PIGL — 151 ClinVar variants
All ClinVar germline PIGL variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 58 flagged for review →
10 Pathogenic · 1 Pathogenic/Likely pathogenic · 11 Likely pathogenic · 11 Conflicting · 10 Benign · 2 Benign/Likely benign · 36 Likely benign · 70 Uncertain significance
Full PIGL gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 58
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 4
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
PIGL p.Asp113Tyr
Conflicting
Single submitter
CHIME syndrome
-
PIGL p.Ile238Val
Conflicting
Single submitter
Inborn genetic diseases
-
PIGL p.Leu142Met
Conflicting
Single submitter
CHIME syndrome
-
PIGL p.Ser30Asn
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 40
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
PIGL p.Ala54Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PIGL p.Arg242Pro
Uncertain significance
Multiple submitters
CHIME syndrome
-
PIGL p.Arg242Trp
Uncertain significance
Multiple submitters
CHIME syndrome
-
PIGL p.Arg245Lys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PIGL p.Arg88His
Uncertain significance
Multiple submitters
CHIME syndrome
-
PIGL p.Asp116Asn
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PIGL p.Asp147Asn
Uncertain significance
Multiple submitters
Inborn genetic diseases
- PIGL p.Glu2Asp Uncertain significance Multiple submitters
-
PIGL p.His203Asp
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PIGL p.Leu6Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PIGL p.Pro59His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PIGL p.Thr181Met
Uncertain significance
Multiple submitters
CHIME syndrome
-
PIGL p.Thr204Lys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PIGL p.Thr204Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PIGL p.Val210Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PIGL p.Ala10Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PIGL p.Ala54Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- PIGL p.Arg129Gly Uncertain significance Single submitter
-
PIGL p.Arg189Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- PIGL p.Arg227Cys Uncertain significance Single submitter
-
PIGL p.Arg88Gly
Uncertain significance
Single submitter
CHIME syndrome
- PIGL p.Cys8Trp Uncertain significance Single submitter
-
PIGL p.Gln133Arg
Uncertain significance
Single submitter
CHIME syndrome
-
PIGL p.Gln218Glu
Uncertain significance
Single submitter
CHIME syndrome
-
PIGL p.Glu86Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
PIGL p.Ile135Val
Uncertain significance
Single submitter
Inborn genetic diseases
- PIGL p.Ile158Thr Uncertain significance Single submitter
- PIGL p.Ile192Leu Uncertain significance Single submitter
-
PIGL p.Leu231Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
PIGL p.Leu64Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- PIGL p.Leu73Pro Uncertain significance Single submitter
-
PIGL p.Leu99Trp
Uncertain significance
Single submitter
CHIME syndrome
-
PIGL p.Lys89Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
PIGL p.Phe57Leu
Uncertain significance
Single submitter
CHIME syndrome
-
PIGL p.Pro50Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- PIGL p.Trp232Arg Uncertain significance Single submitter
-
PIGL p.Tyr161Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- PIGL p.Val137Met Uncertain significance Single submitter
-
PIGL p.Val179Leu
Uncertain significance
Single submitter
CHIME syndrome
- PIGL p.Val9Leu Uncertain significance Single submitter
Predictors split 14
The independent predictors disagree with each other — read with care.
-
PIGL p.Leu202Pro
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PIGL p.Pro198Leu
Uncertain significance
Multiple submitters
CHIME syndrome
-
PIGL p.Val179Met
Uncertain significance
Multiple submitters
CHIME syndrome
-
PIGL p.Ala222Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PIGL p.Arg189His
Uncertain significance
Single submitter
Inborn genetic diseases
-
PIGL p.Gly149Ala
Conflicting
Single submitter
CHIME syndrome
-
PIGL p.Gly149Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
PIGL p.Ile109Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PIGL p.Leu199Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- PIGL p.Leu211Pro Uncertain significance Single submitter
- PIGL p.Leu236Phe Uncertain significance Single submitter
-
PIGL p.Leu6Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
PIGL p.Leu7Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
PIGL p.Pro102Ala
Uncertain significance
Single submitter
Inborn genetic diseases
All PIGL variants
Pathogenic 10
- c.336-2A>G Multiple submitters
- c.427-1G>A Multiple submitters CHIME syndrome
- p.Leu167Pro Multiple submitters PIGL-related disorder
- p.Glu91fs Single submitter
- p.Gly38_Ala39insTer Single submitter
- p.Leu131fs Single submitter
- p.Trp20Ter Single submitter
- p.Val9fs Single submitter
- p.Gln218Ter No assertion criteria CHIME syndrome
- p.Leu92fs No assertion criteria CHIME syndrome
Pathogenic/Likely pathogenic 1
- p.Arg234His Multiple submitters
Likely pathogenic 11
- c.660+1G>T Multiple submitters CHIME syndrome
- p.Arg88Cys Multiple submitters CHIME syndrome
- c.236-4664_335+2566del Single submitter CHIME syndrome
- c.494+1G>A Single submitter CHIME syndrome
- c.494+2T>C Single submitter PIGL-related disorder
- c.660+1G>A Single submitter
- p.Arg242fs Single submitter
- p.Asp52fs Single submitter CHIME syndrome
- p.Phe146Leu Single submitter hyperphosphatasia with intellectual disability syndrome 1
- p.Tyr161Ter Single submitter CHIME syndrome
- p.Asp52Asn No assertion criteria
Conflicting classifications of pathogenicity 11
- c.526+10G>A Single submitter CHIME syndrome
- p.Asp113Tyr Single submitter CHIME syndrome ⚠
- p.Gly149Ala Single submitter CHIME syndrome ⚠
- p.Ile238Val Single submitter Inborn genetic diseases ⚠
- p.Leu142Met Single submitter CHIME syndrome ⚠
- p.Leu160= Single submitter CHIME syndrome
- p.Leu199= Single submitter CHIME syndrome
- p.Phe209= Single submitter CHIME syndrome
- p.Pro118= Single submitter CHIME syndrome
- p.Ser178= Single submitter CHIME syndrome
- p.Ser30Asn Single submitter Inborn genetic diseases ⚠
Benign 10
- c.494+60G>C Multiple submitters
- c.660+68C>A Multiple submitters
- c.660+97T>C Multiple submitters
- c.*182A>G Multiple submitters CHIME syndrome
- c.*20A>G Multiple submitters CHIME syndrome
- c.236-29del Single submitter
- c.427-256A>C Single submitter
- c.495-203C>T Single submitter
- c.660+53dup Single submitter
- c.*364G>A Single submitter CHIME syndrome
Benign/Likely benign 2
Likely benign 36
- c.235+1_235+10dup Single submitter
- c.335+7T>C Single submitter
- c.335+9T>C Single submitter
- c.336-14C>T Single submitter
- c.336-17G>A Single submitter
- c.426+10C>T Single submitter
- c.426+8G>T Single submitter
- c.494+13G>A Single submitter
- c.494+15G>A Single submitter
- c.495-16C>T Single submitter
- c.495-18G>C Single submitter
- c.495-65C>G Single submitter
- c.527-17G>C Single submitter
- c.527-5T>C Single submitter
- c.527-9T>C Single submitter
- c.660+8T>C Single submitter
- p.Ala128= Single submitter
- p.Ala48= Single submitter
- p.Arg189= Single submitter
- p.Arg234= Single submitter
- p.Arg235His Single submitter
- p.Arg27= Single submitter
- p.Asn111= Single submitter
- p.Asn111Lys Single submitter
- p.Asn186= Single submitter
- p.Asn212= Single submitter
- p.Asn247= Single submitter
- p.Gln121= Single submitter
- p.Gln229= Single submitter
- p.Ile108= Single submitter
- p.Leu103Pro Single submitter Inborn genetic diseases
- p.Leu44= Single submitter
- p.Leu7= Single submitter
- p.Thr181= Single submitter
- p.Thr204= Single submitter
- p.Tyr243= Single submitter
Uncertain significance 70
- p.Ala54Val Multiple submitters Inborn genetic diseases ⚠
- p.Arg165= Multiple submitters CHIME syndrome
- p.Arg242Pro Multiple submitters CHIME syndrome ⚠
- p.Arg242Trp Multiple submitters CHIME syndrome ⚠
- p.Arg245Lys Multiple submitters Inborn genetic diseases ⚠
- p.Arg88His Multiple submitters CHIME syndrome ⚠
- p.Asp116Asn Multiple submitters Inborn genetic diseases ⚠
- p.Asp147Asn Multiple submitters Inborn genetic diseases ⚠
- p.Glu2Asp Multiple submitters ⚠
- p.His203Asp Multiple submitters Inborn genetic diseases ⚠
- p.Leu202Pro Multiple submitters Inborn genetic diseases ⚠
- p.Leu6Arg Multiple submitters Inborn genetic diseases ⚠
- p.Met55Val Multiple submitters Inborn genetic diseases
- p.Pro198Leu Multiple submitters CHIME syndrome ⚠
- p.Pro59His Multiple submitters Inborn genetic diseases ⚠
- p.Thr181Met Multiple submitters CHIME syndrome ⚠
- p.Thr204Lys Multiple submitters Inborn genetic diseases ⚠
- p.Thr204Met Multiple submitters Inborn genetic diseases ⚠
- p.Val179Met Multiple submitters CHIME syndrome ⚠
- p.Val210Met Multiple submitters Inborn genetic diseases ⚠
- c.336-3T>C Single submitter
- c.426+14T>C Single submitter CHIME syndrome
- c.426+8G>A Single submitter CHIME syndrome
- c.660+5G>A Single submitter
- c.*184A>C Single submitter CHIME syndrome
- c.*185A>C Single submitter CHIME syndrome
- c.*318C>A Single submitter CHIME syndrome
- c.*324A>G Single submitter CHIME syndrome
- p.Ala10= Single submitter CHIME syndrome
- p.Ala10Val Single submitter Inborn genetic diseases ⚠
- p.Ala12Glu Single submitter Inborn genetic diseases
- p.Ala222Ser Single submitter Inborn genetic diseases ⚠
- p.Ala54Thr Single submitter Inborn genetic diseases ⚠
- p.Arg129Gly Single submitter ⚠
- p.Arg189His Single submitter Inborn genetic diseases ⚠
- p.Arg189Leu Single submitter Inborn genetic diseases ⚠
- p.Arg227Cys Single submitter ⚠
- p.Arg242Gln Single submitter Inborn genetic diseases
- p.Arg88Gly Single submitter CHIME syndrome ⚠
- p.Asn247Ser Single submitter
- p.Asp116_Pro118del Single submitter Ichthyosis and erythrokeratoderma
- p.Cys8Trp Single submitter ⚠
- p.Gln133Arg Single submitter CHIME syndrome ⚠
- p.Gln218Glu Single submitter CHIME syndrome ⚠
- p.Glu86Asp Single submitter Inborn genetic diseases ⚠
- p.Gly149Glu Single submitter Inborn genetic diseases ⚠
- p.Ile109Thr Single submitter Inborn genetic diseases ⚠
- p.Ile135Val Single submitter Inborn genetic diseases ⚠
- p.Ile140= Single submitter CHIME syndrome
- p.Ile158Thr Single submitter ⚠
- p.Ile192Leu Single submitter ⚠
- p.Leu180= Single submitter CHIME syndrome
- p.Leu199Ser Single submitter Inborn genetic diseases ⚠
- p.Leu211Pro Single submitter ⚠
- p.Leu231Phe Single submitter Inborn genetic diseases ⚠
- p.Leu236Phe Single submitter ⚠
- p.Leu64Ser Single submitter Inborn genetic diseases ⚠
- p.Leu6Pro Single submitter Inborn genetic diseases ⚠
- p.Leu73Pro Single submitter ⚠
- p.Leu7Pro Single submitter Inborn genetic diseases ⚠
- p.Leu99Trp Single submitter CHIME syndrome ⚠
- p.Lys89Arg Single submitter Inborn genetic diseases ⚠
- p.Phe57Leu Single submitter CHIME syndrome ⚠
- p.Pro102Ala Single submitter Inborn genetic diseases ⚠
- p.Pro50Leu Single submitter Inborn genetic diseases ⚠
- p.Trp232Arg Single submitter ⚠
- p.Tyr161Cys Single submitter Inborn genetic diseases ⚠
- p.Val137Met Single submitter ⚠
- p.Val179Leu Single submitter CHIME syndrome ⚠
- p.Val9Leu Single submitter ⚠