PMPCB — 173 ClinVar variants
All ClinVar germline PMPCB variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 79 flagged for review →
3 Pathogenic · 8 Likely pathogenic · 4 Conflicting · 15 Benign · 2 Benign/Likely benign · 51 Likely benign · 90 Uncertain significance
Full PMPCB gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 79
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 4
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
PMPCB p.Ala201Pro
Conflicting
Single submitter
multiple mitochondrial dysfunctions syndrome 6
-
PMPCB p.Arg41Lys
Conflicting
Single submitter
multiple mitochondrial dysfunctions syndrome 6
-
PMPCB p.Arg488Cys
Conflicting
Single submitter
multiple mitochondrial dysfunctions syndrome 6
-
PMPCB p.Asn446Asp
Conflicting
Single submitter
multiple mitochondrial dysfunctions syndrome 6
Predictors lean, ClinVar uncertain 66
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
PMPCB p.Asn97Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PMPCB p.Gln46Lys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PMPCB p.Ile160Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PMPCB p.Leu119Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PMPCB p.Leu157Arg
Uncertain significance
Multiple submitters
multiple mitochondrial dysfunctions syndrome 6
-
PMPCB p.Thr416Ala
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PMPCB p.Trp363Arg
Uncertain significance
Multiple submitters
multiple mitochondrial dysfunctions syndrome 6
-
PMPCB p.Ala169Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Ala206Gly
Uncertain significance
Single submitter
Inborn genetic diseases
- PMPCB p.Ala294Val Uncertain significance Single submitter
-
PMPCB p.Ala316Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Arg173His
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Arg285Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Arg287Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Arg399Gly
Uncertain significance
Single submitter
multiple mitochondrial dysfunctions syndrome 6
- PMPCB p.Arg481Cys Uncertain significance Single submitter
- PMPCB p.Arg488His Uncertain significance Single submitter
-
PMPCB p.Asn131Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Asn322Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Asn332Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Asn345Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Asn93Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Asp228Asn
Uncertain significance
Single submitter
Inborn genetic diseases
- PMPCB p.Cys419Ser Uncertain significance Single submitter
-
PMPCB p.Gln473Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Gln50His
Uncertain significance
Single submitter
multiple mitochondrial dysfunctions syndrome 6
-
PMPCB p.Glu155Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- PMPCB p.Glu394Asp Uncertain significance Single submitter
-
PMPCB p.Glu452Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Glu452Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Gly261Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Gly328Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Gly329Glu
Uncertain significance
Single submitter
multiple mitochondrial dysfunctions syndrome 6
-
PMPCB p.Gly469Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- PMPCB p.Gly66Arg Uncertain significance Single submitter
- PMPCB p.His198Tyr Uncertain significance Single submitter
-
PMPCB p.His233Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.His343Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Ile161Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Ile230Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Ile298Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Ile442Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Ile480Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Leu274Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Leu293Phe
Uncertain significance
Single submitter
Inborn genetic diseases
- PMPCB p.Leu296Phe Uncertain significance Single submitter
-
PMPCB p.Lys257Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Lys278Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- PMPCB p.Lys336Arg Uncertain significance Single submitter
- PMPCB p.Met106Thr Uncertain significance Single submitter
- PMPCB p.Met291Val Uncertain significance Single submitter
-
PMPCB p.Phe258Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Phe327Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Pro276Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Pro308Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Pro56Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Ser391Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Ser44Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Ser462Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Ser71Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- PMPCB p.Ser74Cys Uncertain significance Single submitter
-
PMPCB p.Ser77Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Thr139Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Tyr196Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Tyr234Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Arg441Gly
Uncertain significance
No assertion criteria
PMPCB-related disorder
Predictors split 9
The independent predictors disagree with each other — read with care.
-
PMPCB p.Arg209Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PMPCB p.Arg325Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PMPCB p.Cys312Tyr
Benign/Likely benign
Multiple submitters
multiple mitochondrial dysfunctions syndrome 6
-
PMPCB p.Ile221Val
Uncertain significance
Multiple submitters
multiple mitochondrial dysfunctions syndrome 6
-
PMPCB p.Arg209Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Asn446His
Uncertain significance
Single submitter
Inborn genetic diseases
-
PMPCB p.Glu168Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- PMPCB p.Met126Ile Uncertain significance Single submitter
-
PMPCB p.Met484Ile
Uncertain significance
Single submitter
Inborn genetic diseases
All PMPCB variants
Pathogenic 3
- p.Arg175His Single submitter multiple mitochondrial dysfunctions syndrome 6
- p.Ile422Thr No assertion criteria multiple mitochondrial dysfunctions syndrome 6
- p.Val177Gly No assertion criteria multiple mitochondrial dysfunctions syndrome 6
Likely pathogenic 8
- p.Arg175Cys Multiple submitters PMPCB-related mitochondrial disorder
- c.1154+5G>C Single submitter PMPCB-related ataxia
- c.736+1G>T Single submitter multiple mitochondrial dysfunctions syndrome 6
- p.Arg481fs Single submitter multiple mitochondrial dysfunctions syndrome 6
- p.Glu181fs Single submitter multiple mitochondrial dysfunctions syndrome 6
- p.Met408fs Single submitter
- p.Thr360fs Single submitter multiple mitochondrial dysfunctions syndrome 6
- p.Tyr202Ter Single submitter multiple mitochondrial dysfunctions syndrome 6
Conflicting classifications of pathogenicity 4
- p.Ala201Pro Single submitter multiple mitochondrial dysfunctions syndrome 6 ⚠
- p.Arg41Lys Single submitter multiple mitochondrial dysfunctions syndrome 6 ⚠
- p.Arg488Cys Single submitter multiple mitochondrial dysfunctions syndrome 6 ⚠
- p.Asn446Asp Single submitter multiple mitochondrial dysfunctions syndrome 6 ⚠
Benign 15
- c.1155-171T>C Multiple submitters
- c.241-3A>G Multiple submitters
- c.328-43T>C Multiple submitters
- c.737-3T>C Multiple submitters multiple mitochondrial dysfunctions syndrome 6
- c.994-45G>A Multiple submitters
- p.Glu396Asp Multiple submitters
- p.Leu35Ser Multiple submitters
- c.1154+11T>C Single submitter
- c.1154+220del Single submitter
- c.1329+4A>G Single submitter
- c.1406-3T>C Single submitter
- c.328-10_328-9del Single submitter
- p.Ala256= Single submitter
- p.Ala375Thr Single submitter
- p.Gly176= Single submitter
Benign/Likely benign 2
- c.100-8C>T Multiple submitters
- p.Cys312Tyr Multiple submitters multiple mitochondrial dysfunctions syndrome 6 ⚠
Likely benign 51
- c.241-6A>G Multiple submitters
- p.Thr280Ser Multiple submitters Inborn genetic diseases
- c.1155-9G>A Single submitter
- c.1240+11A>C Single submitter
- c.1240+15_1240+20dup Single submitter
- c.1240+19G>A Single submitter
- c.1241-15C>T Single submitter
- c.1241-4dup Single submitter
- c.1241-7T>C Single submitter
- c.1329+18A>G Single submitter
- c.1330-20_1330-19del Single submitter
- c.1405+13T>G Single submitter
- c.1405+22C>T Single submitter
- c.240+14G>A Single submitter
- c.240+16A>G Single submitter
- c.240+18C>G Single submitter
- c.241-7C>G Single submitter
- c.458-18T>A Single submitter
- c.656+20T>C Single submitter
- c.657-14del Single submitter
- c.657-26_657-14del Single submitter
- c.736+20T>C Single submitter
- c.849+15C>G Single submitter
- c.993+19A>G Single submitter
- c.994-7C>A Single submitter
- p.Ala132= Single submitter
- p.Ala294= Single submitter
- p.Ala444= Single submitter
- p.Asn188= Single submitter
- p.Asp228= Single submitter
- p.Gln382= Single submitter
- p.Glu370= Single submitter
- p.His101= Single submitter
- p.Ile284= Single submitter
- p.Ile298Val Single submitter Inborn genetic diseases
- p.Ile311Val Single submitter
- p.Ile450Val Single submitter Inborn genetic diseases
- p.Leu252= Single submitter
- p.Leu337= Single submitter
- p.Leu35= Single submitter
- p.Leu53= Single submitter
- p.Leu67= Single submitter
- p.Pro417= Single submitter
- p.Ser164= Single submitter
- p.Thr318= Single submitter
- p.Thr80= Single submitter
- p.Tyr142= Single submitter
- p.Tyr91= Single submitter
- p.Val55= Single submitter
- c.994-9dup No assertion criteria PMPCB-related disorder
- p.Val60= No assertion criteria PMPCB-related disorder
Uncertain significance 90
- p.Arg209Gln Multiple submitters Inborn genetic diseases ⚠
- p.Arg325Cys Multiple submitters Inborn genetic diseases ⚠
- p.Arg451Ter Multiple submitters
- p.Asn97Ser Multiple submitters Inborn genetic diseases ⚠
- p.Gln46Lys Multiple submitters Inborn genetic diseases ⚠
- p.Ile160Thr Multiple submitters Inborn genetic diseases ⚠
- p.Ile221Val Multiple submitters multiple mitochondrial dysfunctions syndrome 6 ⚠
- p.Leu119Met Multiple submitters Inborn genetic diseases ⚠
- p.Leu157Arg Multiple submitters multiple mitochondrial dysfunctions syndrome 6 ⚠
- p.Leu378Gln Multiple submitters multiple mitochondrial dysfunctions syndrome 6
- p.Thr416Ala Multiple submitters Inborn genetic diseases ⚠
- p.Trp363Arg Multiple submitters multiple mitochondrial dysfunctions syndrome 6 ⚠
- c.458-5A>G Single submitter
- c.736+1G>A Single submitter
- c.736+6T>G Single submitter multiple mitochondrial dysfunctions syndrome 6
- c.737-6A>G Single submitter
- c.849+1G>A Single submitter
- c.993+1G>A Single submitter
- p.Ala169Val Single submitter Inborn genetic diseases ⚠
- p.Ala206Gly Single submitter Inborn genetic diseases ⚠
- p.Ala294Val Single submitter ⚠
- p.Ala316Val Single submitter Inborn genetic diseases ⚠
- p.Ala467Thr Single submitter
- p.Arg173His Single submitter Inborn genetic diseases ⚠
- p.Arg209Trp Single submitter Inborn genetic diseases ⚠
- p.Arg285Cys Single submitter Inborn genetic diseases ⚠
- p.Arg287Thr Single submitter Inborn genetic diseases ⚠
- p.Arg399Gly Single submitter multiple mitochondrial dysfunctions syndrome 6 ⚠
- p.Arg481Cys Single submitter ⚠
- p.Arg488His Single submitter ⚠
- p.Asn131Ser Single submitter Inborn genetic diseases ⚠
- p.Asn322Ser Single submitter Inborn genetic diseases ⚠
- p.Asn332Ser Single submitter Inborn genetic diseases ⚠
- p.Asn345Ser Single submitter Inborn genetic diseases ⚠
- p.Asn446His Single submitter Inborn genetic diseases ⚠
- p.Asn93Ser Single submitter Inborn genetic diseases ⚠
- p.Asp228Asn Single submitter Inborn genetic diseases ⚠
- p.Asp413= Single submitter
- p.Cys389fs Single submitter multiple mitochondrial dysfunctions syndrome 6
- p.Cys419Ser Single submitter ⚠
- p.Gln473Glu Single submitter Inborn genetic diseases ⚠
- p.Gln50His Single submitter multiple mitochondrial dysfunctions syndrome 6 ⚠
- p.Glu155Lys Single submitter Inborn genetic diseases ⚠
- p.Glu168Lys Single submitter Inborn genetic diseases ⚠
- p.Glu394Asp Single submitter ⚠
- p.Glu452Asp Single submitter Inborn genetic diseases ⚠
- p.Glu452Lys Single submitter Inborn genetic diseases ⚠
- p.Gly261Ser Single submitter Inborn genetic diseases ⚠
- p.Gly328Arg Single submitter Inborn genetic diseases ⚠
- p.Gly329Glu Single submitter multiple mitochondrial dysfunctions syndrome 6 ⚠
- p.Gly469Asp Single submitter Inborn genetic diseases ⚠
- p.Gly66Arg Single submitter ⚠
- p.His198Tyr Single submitter ⚠
- p.His233Arg Single submitter Inborn genetic diseases ⚠
- p.His343Gln Single submitter Inborn genetic diseases ⚠
- p.Ile161Thr Single submitter Inborn genetic diseases ⚠
- p.Ile230Val Single submitter Inborn genetic diseases ⚠
- p.Ile239Thr Single submitter
- p.Ile298Met Single submitter Inborn genetic diseases ⚠
- p.Ile442Thr Single submitter Inborn genetic diseases ⚠
- p.Ile480Leu Single submitter Inborn genetic diseases ⚠
- p.Leu274Val Single submitter Inborn genetic diseases ⚠
- p.Leu293Phe Single submitter Inborn genetic diseases ⚠
- p.Leu296Phe Single submitter ⚠
- p.Leu404= Single submitter
- p.Lys257Glu Single submitter Inborn genetic diseases ⚠
- p.Lys278Gln Single submitter Inborn genetic diseases ⚠
- p.Lys336Arg Single submitter ⚠
- p.Met106Thr Single submitter ⚠
- p.Met126Ile Single submitter ⚠
- p.Met291Val Single submitter ⚠
- p.Met484fs Single submitter
- p.Met484Ile Single submitter Inborn genetic diseases ⚠
- p.Phe258Leu Single submitter Inborn genetic diseases ⚠
- p.Phe327Ser Single submitter Inborn genetic diseases ⚠
- p.Pro276Ala Single submitter Inborn genetic diseases ⚠
- p.Pro308Ala Single submitter Inborn genetic diseases ⚠
- p.Pro434Ser Single submitter Inborn genetic diseases
- p.Pro56Arg Single submitter Inborn genetic diseases ⚠
- p.Ser391Thr Single submitter Inborn genetic diseases ⚠
- p.Ser44Asn Single submitter Inborn genetic diseases ⚠
- p.Ser462Ile Single submitter Inborn genetic diseases ⚠
- p.Ser71Leu Single submitter Inborn genetic diseases ⚠
- p.Ser74Cys Single submitter ⚠
- p.Ser77Pro Single submitter Inborn genetic diseases ⚠
- p.Thr139Asn Single submitter Inborn genetic diseases ⚠
- p.Thr187delinsLysLysTyrValSerGluSerAsnPheProProGlyAsnLeuSerGluThrValValSerSer Single submitter
- p.Tyr196Ser Single submitter Inborn genetic diseases ⚠
- p.Tyr234Asp Single submitter Inborn genetic diseases ⚠
- p.Arg441Gly No assertion criteria PMPCB-related disorder ⚠