POMP — 149 ClinVar variants
All ClinVar germline POMP variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 56 flagged for review →
3 Pathogenic · 1 Likely pathogenic · 2 Conflicting · 8 Benign · 3 Benign/Likely benign · 58 Likely benign · 74 Uncertain significance
Full POMP gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 56
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors lean, ClinVar uncertain 48
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- POMP p.Arg32Gln Uncertain significance Multiple submitters
-
POMP p.Asn108His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
POMP p.Asn40Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
POMP p.Gln56His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
POMP p.His28Pro
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
POMP p.Ile112Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
POMP p.Leu30Phe
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
POMP p.Leu31Phe
Uncertain significance
Multiple submitters
keratosis linearis-ichthyosis congenita-sclerosing keratoderma syndrome
-
POMP p.Leu6Pro
Uncertain significance
Multiple submitters
Inborn genetic diseases
- POMP p.Pro76Leu Uncertain significance Multiple submitters
-
POMP p.Pro76Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
- POMP p.Ser36Ala Uncertain significance Multiple submitters
-
POMP p.Ser65Phe
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
POMP p.Val38Ala
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
POMP p.Val38Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
- POMP p.Ala21Ser Uncertain significance Single submitter
- POMP p.Asn58Ser Uncertain significance Single submitter
- POMP p.Asn63Tyr Uncertain significance Single submitter
- POMP p.Cys37Phe Uncertain significance Single submitter
- POMP p.Gln123Arg Uncertain significance Single submitter
-
POMP p.Gln71Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- POMP p.Gln87Glu Uncertain significance Single submitter
- POMP p.Gln88Arg Uncertain significance Single submitter
-
POMP p.Glu18Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- POMP p.Glu49Gln Uncertain significance Single submitter
- POMP p.Glu49Gly Uncertain significance Single submitter
- POMP p.Glu52Gly Uncertain significance Single submitter
- POMP p.Gly107Asp Uncertain significance Single submitter
- POMP p.Gly23Arg Uncertain significance Single submitter
- POMP p.His131Tyr Uncertain significance Single submitter
-
POMP p.His46Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
- POMP p.Ile112Leu Uncertain significance Single submitter
- POMP p.Ile14Met Uncertain significance Single submitter
- POMP p.Leu100Val Uncertain significance Single submitter
- POMP p.Leu57Pro Uncertain significance Single submitter
- POMP p.Leu67Pro Uncertain significance Single submitter
- POMP p.Leu67Val Uncertain significance Single submitter
- POMP p.Lys39Arg Uncertain significance Single submitter
- POMP p.Met133Val Uncertain significance Single submitter
- POMP p.Pro121Ala Uncertain significance Single submitter
- POMP p.Pro15Ser Uncertain significance Single submitter
- POMP p.Pro76Thr Uncertain significance Single submitter
- POMP p.Ser13Asn Uncertain significance Single submitter
- POMP p.Ser20Pro Uncertain significance Single submitter
- POMP p.Ser65Cys Uncertain significance Single submitter
-
POMP p.Ser8Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- POMP p.Thr17Ile Uncertain significance Single submitter
- POMP p.Val104Ile Uncertain significance Single submitter
Predictors split 8
The independent predictors disagree with each other — read with care.
- POMP p.Arg32Trp Uncertain significance Multiple submitters
- POMP p.Arg91His Uncertain significance Single submitter
- POMP p.Glu110Gly Uncertain significance Single submitter
- POMP p.Glu125Lys Uncertain significance Single submitter
-
POMP p.Gly34Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- POMP p.Pro44Leu Uncertain significance Single submitter
-
POMP p.Ser97Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- POMP p.Val104Ala Uncertain significance Single submitter
All POMP variants
Pathogenic 3
- p.Ile112fs Multiple submitters proteasome-associated autoinflammatory syndrome 2
- p.Glu115fs No assertion criteria proteasome-associated autoinflammatory syndrome 2
- p.Phe114fs No assertion criteria proteasome-associated autoinflammatory syndrome 2
Likely pathogenic 1
- p.Asp109fs Single submitter
Conflicting classifications of pathogenicity 2
- c.265-1G>C Single submitter proteasome-associated autoinflammatory syndrome 2
- c.358+4A>G Single submitter
Benign 8
- c.102-70T>C Multiple submitters
- c.3+19G>C Multiple submitters
- c.4-58C>T Multiple submitters
- c.*8C>G Multiple submitters
- c.265-270A>G Single submitter
- c.4-14del Single submitter
- c.4-201A>T Single submitter
- p.Glu82= Single submitter
Benign/Likely benign 3
- c.101+9G>A Multiple submitters proteasome-associated autoinflammatory syndrome 2
- c.163-11G>A Multiple submitters
- c.359-12G>C Multiple submitters
Likely benign 58
- c.264+7T>C Multiple submitters
- c.3+12C>T Multiple submitters
- p.Asn108= Multiple submitters
- p.Pro76= Multiple submitters Inborn genetic diseases
- p.Ser124= Multiple submitters Inborn genetic diseases
- c.101+12A>T Single submitter
- c.101+17T>C Single submitter
- c.101+19A>G Single submitter
- c.101+20C>T Single submitter
- c.102-10_102-9del Single submitter
- c.102-14T>A Single submitter
- c.162+11T>C Single submitter
- c.162+17G>A Single submitter
- c.162+7A>G Single submitter
- c.162+7A>T Single submitter
- c.162+9A>G Single submitter
- c.163-12T>C Single submitter
- c.163-16A>G Single submitter
- c.163-16del Single submitter
- c.163-17T>C Single submitter
- c.163-19A>G Single submitter
- c.163-5T>G Single submitter
- c.264+15C>G Single submitter
- c.264+6T>C Single submitter
- c.265-14A>T Single submitter
- c.265-16A>G Single submitter
- c.265-19T>G Single submitter
- c.265-4A>G Single submitter
- c.265-8C>A Single submitter
- c.3+11A>G Single submitter
- c.3+13C>T Single submitter
- c.3+14C>G Single submitter
- c.3+14C>T Single submitter
- c.3+7G>A Single submitter
- c.3+9G>A Single submitter
- c.358+19C>A Single submitter
- c.358+8T>C Single submitter
- c.359-8_359-5del Single submitter
- c.4-11T>C Single submitter
- c.4-18T>C Single submitter
- c.4-20G>A Single submitter
- c.4-7G>A Single submitter
- c.*5del Single submitter
- p.Arg106= Single submitter
- p.Asp103= Single submitter
- p.Gln56= Single submitter
- p.Gln59= Single submitter
- p.Glu135= Single submitter
- p.Glu9= Single submitter
- p.Leu132= Single submitter
- p.Leu141= Single submitter
- p.Leu50= Single submitter
- p.Leu57= Single submitter
- p.Leu73= Single submitter
- p.Lys61= Single submitter
- p.Pro15= Single submitter
- p.Pro93= Single submitter
- p.Ter142= Single submitter
Uncertain significance 74
- p.Arg32Gln Multiple submitters ⚠
- p.Arg32Trp Multiple submitters ⚠
- p.Asn108His Multiple submitters Inborn genetic diseases ⚠
- p.Asn40Ser Multiple submitters Inborn genetic diseases ⚠
- p.Gln56His Multiple submitters Inborn genetic diseases ⚠
- p.His28Pro Multiple submitters Inborn genetic diseases ⚠
- p.Ile112Val Multiple submitters Inborn genetic diseases ⚠
- p.Leu30Phe Multiple submitters Inborn genetic diseases ⚠
- p.Leu31Phe Multiple submitters keratosis linearis-ichthyosis congenita-sclerosing keratoderma syndrome ⚠
- p.Leu6Pro Multiple submitters Inborn genetic diseases ⚠
- p.Pro76Leu Multiple submitters ⚠
- p.Pro76Ser Multiple submitters Inborn genetic diseases ⚠
- p.Ser36Ala Multiple submitters ⚠
- p.Ser65Phe Multiple submitters Inborn genetic diseases ⚠
- p.Val38Ala Multiple submitters Inborn genetic diseases ⚠
- p.Val38Leu Multiple submitters Inborn genetic diseases ⚠
- c.101+2T>C Single submitter
- c.162+1G>T Single submitter
- c.163-5del Single submitter
- c.3+3G>C Single submitter
- c.3+4A>G Single submitter
- c.358+24_358+25insTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNCCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCATTCAGCACCTTTTT Single submitter
- c.358+5G>A Single submitter
- c.359-1434C>G Single submitter
- c.-13A>C Single submitter
- c.-93G>C Single submitter
- p.Ala21Ser Single submitter ⚠
- p.Ala85Val Single submitter
- p.Arg91Cys Single submitter Inborn genetic diseases
- p.Arg91His Single submitter ⚠
- p.Asn119= Single submitter
- p.Asn58Ser Single submitter ⚠
- p.Asn63Tyr Single submitter ⚠
- p.Cys37Phe Single submitter ⚠
- p.Gln123Arg Single submitter ⚠
- p.Gln71Arg Single submitter Inborn genetic diseases ⚠
- p.Gln87Glu Single submitter ⚠
- p.Gln88Arg Single submitter ⚠
- p.Glu110Gly Single submitter ⚠
- p.Glu125Lys Single submitter ⚠
- p.Glu18Ala Single submitter Inborn genetic diseases ⚠
- p.Glu49Gln Single submitter ⚠
- p.Glu49Gly Single submitter ⚠
- p.Glu52Gly Single submitter ⚠
- p.Glu9_Lys11del Single submitter
- p.Gly107Asp Single submitter ⚠
- p.Gly23Arg Single submitter ⚠
- p.Gly34Ser Single submitter Inborn genetic diseases ⚠
- p.His131Tyr Single submitter ⚠
- p.His46Tyr Single submitter Inborn genetic diseases ⚠
- p.Ile112Leu Single submitter ⚠
- p.Ile112Thr Single submitter Inborn genetic diseases
- p.Ile14Met Single submitter ⚠
- p.Leu100Val Single submitter ⚠
- p.Leu31del Single submitter
- p.Leu57Pro Single submitter ⚠
- p.Leu67Pro Single submitter ⚠
- p.Leu67Val Single submitter ⚠
- p.Leu92Phe Single submitter
- p.Lys39Arg Single submitter ⚠
- p.Met133Val Single submitter ⚠
- p.Pro121Ala Single submitter ⚠
- p.Pro15fs Single submitter
- p.Pro15Ser Single submitter ⚠
- p.Pro44Leu Single submitter ⚠
- p.Pro76Thr Single submitter ⚠
- p.Ser13Asn Single submitter ⚠
- p.Ser20Pro Single submitter ⚠
- p.Ser65Cys Single submitter ⚠
- p.Ser8Cys Single submitter Inborn genetic diseases ⚠
- p.Ser97Cys Single submitter Inborn genetic diseases ⚠
- p.Thr17Ile Single submitter ⚠
- p.Val104Ala Single submitter ⚠
- p.Val104Ile Single submitter ⚠