PLXNA3 — 796 ClinVar variants

All ClinVar germline PLXNA3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 399 flagged for review →

7 Conflicting · 29 Benign · 3 Benign/Likely benign · 322 Likely benign · 435 Uncertain significance

Full PLXNA3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 399

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors lean, ClinVar uncertain 309

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 309

Predictors split 85

The independent predictors disagree with each other — read with care.

All PLXNA3 variants

Conflicting classifications of pathogenicity 7

Benign 29

Benign/Likely benign 3

Likely benign 322

Showing the top 300 by review status; the full set is in the sitemap.

  • p.Phe46= Multiple submitters
  • c.1317+60TGG[3] Single submitter
  • c.1446+26G>C Single submitter
  • c.2043+8G>A Single submitter
  • c.2245-7C>T Single submitter
  • c.2937-5T>C Single submitter
  • c.3441+5G>A Single submitter
  • c.4987-4A>G Single submitter
  • p.Ala1701= Single submitter
  • p.Ala1826= Single submitter
  • p.Ala253= Single submitter
  • p.Ala498Thr Single submitter
  • p.Ala575Thr Single submitter
  • p.Ala579Val Single submitter
  • p.Ala580= Single submitter
  • p.Ala734= Single submitter
  • p.Arg1088Gln Single submitter
  • p.Arg1191= Single submitter
  • p.Arg285= Single submitter
  • p.Arg423His Single submitter
  • p.Arg473Gln Single submitter
  • p.Arg603Gln Single submitter
  • p.Arg841His Single submitter
  • p.Asn547Asp Single submitter
  • p.Asp1137= Single submitter
  • p.Asp149= Single submitter
  • p.Asp172= Single submitter
  • p.Asp315= Single submitter
  • p.Asp632= Single submitter
  • p.Glu1430= Single submitter
  • p.Gly1767= Single submitter
  • p.Gly281Ser Single submitter
  • p.Gly413Ser Single submitter
  • p.Gly48= Single submitter
  • p.Gly504= Single submitter
  • p.His66Tyr Single submitter
  • p.Leu1866= Single submitter
  • p.Leu687= Single submitter
  • p.Leu816= Single submitter
  • p.Leu991Val Single submitter
  • p.Phe1103= Single submitter
  • p.Phe532= Single submitter
  • p.Pro1153= Single submitter
  • p.Pro134= Single submitter
  • p.Thr1363= Single submitter
  • p.Thr924= Single submitter
  • p.Val1326Met Single submitter
  • p.Val171= Single submitter
  • p.Val316Ile Single submitter
  • p.Val428= Single submitter
  • p.Val626= Single submitter
  • p.Val849Met Single submitter
  • c.1135-4C>T No assertion criteria PLXNA3-related disorder
  • c.1447-4C>T No assertion criteria PLXNA3-related disorder
  • c.1447-8G>T No assertion criteria PLXNA3-related disorder
  • c.1547+9G>A No assertion criteria PLXNA3-related disorder
  • c.1548-6G>A No assertion criteria PLXNA3-related disorder
  • c.1548-6G>T No assertion criteria PLXNA3-related disorder
  • c.1548-7C>T No assertion criteria PLXNA3-related disorder
  • c.1828+9G>A No assertion criteria PLXNA3-related disorder
  • c.1929-3dup No assertion criteria PLXNA3-related disorder
  • c.1929-7C>T No assertion criteria PLXNA3-related disorder
  • c.2044-8C>T No assertion criteria PLXNA3-related disorder
  • c.2244+9C>T No assertion criteria PLXNA3-related disorder
  • c.2342-10G>C No assertion criteria PLXNA3-related disorder
  • c.2678+8C>T No assertion criteria PLXNA3-related disorder
  • c.2678+9G>A No assertion criteria PLXNA3-related disorder
  • c.2800-4G>A No assertion criteria PLXNA3-related disorder
  • c.2800-5C>T No assertion criteria PLXNA3-related disorder
  • c.2936+10G>A No assertion criteria PLXNA3-related disorder
  • c.2936+7C>T No assertion criteria PLXNA3-related disorder
  • c.2937-4G>A No assertion criteria PLXNA3-related disorder
  • c.3585+9G>C No assertion criteria PLXNA3-related disorder
  • c.3821-5C>G No assertion criteria PLXNA3-related disorder
  • c.3821-8C>T No assertion criteria PLXNA3-related disorder
  • c.3963+6C>T No assertion criteria PLXNA3-related disorder
  • c.3964-5del No assertion criteria PLXNA3-related disorder
  • c.3964-7C>T No assertion criteria PLXNA3-related disorder
  • c.4287+10G>A No assertion criteria PLXNA3-related disorder
  • c.4287+4C>T No assertion criteria PLXNA3-related disorder
  • c.4288-10C>T No assertion criteria PLXNA3-related disorder
  • c.4435-5C>G No assertion criteria PLXNA3-related disorder
  • c.4795+10C>T No assertion criteria PLXNA3-related disorder
  • c.4795+7G>T No assertion criteria PLXNA3-related disorder
  • c.4796-8T>C No assertion criteria PLXNA3-related disorder
  • c.5157-8G>A No assertion criteria PLXNA3-related disorder
  • c.5370-10G>T No assertion criteria PLXNA3-related disorder
  • c.5520+3G>A No assertion criteria PLXNA3-related disorder
  • c.5521-3C>T No assertion criteria PLXNA3-related disorder
  • c.5521-7C>T No assertion criteria PLXNA3-related disorder
  • c.-4G>A No assertion criteria PLXNA3-related disorder
  • c.-5C>T No assertion criteria PLXNA3-related disorder
  • c.-7G>A No assertion criteria PLXNA3-related disorder
  • p.Ala105= No assertion criteria PLXNA3-related disorder
  • p.Ala1093= No assertion criteria PLXNA3-related disorder
  • p.Ala1156= No assertion criteria PLXNA3-related disorder
  • p.Ala1225= No assertion criteria PLXNA3-related disorder
  • p.Ala1226= No assertion criteria PLXNA3-related disorder
  • p.Ala1237= No assertion criteria PLXNA3-related disorder
  • p.Ala13= No assertion criteria PLXNA3-related disorder
  • p.Ala1303= No assertion criteria PLXNA3-related disorder
  • p.Ala1341= No assertion criteria PLXNA3-related disorder
  • p.Ala145= No assertion criteria PLXNA3-related disorder
  • p.Ala1454= No assertion criteria PLXNA3-related disorder
  • p.Ala1563Thr No assertion criteria PLXNA3-related disorder
  • p.Ala1574= No assertion criteria PLXNA3-related disorder
  • p.Ala193= No assertion criteria PLXNA3-related disorder
  • p.Ala193Val No assertion criteria PLXNA3-related disorder
  • p.Ala221= No assertion criteria PLXNA3-related disorder
  • p.Ala253Val No assertion criteria PLXNA3-related disorder
  • p.Ala267= No assertion criteria PLXNA3-related disorder
  • p.Ala267Thr No assertion criteria PLXNA3-related disorder
  • p.Ala305= No assertion criteria PLXNA3-related disorder
  • p.Ala418= No assertion criteria PLXNA3-related disorder
  • p.Ala578= No assertion criteria PLXNA3-related disorder
  • p.Ala584= No assertion criteria PLXNA3-related disorder
  • p.Ala629= No assertion criteria PLXNA3-related disorder
  • p.Ala788= No assertion criteria PLXNA3-related disorder
  • p.Ala91Val No assertion criteria PLXNA3-related disorder
  • p.Ala920= No assertion criteria PLXNA3-related disorder
  • p.Arg1061= No assertion criteria PLXNA3-related disorder
  • p.Arg107Cys No assertion criteria PLXNA3-related disorder ⚠
  • p.Arg1092= No assertion criteria PLXNA3-related disorder
  • p.Arg1160His No assertion criteria PLXNA3-related disorder
  • p.Arg1305= No assertion criteria PLXNA3-related disorder
  • p.Arg1340= No assertion criteria PLXNA3-related disorder
  • p.Arg1359= No assertion criteria PLXNA3-related disorder
  • p.Arg1361= No assertion criteria PLXNA3-related disorder
  • p.Arg1375= No assertion criteria PLXNA3-related disorder
  • p.Arg1460= No assertion criteria PLXNA3-related disorder
  • p.Arg1815= No assertion criteria PLXNA3-related disorder
  • p.Arg184= No assertion criteria PLXNA3-related disorder
  • p.Arg290His No assertion criteria PLXNA3-related disorder
  • p.Arg333Gln No assertion criteria PLXNA3-related disorder
  • p.Arg352= No assertion criteria PLXNA3-related disorder
  • p.Arg64Trp No assertion criteria PLXNA3-related disorder
  • p.Arg724Gln No assertion criteria PLXNA3-related disorder
  • p.Arg89= No assertion criteria PLXNA3-related disorder
  • p.Arg952= No assertion criteria PLXNA3-related disorder
  • p.Asn1009= No assertion criteria PLXNA3-related disorder
  • p.Asn1325= No assertion criteria PLXNA3-related disorder
  • p.Asn1499= No assertion criteria PLXNA3-related disorder
  • p.Asn564= No assertion criteria PLXNA3-related disorder
  • p.Asn582= No assertion criteria PLXNA3-related disorder
  • p.Asn74= No assertion criteria PLXNA3-related disorder
  • p.Asn746= No assertion criteria PLXNA3-related disorder
  • p.Asn864= No assertion criteria PLXNA3-related disorder
  • p.Asn882= No assertion criteria PLXNA3-related disorder
  • p.Asp1006= No assertion criteria PLXNA3-related disorder
  • p.Asp1569= No assertion criteria PLXNA3-related disorder
  • p.Asp412Asn No assertion criteria PLXNA3-related disorder
  • p.Cys112= No assertion criteria PLXNA3-related disorder
  • p.Cys1183= No assertion criteria PLXNA3-related disorder
  • p.Cys266= No assertion criteria PLXNA3-related disorder
  • p.Cys497= No assertion criteria PLXNA3-related disorder
  • p.Cys500= No assertion criteria PLXNA3-related disorder
  • p.Gln1566= No assertion criteria PLXNA3-related disorder
  • p.Gln925= No assertion criteria PLXNA3-related disorder
  • p.Glu1699= No assertion criteria PLXNA3-related disorder
  • p.Glu1812= No assertion criteria PLXNA3-related disorder
  • p.Gly1045= No assertion criteria PLXNA3-related disorder
  • p.Gly1134= No assertion criteria PLXNA3-related disorder
  • p.Gly1227= No assertion criteria PLXNA3-related disorder
  • p.Gly1362= No assertion criteria PLXNA3-related disorder
  • p.Gly1450= No assertion criteria PLXNA3-related disorder
  • p.Gly15= No assertion criteria PLXNA3-related disorder
  • p.Gly153= No assertion criteria PLXNA3-related disorder
  • p.Gly16= No assertion criteria PLXNA3-related disorder
  • p.Gly1663= No assertion criteria PLXNA3-related disorder
  • p.Gly286= No assertion criteria PLXNA3-related disorder
  • p.Gly309= No assertion criteria PLXNA3-related disorder
  • p.Gly403= No assertion criteria PLXNA3-related disorder
  • p.Gly525= No assertion criteria PLXNA3-related disorder
  • p.Gly715= No assertion criteria PLXNA3-related disorder
  • p.Gly727= No assertion criteria PLXNA3-related disorder
  • p.Gly866= No assertion criteria PLXNA3-related disorder
  • p.Gly878= No assertion criteria PLXNA3-related disorder
  • p.His1107= No assertion criteria PLXNA3-related disorder
  • p.His1635= No assertion criteria PLXNA3-related disorder
  • p.His1817= No assertion criteria PLXNA3-related disorder
  • p.His530= No assertion criteria PLXNA3-related disorder
  • p.Ile1072= No assertion criteria PLXNA3-related disorder
  • p.Ile1391= No assertion criteria PLXNA3-related disorder
  • p.Ile1552= No assertion criteria PLXNA3-related disorder
  • p.Ile209= No assertion criteria PLXNA3-related disorder
  • p.Ile280= No assertion criteria PLXNA3-related disorder
  • p.Ile320Val No assertion criteria PLXNA3-related disorder
  • p.Ile401= No assertion criteria PLXNA3-related disorder
  • p.Ile860= No assertion criteria PLXNA3-related disorder
  • p.Ile894= No assertion criteria PLXNA3-related disorder
  • p.Leu100= No assertion criteria PLXNA3-related disorder
  • p.Leu1078= No assertion criteria PLXNA3-related disorder
  • p.Leu1231= No assertion criteria PLXNA3-related disorder
  • p.Leu1269= No assertion criteria PLXNA3-related disorder
  • p.Leu128= No assertion criteria PLXNA3-related disorder
  • p.Leu131= No assertion criteria PLXNA3-related disorder
  • p.Leu1395= No assertion criteria PLXNA3-related disorder
  • p.Leu1511= No assertion criteria PLXNA3-related disorder
  • p.Leu1559= No assertion criteria PLXNA3-related disorder
  • p.Leu1575= No assertion criteria PLXNA3-related disorder
  • p.Leu1601= No assertion criteria PLXNA3-related disorder
  • p.Leu1631= No assertion criteria PLXNA3-related disorder
  • p.Leu1672= No assertion criteria PLXNA3-related disorder
  • p.Leu198= No assertion criteria PLXNA3-related disorder
  • p.Leu243= No assertion criteria PLXNA3-related disorder
  • p.Leu297= No assertion criteria PLXNA3-related disorder
  • p.Leu368= No assertion criteria PLXNA3-related disorder
  • p.Leu389= No assertion criteria PLXNA3-related disorder
  • p.Leu6= No assertion criteria PLXNA3-related disorder
  • p.Leu783= No assertion criteria PLXNA3-related disorder
  • p.Leu848= No assertion criteria PLXNA3-related disorder
  • p.Leu874= No assertion criteria PLXNA3-related disorder
  • p.Leu90= No assertion criteria PLXNA3-related disorder
  • p.Lys1496= No assertion criteria PLXNA3-related disorder
  • p.Lys1662= No assertion criteria PLXNA3-related disorder
  • p.Lys1730= No assertion criteria PLXNA3-related disorder
  • p.Lys1779= No assertion criteria PLXNA3-related disorder
  • p.Lys1855= No assertion criteria PLXNA3-related disorder
  • p.Lys438Asn No assertion criteria PLXNA3-related disorder ⚠
  • p.Lys481= No assertion criteria PLXNA3-related disorder
  • p.Phe1333= No assertion criteria PLXNA3-related disorder
  • p.Phe1734= No assertion criteria PLXNA3-related disorder
  • p.Phe1736= No assertion criteria PLXNA3-related disorder
  • p.Phe230= No assertion criteria PLXNA3-related disorder
  • p.Phe235= No assertion criteria PLXNA3-related disorder
  • p.Phe238= No assertion criteria PLXNA3-related disorder
  • p.Phe26= No assertion criteria PLXNA3-related disorder
  • p.Phe321= No assertion criteria PLXNA3-related disorder
  • p.Phe340= No assertion criteria PLXNA3-related disorder
  • p.Phe576= No assertion criteria PLXNA3-related disorder
  • p.Pro1000Leu No assertion criteria PLXNA3-related disorder
  • p.Pro1082= No assertion criteria PLXNA3-related disorder
  • p.Pro1140= No assertion criteria PLXNA3-related disorder
  • p.Pro1309= No assertion criteria PLXNA3-related disorder
  • p.Pro148= No assertion criteria PLXNA3-related disorder
  • p.Pro1519= No assertion criteria PLXNA3-related disorder
  • p.Pro1687= No assertion criteria PLXNA3-related disorder
  • p.Pro366= No assertion criteria PLXNA3-related disorder
  • p.Pro405= No assertion criteria PLXNA3-related disorder
  • p.Pro487= No assertion criteria PLXNA3-related disorder
  • p.Pro506= No assertion criteria PLXNA3-related disorder
  • p.Pro554= No assertion criteria PLXNA3-related disorder
  • p.Pro597= No assertion criteria PLXNA3-related disorder
  • p.Pro695= No assertion criteria PLXNA3-related disorder
  • p.Pro70= No assertion criteria PLXNA3-related disorder
  • p.Pro777= No assertion criteria PLXNA3-related disorder
  • p.Pro79= No assertion criteria PLXNA3-related disorder
  • p.Pro907= No assertion criteria PLXNA3-related disorder
  • p.Pro907Leu No assertion criteria PLXNA3-related disorder
  • p.Pro908= No assertion criteria PLXNA3-related disorder
  • p.Pro910= No assertion criteria PLXNA3-related disorder
  • p.Pro92= No assertion criteria PLXNA3-related disorder
  • p.Ser1177= No assertion criteria PLXNA3-related disorder
  • p.Ser1211= No assertion criteria PLXNA3-related disorder
  • p.Ser1490= No assertion criteria PLXNA3-related disorder
  • p.Ser1651= No assertion criteria PLXNA3-related disorder
  • p.Ser1707= No assertion criteria PLXNA3-related disorder
  • p.Ser1802= No assertion criteria PLXNA3-related disorder
  • p.Ser1819= No assertion criteria PLXNA3-related disorder
  • p.Ser183= No assertion criteria PLXNA3-related disorder
  • p.Ser1869= No assertion criteria PLXNA3-related disorder
  • p.Ser192= No assertion criteria PLXNA3-related disorder
  • p.Ser217= No assertion criteria PLXNA3-related disorder
  • p.Ser232= No assertion criteria PLXNA3-related disorder
  • p.Ser234= No assertion criteria PLXNA3-related disorder
  • p.Ser260= No assertion criteria PLXNA3-related disorder
  • p.Ser283= No assertion criteria PLXNA3-related disorder
  • p.Ser343= No assertion criteria PLXNA3-related disorder
  • p.Ser355= No assertion criteria PLXNA3-related disorder
  • p.Ser416= No assertion criteria PLXNA3-related disorder
  • p.Ser434= No assertion criteria PLXNA3-related disorder
  • p.Ser503= No assertion criteria PLXNA3-related disorder
  • p.Ser589= No assertion criteria PLXNA3-related disorder
  • p.Ser714= No assertion criteria PLXNA3-related disorder
  • p.Ser739= No assertion criteria PLXNA3-related disorder
  • p.Ser764= No assertion criteria PLXNA3-related disorder
  • p.Ser926= No assertion criteria PLXNA3-related disorder
  • p.Ter1872= No assertion criteria PLXNA3-related disorder
  • p.Thr1024= No assertion criteria PLXNA3-related disorder
  • p.Thr1164= No assertion criteria PLXNA3-related disorder
  • p.Thr1280= No assertion criteria PLXNA3-related disorder
  • p.Thr1322= No assertion criteria PLXNA3-related disorder
  • p.Thr1349= No assertion criteria PLXNA3-related disorder
  • p.Thr1456= No assertion criteria PLXNA3-related disorder
  • p.Thr1549= No assertion criteria PLXNA3-related disorder
  • p.Thr1604= No assertion criteria PLXNA3-related disorder
  • p.Thr1619= No assertion criteria PLXNA3-related disorder
  • p.Thr1744= No assertion criteria PLXNA3-related disorder
  • p.Thr180= No assertion criteria PLXNA3-related disorder
  • p.Thr215= No assertion criteria PLXNA3-related disorder
  • p.Thr240= No assertion criteria PLXNA3-related disorder
  • p.Thr245= No assertion criteria PLXNA3-related disorder
  • p.Thr378= No assertion criteria PLXNA3-related disorder
  • p.Thr552= No assertion criteria PLXNA3-related disorder
  • p.Thr559= No assertion criteria PLXNA3-related disorder
  • p.Thr662= No assertion criteria PLXNA3-related disorder
  • p.Thr856= No assertion criteria PLXNA3-related disorder
  • p.Thr936= No assertion criteria PLXNA3-related disorder
  • p.Tyr104= No assertion criteria PLXNA3-related disorder
  • p.Tyr1302= No assertion criteria PLXNA3-related disorder

Uncertain significance 435

Showing the top 300 by review status; the full set is in the sitemap.