PAX8 — 238 ClinVar variants

All ClinVar germline PAX8 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 69 flagged for review →

11 Pathogenic · 2 Pathogenic/Likely pathogenic · 11 Likely pathogenic · 17 Conflicting · 38 Benign · 6 Benign/Likely benign · 30 Likely benign · 123 Uncertain significance

Full PAX8 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 69

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 6

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 48

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

All PAX8 variants

Pathogenic 11

  • p.Arg31His Multiple submitters PAX8-related disorder
  • c.191+1G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Arg108Ter Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Arg133Trp No assertion criteria congenital hypothyroidism
  • p.Cys57Tyr No assertion criteria hypothyroidism, congenital, nongoitrous, 2
  • p.Gln40Pro No assertion criteria hypothyroidism, congenital, nongoitrous, 2
  • p.Ile34Asn No assertion criteria congenital hypothyroidism
  • p.Leu153fs No assertion criteria hypothyroidism, congenital, nongoitrous, 2
  • p.Leu62Arg No assertion criteria hypothyroidism, congenital, nongoitrous, 2
  • p.Ser48Phe No assertion criteria hypothyroidism, congenital, nongoitrous, 2
  • p.Ser54Gly No assertion criteria hypothyroidism, congenital, nongoitrous, 2

Pathogenic/Likely pathogenic 2

  • p.Arg133Gln Multiple submitters PAX8-related disorder
  • p.Arg31Cys Multiple submitters hypothyroidism, congenital, nongoitrous, 2

Likely pathogenic 11

  • c.898+1G>C Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Asp46Asn Single submitter
  • p.Glu310Ter Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Glu313fs Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Glu90del Single submitter congenital hypothyroidism
  • p.Gly69Ser Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Ser54Cys Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Thr68Ile Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Val35fs Single submitter PAX8-related disorder
  • p.Lys80fs No assertion criteria hypothyroidism, congenital, nongoitrous, 2
  • p.Ser79Phe No assertion criteria hypothyroidism, congenital, nongoitrous, 2

Conflicting classifications of pathogenicity 17

  • c.1087+4C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.1189+15G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.479-6C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.898+11C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*2276G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Arg43= Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Asn343Ser Single submitter Inborn genetic diseases ⚠
  • p.Gly384Ser Single submitter hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Pro167= Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Pro372= Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Pro409= Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Ser327= Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Ser337Ala Single submitter Inborn genetic diseases ⚠
  • p.Thr311Ser Single submitter Inborn genetic diseases ⚠
  • p.Thr370Met Single submitter hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Tyr295= Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Val116Ile Single submitter hypothyroidism, congenital, nongoitrous, 2 ⚠

Benign 38

Benign/Likely benign 6

  • c.*187A>G Multiple submitters hypothyroidism, congenital, nongoitrous, 2
  • p.Ala439= Multiple submitters hypothyroidism, congenital, nongoitrous, 2
  • p.Lys135Arg Multiple submitters hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Phe329Leu Multiple submitters hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Ser124= Multiple submitters
  • p.Ser414= Multiple submitters hypothyroidism, congenital, nongoitrous, 2

Likely benign 30

Uncertain significance 123

  • c.*1765G>A Multiple submitters hypothyroidism, congenital, nongoitrous, 2
  • c.*290G>A Multiple submitters hypothyroidism, congenital, nongoitrous, 2
  • c.*845G>A Multiple submitters hypothyroidism, congenital, nongoitrous, 2
  • p.Gln354Glu Multiple submitters Inborn genetic diseases ⚠
  • p.Gly11Arg Multiple submitters Inborn genetic diseases ⚠
  • p.Leu266Ser Multiple submitters Inborn genetic diseases ⚠
  • p.Met102Ile Multiple submitters Inborn genetic diseases ⚠
  • p.Pro252Ala Multiple submitters hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Pro321His Multiple submitters Inborn genetic diseases ⚠
  • p.Pro409Arg Multiple submitters Inborn genetic diseases
  • p.Pro437Leu Multiple submitters Inborn genetic diseases ⚠
  • p.Ser427Phe Multiple submitters Inborn genetic diseases ⚠
  • p.Thr158Met Multiple submitters Inborn genetic diseases ⚠
  • c.1277-10A>G Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.191+6C>G Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.898+12G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.-75-4G>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*1029G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*1060C>G Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*1066G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*1186G>C Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*1393A>G Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*1457G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*1490G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*1807C>G Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*1942C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*1977T>C Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*2033C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*2044G>C Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*204C>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*2192C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*2193G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*2231C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*2312G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*2320G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*2326A>G Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*2368C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*2409C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*2475C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*2517C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*2527A>G Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*343G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*368G>C Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*372C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*423C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*472C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*501C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*527G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*612G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*664T>C Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*697C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*703G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*708C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*764C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*766C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*789G>A Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*844C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*897C>T Single submitter hypothyroidism, congenital, nongoitrous, 2
  • c.*938C>G Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Ala19Thr Single submitter ⚠
  • p.Ala19Val Single submitter Inborn genetic diseases
  • p.Ala349Pro Single submitter Inborn genetic diseases ⚠
  • p.Ala416Thr Single submitter ⚠
  • p.Ala439Val Single submitter Inborn genetic diseases ⚠
  • p.Arg108= Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Arg108Gln Single submitter Inborn genetic diseases ⚠
  • p.Arg224Cys Single submitter hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Arg33Cys Single submitter ⚠
  • p.Arg49His Single submitter ⚠
  • p.Arg52Cys Single submitter Inborn genetic diseases ⚠
  • p.Arg64Met Single submitter hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Arg97Cys Single submitter Inborn genetic diseases ⚠
  • p.Asn119Asp Single submitter Inborn genetic diseases
  • p.Asn99= Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Asp109His Single submitter ⚠
  • p.Asp273Asn Single submitter hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Asp300Glu Single submitter Inborn genetic diseases ⚠
  • p.Asp331Val Single submitter Inborn genetic diseases
  • p.Asp94Asn Single submitter hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Cys147= Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Gln259His Single submitter hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Gln293His Single submitter Inborn genetic diseases ⚠
  • p.Gln333His Single submitter Inborn genetic diseases ⚠
  • p.Gln333Pro Single submitter Inborn genetic diseases ⚠
  • p.Glu313Asp Single submitter Inborn genetic diseases ⚠
  • p.Glu313Val Single submitter Inborn genetic diseases ⚠
  • p.Gly156Arg Single submitter Inborn genetic diseases ⚠
  • p.Gly286= Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Gly338Arg Single submitter Inborn genetic diseases ⚠
  • p.Gly382fs Single submitter
  • p.Gly397Arg Single submitter hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Gly41Asp Single submitter ⚠
  • p.Gly63Val Single submitter Inborn genetic diseases ⚠
  • p.Gly78Ser Single submitter hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Gly93Ala Single submitter ⚠
  • p.His347Arg Single submitter Inborn genetic diseases ⚠
  • p.Ile307Met Single submitter Inborn genetic diseases ⚠
  • p.Ile307Thr Single submitter Inborn genetic diseases ⚠
  • p.Leu425= Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Lys197Asn Single submitter hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Lys308Arg Single submitter Inborn genetic diseases ⚠
  • p.Met366Ile Single submitter Inborn genetic diseases ⚠
  • p.Phe419Cys Single submitter ⚠
  • p.Pro263Leu Single submitter ⚠
  • p.Pro27= Single submitter hypothyroidism, congenital, nongoitrous, 2
  • p.Pro2Leu Single submitter hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Pro312Arg Single submitter Inborn genetic diseases ⚠
  • p.Pro312Ser Single submitter Inborn genetic diseases ⚠
  • p.Pro321Ser Single submitter Inborn genetic diseases ⚠
  • p.Pro346His Single submitter Inborn genetic diseases ⚠
  • p.Pro346Ser Single submitter Inborn genetic diseases ⚠
  • p.Pro86Arg Single submitter ⚠
  • p.Ser154Asn Single submitter Inborn genetic diseases ⚠
  • p.Ser201Asn Single submitter hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Ser325Tyr Single submitter Inborn genetic diseases ⚠
  • p.Ser423Gly Single submitter hypothyroidism, congenital, nongoitrous, 2 ⚠
  • p.Ser54_His55delinsArgAsn Single submitter
  • p.Thr283Met Single submitter ⚠
  • p.Thr408Asn Single submitter Inborn genetic diseases ⚠
  • p.Trp417Cys Single submitter ⚠
  • p.Val339fs Single submitter
  • p.Val351Met Single submitter ⚠
  • p.Val395= Single submitter hypothyroidism, congenital, nongoitrous, 2