr303Met Multiple submitters Inborn genetic diseases
- p.Thr446Met Multiple submitters Inborn genetic diseases ⚠
- p.Val11Ile Multiple submitters ⚠
- p.Val384Met Multiple submitters ⚠
- p.Val76Met Multiple submitters Inborn genetic diseases ⚠
- c.1250-1G>C Single submitter
- c.1341-5G>A Single submitter
- c.183-4G>A Single submitter
- c.492-8T>C Single submitter
- c.675-13G>A Single submitter
- c.872+4G>T Single submitter
- c.872+6T>G Single submitter
- c.-128-1G>C Single submitter
- c.*4C>T Single submitter
- p.Ala184Val Single submitter Inborn genetic diseases ⚠
- p.Ala213Thr Single submitter Inborn genetic diseases ⚠
- p.Ala96Thr Single submitter Inborn genetic diseases ⚠
- p.Arg365Lys Single submitter Inborn genetic diseases ⚠
- p.Arg425Gln Single submitter ⚠
- p.Asn191Ser Single submitter autosomal dominant nonsyndromic hearing loss 67 ⚠
- p.Asn234Ser Single submitter ⚠
- p.Asn234Tyr Single submitter Inborn genetic diseases ⚠
- p.Asn2Ser Single submitter ⚠
- p.Asn367Asp Single submitter ⚠
- p.Asn372Ser Single submitter ⚠
- p.Asn42His Single submitter ⚠
- p.Asp15Glu Single submitter Inborn genetic diseases ⚠
- p.Asp37Asn Single submitter ⚠
- p.Asp475His Single submitter Inborn genetic diseases ⚠
- p.Asp478Gly Single submitter ⚠
- p.Cys122Trp Single submitter ⚠
- p.Gln105Glu Single submitter ⚠
- p.Gln125His Single submitter ⚠
- p.Gln131= Single submitter
- p.Gln251Ter Single submitter
- p.Gln320Glu Single submitter Inborn genetic diseases ⚠
- p.Gln355Arg Single submitter Inborn genetic diseases ⚠
- p.Gln53Arg Single submitter ⚠
- p.Glu256Gln Single submitter Inborn genetic diseases ⚠
- p.Glu390Ala Single submitter ⚠
- p.Glu422Lys Single submitter ⚠
- p.Glu432Ala Single submitter ⚠
- p.Glu54Asp Single submitter ⚠
- p.Gly208Val Single submitter ⚠
- p.Gly21Ala Single submitter ⚠
- p.Gly253Arg Single submitter ⚠
- p.Gly274= Single submitter
- p.Gly337Arg Single submitter ⚠
- p.Gly410Ser Single submitter OSBPL2-related disorder ⚠
- p.Gly56Arg Single submitter ⚠
- p.His179Gln Single submitter Inborn genetic diseases ⚠
- p.His192Arg Single submitter ⚠
- p.His197Tyr Single submitter ⚠
- p.His281Asn Single submitter ⚠
- p.His326fs Single submitter
- p.His60Arg Single submitter ⚠
- p.Ile243Val Single submitter ⚠
- p.Ile244Val Single submitter Inborn genetic diseases ⚠
- p.Ile34Thr Single submitter Inborn genetic diseases ⚠
- p.Ile366Met Single submitter Inborn genetic diseases ⚠
- p.Ile44Phe Single submitter autosomal dominant nonsyndromic hearing loss 67 ⚠
- p.Ile95Val Single submitter ⚠
- p.Leu280Phe Single submitter Inborn genetic diseases ⚠
- p.Leu332= Single submitter
- p.Leu363Phe Single submitter Inborn genetic diseases
- p.Lys203Met Single submitter Inborn genetic diseases ⚠
- p.Lys319Thr Single submitter ⚠
- p.Lys395= Single submitter
- p.Met130Leu Single submitter ⚠
- p.Met416Ile Single submitter ⚠
- p.Met93Thr Single submitter ⚠
- p.Phe103Cys Single submitter ⚠
- p.Phe296_Met297delinsLeuTrp Single submitter autosomal dominant nonsyndromic hearing loss 67
- p.Phe317Ser Single submitter Inborn genetic diseases ⚠
- p.Pro124Leu Single submitter ⚠
- p.Pro272Leu Single submitter Inborn genetic diseases ⚠
- p.Pro311Ala Single submitter Inborn genetic diseases ⚠
- p.Pro348Arg Single submitter ⚠
- p.Pro51Ser Single submitter Inborn genetic diseases ⚠
- p.Pro65Leu Single submitter
- p.Ser173Leu Single submitter ⚠
- p.Ser20Phe Single submitter ⚠
- p.Ser336Ala Single submitter Inborn genetic diseases ⚠
- p.Ser341Gly Single submitter ⚠
- p.Ser381Gly Single submitter Inborn genetic diseases ⚠
- p.Thr148Ile Single submitter Inborn genetic diseases ⚠
- p.Thr303fs Single submitter
- p.Thr400Met Single submitter ⚠
- p.Thr459Ile Single submitter ⚠
- p.Thr62Ile Single submitter Inborn genetic diseases ⚠
- p.Trp232Ter Single submitter
- p.Val114Met Single submitter Inborn genetic diseases ⚠
- p.Val211Met Single submitter ⚠
- p.Val242Ile Single submitter ⚠
- p.Val30Asp Single submitter Inborn genetic diseases ⚠
- p.Val354Met Single submitter Inborn genetic diseases ⚠
- p.Thr108Met No assertion criteria OSBPL2-related disorder ⚠