PBRM1 — 84 ClinVar variants
All ClinVar germline PBRM1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 6 flagged for review →
1 Pathogenic · 52 Benign · 1 Benign/Likely benign · 23 Likely benign · 7 Uncertain significance
Full PBRM1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 6
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors lean, ClinVar uncertain 5
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- PBRM1 p.Pro1598Ser Uncertain significance Multiple submitters
-
PBRM1 p.Arg1015Gln
Uncertain significance
Single submitter
nonpapillary renal cell carcinoma
-
PBRM1 p.Pro1515Ala
Uncertain significance
Single submitter
nonpapillary renal cell carcinoma
-
PBRM1 p.Val479Ile
Uncertain significance
Single submitter
Hereditary cancer
- PBRM1 p.Glu1333Asp Uncertain significance No assertion criteria
Predictors split 1
The independent predictors disagree with each other — read with care.
-
PBRM1 p.Glu1333Lys
Likely benign
Single submitter
Hereditary cancer
All PBRM1 variants
Pathogenic 1
- p.Asp1348fs No assertion criteria clear cell renal carcinoma
Benign 52
- c.1443+60T>G Multiple submitters
- c.1970-5T>C Multiple submitters
- c.236+57A>G Multiple submitters
- c.2612+22T>C Multiple submitters
- c.2824+51G>C Multiple submitters
- c.2824+98A>G Multiple submitters
- c.3011-101G>A Multiple submitters
- c.3169-10C>A Multiple submitters
- c.3169-41C>T Multiple submitters
- c.3736+44A>G Multiple submitters
- c.3737-110A>G Multiple submitters
- c.385-11C>G Multiple submitters
- c.385-60A>G Multiple submitters
- c.4654+85C>T Multiple submitters
- c.4725+48T>C Multiple submitters
- c.529-28G>C Multiple submitters
- c.645+91C>T Multiple submitters
- c.899+99C>T Multiple submitters
- c.900-119C>T Multiple submitters
- p.Ala866= Multiple submitters
- c.138+283dup Single submitter
- c.1443+188A>T Single submitter
- c.1444-254C>G Single submitter
- c.1541+270dup Single submitter
- c.1864-276T>C Single submitter
- c.1969+277G>C Single submitter
- c.1970-162A>T Single submitter
- c.237-139del Single submitter
- c.237-139dup Single submitter
- c.237-140_237-139dup Single submitter
- c.2825-194T>A Single submitter
- c.3011-297_3011-296insAAG Single submitter
- c.3011-313G>A Single submitter
- c.3011-61dup Single submitter
- c.3736+142A>G Single submitter
- c.3737-291C>T Single submitter
- c.384+8A>G Single submitter
- c.385-19del Single submitter
- c.385-19dup Single submitter
- c.3921-155C>T Single submitter
- c.4131+205_4131+226del Single submitter
- c.4132-190del Single submitter
- c.4942+183GTTTT[3] Single submitter
- c.4943-195dup Single submitter
- c.528+288G>A Single submitter
- c.646-261T>G Single submitter
- c.646-301G>A Single submitter
- c.813+155C>T Single submitter
- c.899+189C>G Single submitter
- c.899+226C>T Single submitter
- c.996-129T>G Single submitter
- c.996-4del Single submitter
Benign/Likely benign 1
- p.Ile493= Multiple submitters
Likely benign 23
- c.996-4G>T Multiple submitters
- c.1301+11T>G Single submitter
- c.4725+17G>A Single submitter
- c.4943-195del Single submitter
- c.528+11A>G Single submitter
- c.529-98del Single submitter
- c.646-7C>T Single submitter
- c.996-18C>T Single submitter
- c.996-4_996-3insA Single submitter
- c.996-5del Single submitter
- c.996-5dup Single submitter
- c.-15-135del Single submitter
- p.Glu1333Lys Single submitter Hereditary cancer ⚠
- p.Glu679= Single submitter
- p.Gly1122= Single submitter
- p.Gly369= Single submitter
- p.Leu1320= Single submitter
- p.Leu527= Single submitter
- p.Lys471= Single submitter
- p.Pro1150= Single submitter
- p.Pro1591= Single submitter
- p.Ser1114= Single submitter
- p.Thr1362= Single submitter
Uncertain significance 7
- p.Pro1598Ser Multiple submitters ⚠
- c.1587-3C>G Single submitter PBRM1-related BAFopathy
- p.Arg1015Gln Single submitter nonpapillary renal cell carcinoma ⚠
- p.Ile279fs Single submitter
- p.Pro1515Ala Single submitter nonpapillary renal cell carcinoma ⚠
- p.Val479Ile Single submitter Hereditary cancer ⚠
- p.Glu1333Asp No assertion criteria ⚠