PARS2 — 222 ClinVar variants
All ClinVar germline PARS2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 124 flagged for review →
1 Pathogenic · 7 Likely pathogenic · 7 Conflicting · 8 Benign · 7 Benign/Likely benign · 62 Likely benign · 130 Uncertain significance
Full PARS2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 124
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 1
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
-
PARS2 p.Pro293Ala
Likely pathogenic
Single submitter
developmental and epileptic encephalopathy, 75
Predictors agree, ClinVar conflicts 3
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
PARS2 p.Arg346Trp
Conflicting
Single submitter
PARS2-related disorder
-
PARS2 p.Pro364Arg
Conflicting
Single submitter
developmental and epileptic encephalopathy, 75
-
PARS2 p.Val95Ile
Conflicting
Single submitter
PARS2-related disorder
Predictors lean, ClinVar uncertain 95
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
PARS2 p.Ala372Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Arg103Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
- PARS2 p.Arg186Gly Uncertain significance Multiple submitters
-
PARS2 p.Arg186Lys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Arg189Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Arg200His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Arg275Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
- PARS2 p.Arg38Gln Uncertain significance Multiple submitters
- PARS2 p.Arg44His Uncertain significance Multiple submitters
- PARS2 p.Arg55Trp Uncertain significance Multiple submitters
- PARS2 p.Asn291Ser Uncertain significance Multiple submitters
-
PARS2 p.Asn50Lys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Cys292Arg
Uncertain significance
Multiple submitters
developmental and epileptic encephalopathy, 75
-
PARS2 p.Gly252Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Gly419Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Lys187Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Met98Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Ser22Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Ser58Phe
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Thr16Ala
Uncertain significance
Multiple submitters
Inborn genetic diseases
- PARS2 p.Thr326Ile Uncertain significance Multiple submitters
- PARS2 p.Val102Met Uncertain significance Multiple submitters
-
PARS2 p.Val56Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
- PARS2 p.Ala13Ser Uncertain significance Single submitter
- PARS2 p.Ala33Thr Uncertain significance Single submitter
- PARS2 p.Ala386Val Uncertain significance Single submitter
- PARS2 p.Ala445Val Uncertain significance Single submitter
- PARS2 p.Ala97Val Uncertain significance Single submitter
- PARS2 p.Arg133Trp Uncertain significance Single submitter
- PARS2 p.Arg19Cys Uncertain significance Single submitter
-
PARS2 p.Arg200Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Arg269Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Arg269Trp Uncertain significance Single submitter
-
PARS2 p.Arg346Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Arg362Gly
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Arg38Trp Uncertain significance Single submitter
-
PARS2 p.Arg39Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Arg44Leu Uncertain significance Single submitter
-
PARS2 p.Arg52Trp
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Asn322Ser Uncertain significance Single submitter
-
PARS2 p.Asp190His
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Asp247Asn Uncertain significance Single submitter
-
PARS2 p.Asp286Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Asp443Gly
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Cys32Arg Uncertain significance Single submitter
-
PARS2 p.Gln110Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Gln169Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Gln20His
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Gln47His Uncertain significance Single submitter
-
PARS2 p.Glu203Lys
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 75
- PARS2 p.Glu388Lys Uncertain significance Single submitter
-
PARS2 p.Glu442Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Gly201Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Gly253Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Gly341Ser Uncertain significance Single submitter
-
PARS2 p.Gly343Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.His257Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Ile434Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Ile80Thr
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 75
-
PARS2 p.Leu11Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Leu122Phe
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Leu21Pro Uncertain significance Single submitter
-
PARS2 p.Leu270Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Leu389Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Leu409Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Lys175Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Lys175Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Lys301Arg Uncertain significance Single submitter
- PARS2 p.Phe212Cys Uncertain significance Single submitter
-
PARS2 p.Phe212Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Pro12Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Pro192Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Pro194Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Pro332Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Pro369Ser Uncertain significance Single submitter
-
PARS2 p.Pro377Ser
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 75
- PARS2 p.Ser123Ile Uncertain significance Single submitter
- PARS2 p.Ser224Asn Uncertain significance Single submitter
-
PARS2 p.Ser232Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Ser319Thr Uncertain significance Single submitter
- PARS2 p.Ser381Gly Uncertain significance Single submitter
- PARS2 p.Ser70Thr Uncertain significance Single submitter
-
PARS2 p.Thr163Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Thr250Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Thr398Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Trp134Arg Uncertain significance Single submitter
- PARS2 p.Tyr370His Uncertain significance Single submitter
- PARS2 p.Tyr88His Uncertain significance Single submitter
-
PARS2 p.Tyr93His
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Val102Ala Uncertain significance Single submitter
-
PARS2 p.Val184Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Val263Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- PARS2 p.Val457Ala Uncertain significance Single submitter
- PARS2 p.Val45Met Uncertain significance Single submitter
- PARS2 p.Val475Ile Uncertain significance Single submitter
Predictors split 25
The independent predictors disagree with each other — read with care.
-
PARS2 p.Arg195His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Arg72Trp
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Arg96His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Asp412Asn
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Glu108Gly
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Gly114Ser
Uncertain significance
Multiple submitters
developmental and epileptic encephalopathy, 75
-
PARS2 p.Lys236Glu
Uncertain significance
Multiple submitters
developmental and epileptic encephalopathy, 75
-
PARS2 p.Pro124Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Pro377Ala
Uncertain significance
Multiple submitters
developmental and epileptic encephalopathy, 75
-
PARS2 p.Thr357Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PARS2 p.Ala167Thr
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 75
-
PARS2 p.Arg202Gly
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 75
- PARS2 p.Arg96Cys Uncertain significance Single submitter
- PARS2 p.Asp247Tyr Uncertain significance Single submitter
-
PARS2 p.Asp359Tyr
Conflicting
Single submitter
developmental and epileptic encephalopathy, 75
- PARS2 p.Cys87Tyr Uncertain significance Single submitter
-
PARS2 p.Gly455Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Leu441Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Leu79Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Lys316Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Phe325Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Pro293Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Pro444Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PARS2 p.Ser279Leu
Conflicting
Single submitter
developmental and epileptic encephalopathy, 75
-
PARS2 p.Val449Ile
Likely benign
Single submitter
Inborn genetic diseases
All PARS2 variants
Pathogenic 1
- p.Pro377_Lys378insTer No assertion criteria developmental and epileptic encephalopathy, 75
Likely pathogenic 7
- p.Gln296Ter Multiple submitters developmental and epileptic encephalopathy, 75
- p.Asp424Val Single submitter developmental and epileptic encephalopathy, 75
- p.Gln221fs Single submitter
- p.Gln289Ter Single submitter Inborn genetic diseases
- p.Pro293Ala Single submitter developmental and epileptic encephalopathy, 75 ⚠
- p.Trp128Ter Single submitter
- p.Trp134Ter Single submitter
Conflicting classifications of pathogenicity 7
- p.Arg346Trp Single submitter PARS2-related disorder ⚠
- p.Arg36del Single submitter
- p.Asp359Tyr Single submitter developmental and epileptic encephalopathy, 75 ⚠
- p.Pro364Arg Single submitter developmental and epileptic encephalopathy, 75 ⚠
- p.Ser279Leu Single submitter developmental and epileptic encephalopathy, 75 ⚠
- p.Thr454= Single submitter
- p.Val95Ile Single submitter PARS2-related disorder ⚠
Benign 8
- c.*217G>A Multiple submitters
- p.Arg28Ser Multiple submitters
- p.Asn235Ser Multiple submitters
- p.Leu21Arg Multiple submitters
- c.-29-162G>C Single submitter
- c.-29-166G>A Single submitter
- c.-29-216A>G Single submitter
- c.-29-226G>A Single submitter
Benign/Likely benign 7
Likely benign 62
- c.*145A>G Multiple submitters
- c.*210C>T Multiple submitters
- c.*239T>G Multiple submitters
- p.Ala280= Multiple submitters
- p.His158= Multiple submitters
- p.Ile435= Multiple submitters
- p.Leu122= Multiple submitters
- p.Leu393= Multiple submitters
- p.Leu468= Multiple submitters
- p.Pro92= Multiple submitters
- p.Ser18= Multiple submitters
- c.-15C>T Single submitter
- c.-27G>A Single submitter
- c.-29-153T>C Single submitter
- c.-30+11G>A Single submitter
- c.-30+20T>C Single submitter
- c.-31C>T Single submitter
- p.Ala385= Single submitter
- p.Ala400= Single submitter
- p.Arg103= Single submitter
- p.Arg193= Single submitter
- p.Arg19His Single submitter Inborn genetic diseases
- p.Arg55= Single submitter
- p.Asn50= Single submitter
- p.Cys292= Single submitter
- p.Gln169= Single submitter
- p.Gln296Arg Single submitter
- p.Glu108= Single submitter
- p.Glu159= Single submitter
- p.Glu258= Single submitter
- p.Gly113= Single submitter
- p.His31= Single submitter
- p.His405= Single submitter
- p.Ile251= Single submitter
- p.Ile352= Single submitter
- p.Ile375= Single submitter
- p.Ile390Thr Single submitter Inborn genetic diseases
- p.Ile418= Single submitter
- p.Leu101= Single submitter
- p.Leu172= Single submitter
- p.Leu180= Single submitter
- p.Leu225= Single submitter
- p.Leu237= Single submitter
- p.Leu51= Single submitter
- p.Leu59= Single submitter
- p.Met282Leu Single submitter Inborn genetic diseases
- p.Pro12= Single submitter
- p.Pro178= Single submitter
- p.Pro85= Single submitter
- p.Ser173= Single submitter
- p.Ser214= Single submitter
- p.Ser318= Single submitter
- p.Thr250= Single submitter
- p.Thr284= Single submitter
- p.Thr357= Single submitter
- p.Thr414= Single submitter
- p.Thr67= Single submitter
- p.Thr94= Single submitter
- p.Val361= Single submitter
- p.Val408= Single submitter
- p.Val449Ile Single submitter Inborn genetic diseases ⚠
- p.Val56= Single submitter
Uncertain significance 130
- p.Ala372Thr Multiple submitters Inborn genetic diseases ⚠
- p.Arg103Gln Multiple submitters Inborn genetic diseases ⚠
- p.Arg186Gly Multiple submitters ⚠
- p.Arg186Lys Multiple submitters Inborn genetic diseases ⚠
- p.Arg189Gln Multiple submitters Inborn genetic diseases ⚠
- p.Arg195His Multiple submitters Inborn genetic diseases ⚠
- p.Arg200His Multiple submitters Inborn genetic diseases ⚠
- p.Arg275Cys Multiple submitters Inborn genetic diseases ⚠
- p.Arg38Gln Multiple submitters ⚠
- p.Arg44His Multiple submitters ⚠
- p.Arg55Trp Multiple submitters ⚠
- p.Arg72Trp Multiple submitters Inborn genetic diseases ⚠
- p.Arg96His Multiple submitters Inborn genetic diseases ⚠
- p.Asn291Ser Multiple submitters ⚠
- p.Asn50Lys Multiple submitters Inborn genetic diseases ⚠
- p.Asp412Asn Multiple submitters Inborn genetic diseases ⚠
- p.Cys292Arg Multiple submitters developmental and epileptic encephalopathy, 75 ⚠
- p.Glu108Gly Multiple submitters Inborn genetic diseases ⚠
- p.Gly114Ser Multiple submitters developmental and epileptic encephalopathy, 75 ⚠
- p.Gly252Arg Multiple submitters Inborn genetic diseases ⚠
- p.Gly419Arg Multiple submitters Inborn genetic diseases ⚠
- p.Lys175Glu Multiple submitters
- p.Lys187Arg Multiple submitters Inborn genetic diseases ⚠
- p.Lys236Glu Multiple submitters developmental and epileptic encephalopathy, 75 ⚠
- p.Met98Ile Multiple submitters Inborn genetic diseases ⚠
- p.Pro124Leu Multiple submitters Inborn genetic diseases ⚠
- p.Pro377Ala Multiple submitters developmental and epileptic encephalopathy, 75 ⚠
- p.Ser22Cys Multiple submitters Inborn genetic diseases ⚠
- p.Ser58Phe Multiple submitters Inborn genetic diseases ⚠
- p.Thr16Ala Multiple submitters Inborn genetic diseases ⚠
- p.Thr326Ile Multiple submitters ⚠
- p.Thr357Ile Multiple submitters Inborn genetic diseases ⚠
- p.Val102Met Multiple submitters ⚠
- p.Val56Leu Multiple submitters Inborn genetic diseases ⚠
- p.Ala13Ser Single submitter ⚠
- p.Ala167Thr Single submitter developmental and epileptic encephalopathy, 75 ⚠
- p.Ala33Thr Single submitter ⚠
- p.Ala386Val Single submitter ⚠
- p.Ala445Val Single submitter ⚠
- p.Ala97Val Single submitter ⚠
- p.Arg133Trp Single submitter ⚠
- p.Arg143Ter Single submitter
- p.Arg19Cys Single submitter ⚠
- p.Arg200Cys Single submitter Inborn genetic diseases ⚠
- p.Arg202Gly Single submitter developmental and epileptic encephalopathy, 75 ⚠
- p.Arg202Ter Single submitter
- p.Arg269Gln Single submitter Inborn genetic diseases ⚠
- p.Arg269Trp Single submitter ⚠
- p.Arg346Gln Single submitter Inborn genetic diseases ⚠
- p.Arg362Gly Single submitter Inborn genetic diseases ⚠
- p.Arg38Trp Single submitter ⚠
- p.Arg39Cys Single submitter Inborn genetic diseases ⚠
- p.Arg44Leu Single submitter ⚠
- p.Arg52Trp Single submitter Inborn genetic diseases ⚠
- p.Arg96Cys Single submitter ⚠
- p.Asn322Ser Single submitter ⚠
- p.Asp190His Single submitter Inborn genetic diseases ⚠
- p.Asp247Asn Single submitter ⚠
- p.Asp247Tyr Single submitter ⚠
- p.Asp286Asn Single submitter Inborn genetic diseases ⚠
- p.Asp443Gly Single submitter Inborn genetic diseases ⚠
- p.Cys32Arg Single submitter ⚠
- p.Cys87Tyr Single submitter ⚠
- p.Gln110Glu Single submitter Inborn genetic diseases ⚠
- p.Gln169Arg Single submitter Inborn genetic diseases ⚠
- p.Gln20His Single submitter Inborn genetic diseases ⚠
- p.Gln245Ter Single submitter
- p.Gln47His Single submitter ⚠
- p.Glu203Lys Single submitter developmental and epileptic encephalopathy, 75 ⚠
- p.Glu388Lys Single submitter ⚠
- p.Glu442Lys Single submitter Inborn genetic diseases ⚠
- p.Gly201Asp Single submitter Inborn genetic diseases ⚠
- p.Gly253Asp Single submitter Inborn genetic diseases ⚠
- p.Gly341Ser Single submitter ⚠
- p.Gly343Asp Single submitter Inborn genetic diseases ⚠
- p.Gly437fs Single submitter developmental and epileptic encephalopathy, 75
- p.Gly455Asp Single submitter Inborn genetic diseases ⚠
- p.His257Arg Single submitter Inborn genetic diseases ⚠
- p.Ile434Thr Single submitter Inborn genetic diseases ⚠
- p.Ile80Thr Single submitter developmental and epileptic encephalopathy, 75 ⚠
- p.Leu11Phe Single submitter Inborn genetic diseases ⚠
- p.Leu11Ter Single submitter developmental and epileptic encephalopathy, 75
- p.Leu122Phe Single submitter Inborn genetic diseases ⚠
- p.Leu21Pro Single submitter ⚠
- p.Leu270Val Single submitter Inborn genetic diseases ⚠
- p.Leu389Phe Single submitter Inborn genetic diseases ⚠
- p.Leu409Phe Single submitter Inborn genetic diseases ⚠
- p.Leu441Gln Single submitter Inborn genetic diseases ⚠
- p.Leu79Val Single submitter Inborn genetic diseases ⚠
- p.Lys175Arg Single submitter Inborn genetic diseases ⚠
- p.Lys175Gln Single submitter Inborn genetic diseases ⚠
- p.Lys243Asn Single submitter developmental and epileptic encephalopathy, 75
- p.Lys301Arg Single submitter ⚠
- p.Lys316Glu Single submitter Inborn genetic diseases ⚠
- p.Met1Val Single submitter
- p.Phe212Cys Single submitter ⚠
- p.Phe212Ser Single submitter Inborn genetic diseases ⚠
- p.Phe325Val Single submitter Inborn genetic diseases ⚠
- p.Phe447Cys Single submitter Inborn genetic diseases
- p.Pro12Ser Single submitter Inborn genetic diseases ⚠
- p.Pro192Thr Single submitter Inborn genetic diseases ⚠
- p.Pro194Leu Single submitter Inborn genetic diseases ⚠
- p.Pro293Arg Single submitter Inborn genetic diseases ⚠
- p.Pro332Leu Single submitter Inborn genetic diseases ⚠
- p.Pro369Ser Single submitter ⚠
- p.Pro377Ser Single submitter developmental and epileptic encephalopathy, 75 ⚠
- p.Pro444Ser Single submitter Inborn genetic diseases ⚠
- p.Pro471fs Single submitter
- p.Ser123Ile Single submitter ⚠
- p.Ser224Asn Single submitter ⚠
- p.Ser232Ile Single submitter Inborn genetic diseases ⚠
- p.Ser319Thr Single submitter ⚠
- p.Ser381Gly Single submitter ⚠
- p.Ser70Thr Single submitter ⚠
- p.Thr163Ala Single submitter Inborn genetic diseases ⚠
- p.Thr250Ile Single submitter Inborn genetic diseases ⚠
- p.Thr345Ala Single submitter
- p.Thr398Ile Single submitter Inborn genetic diseases ⚠
- p.Trp134Arg Single submitter ⚠
- p.Tyr370His Single submitter ⚠
- p.Tyr88His Single submitter ⚠
- p.Tyr93His Single submitter Inborn genetic diseases ⚠
- p.Val102Ala Single submitter ⚠
- p.Val184Met Single submitter Inborn genetic diseases ⚠
- p.Val263Ala Single submitter Inborn genetic diseases ⚠
- p.Val361fs Single submitter
- p.Val457Ala Single submitter ⚠
- p.Val45Met Single submitter ⚠
- p.Val475Ile Single submitter ⚠
- p.Lys187Ter No assertion criteria myoepithelial tumor