POU6F2 — 159 ClinVar variants
All ClinVar germline POU6F2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 104 flagged for review →
2 Pathogenic · 4 Conflicting · 10 Benign · 1 Benign/Likely benign · 29 Likely benign · 113 Uncertain significance
Full POU6F2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 104
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 1
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
-
POU6F2 p.Gln220His
Pathogenic
No assertion criteria
Wilms tumor 5
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
POU6F2 p.Asn658His
Conflicting
Single submitter
hypogonadotropic hypogonadism
Predictors lean, ClinVar uncertain 79
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- POU6F2 p.Ala132Ser Uncertain significance Single submitter
- POU6F2 p.Ala145Val Uncertain significance Single submitter
- POU6F2 p.Ala237Asp Uncertain significance Single submitter
- POU6F2 p.Ala240Val Uncertain significance Single submitter
- POU6F2 p.Ala260Thr Uncertain significance Single submitter
- POU6F2 p.Ala336Val Uncertain significance Single submitter
- POU6F2 p.Ala408Thr Uncertain significance Single submitter
- POU6F2 p.Ala462Thr Uncertain significance Single submitter
- POU6F2 p.Ala476Gly Uncertain significance Single submitter
- POU6F2 p.Ala476Pro Uncertain significance Single submitter
- POU6F2 p.Ala545Val Uncertain significance Single submitter
- POU6F2 p.Ala573Thr Uncertain significance Single submitter
- POU6F2 p.Ala704Val Uncertain significance Single submitter
- POU6F2 p.Arg474Gln Uncertain significance Single submitter
-
POU6F2 p.Arg523Trp
Uncertain significance
Single submitter
hypogonadotropic hypogonadism
- POU6F2 p.Arg609Gln Uncertain significance Single submitter
- POU6F2 p.Arg619Gln Uncertain significance Single submitter
- POU6F2 p.Arg677Gln Uncertain significance Single submitter
- POU6F2 p.Arg95Gly Uncertain significance Single submitter
-
POU6F2 p.Asn147Ser
Uncertain significance
Single submitter
hypogonadotropic hypogonadism
- POU6F2 p.Asn177His Uncertain significance Single submitter
- POU6F2 p.Asp62Gly Uncertain significance Single submitter
- POU6F2 p.Gln130Glu Uncertain significance Single submitter
- POU6F2 p.Gln440Leu Uncertain significance Single submitter
- POU6F2 p.Glu542Lys Uncertain significance Single submitter
- POU6F2 p.Glu702Lys Uncertain significance Single submitter
- POU6F2 p.Gly137Ala Uncertain significance Single submitter
- POU6F2 p.Gly137Ser Uncertain significance Single submitter
- POU6F2 p.Gly492Ser Uncertain significance Single submitter
- POU6F2 p.Gly528Asp Uncertain significance Single submitter
- POU6F2 p.Gly543Val Uncertain significance Single submitter
-
POU6F2 p.Gly630Arg
Uncertain significance
Single submitter
hypogonadotropic hypogonadism
- POU6F2 p.His109Asn Uncertain significance Single submitter
- POU6F2 p.His463Tyr Uncertain significance Single submitter
- POU6F2 p.Ile344Thr Uncertain significance Single submitter
- POU6F2 p.Ile373Asn Uncertain significance Single submitter
- POU6F2 p.Ile435Val Uncertain significance Single submitter
- POU6F2 p.Ile572Val Uncertain significance Single submitter
- POU6F2 p.Ile603Met Uncertain significance Single submitter
- POU6F2 p.Leu126Val Uncertain significance Single submitter
- POU6F2 p.Leu215Phe Uncertain significance Single submitter
- POU6F2 p.Leu510Pro Uncertain significance Single submitter
- POU6F2 p.Leu538Phe Uncertain significance Single submitter
- POU6F2 p.Met156Val Uncertain significance Single submitter
- POU6F2 p.Met191Val Uncertain significance Single submitter
- POU6F2 p.Met341Val Uncertain significance Single submitter
- POU6F2 p.Met468Thr Uncertain significance Single submitter
-
POU6F2 p.Pro103Leu
Uncertain significance
Single submitter
hypogonadotropic hypogonadism
- POU6F2 p.Pro117Gln Uncertain significance Single submitter
- POU6F2 p.Pro241Ser Uncertain significance Single submitter
- POU6F2 p.Pro253Arg Uncertain significance Single submitter
- POU6F2 p.Pro253Gln Uncertain significance Single submitter
- POU6F2 p.Pro301Arg Uncertain significance Single submitter
- POU6F2 p.Pro302Leu Uncertain significance Single submitter
-
POU6F2 p.Pro316Gln
Uncertain significance
Single submitter
hypogonadotropic hypogonadism
- POU6F2 p.Pro319Leu Uncertain significance Single submitter
- POU6F2 p.Pro382Ser Uncertain significance Single submitter
- POU6F2 p.Pro472Leu Uncertain significance Single submitter
- POU6F2 p.Pro605Leu Uncertain significance Single submitter
- POU6F2 p.Pro645Ser Uncertain significance Single submitter
- POU6F2 p.Pro78Leu Uncertain significance Single submitter
- POU6F2 p.Ser242Leu Uncertain significance Single submitter
- POU6F2 p.Ser293Ala Uncertain significance Single submitter
- POU6F2 p.Ser293Tyr Uncertain significance Single submitter
- POU6F2 p.Ser332Arg Uncertain significance Single submitter
- POU6F2 p.Ser575Cys Uncertain significance Single submitter
- POU6F2 p.Ser662Phe Uncertain significance Single submitter
- POU6F2 p.Ser69Asn Uncertain significance Single submitter
- POU6F2 p.Ser69Ile Uncertain significance Single submitter
- POU6F2 p.Thr127Pro Uncertain significance Single submitter
- POU6F2 p.Thr427Ile Uncertain significance Single submitter
- POU6F2 p.Thr431Met Uncertain significance Single submitter
- POU6F2 p.Thr447Met Uncertain significance Single submitter
- POU6F2 p.Thr66Ile Uncertain significance Single submitter
- POU6F2 p.Thr87Ile Uncertain significance Single submitter
- POU6F2 p.Tyr675Cys Uncertain significance Single submitter
- POU6F2 p.Val473Ile Uncertain significance Single submitter
- POU6F2 p.Val50Leu Uncertain significance Single submitter
-
POU6F2 p.Pro282Ser
Uncertain significance
No assertion criteria
POU6F2-related disorder
Predictors split 23
The independent predictors disagree with each other — read with care.
- POU6F2 p.Ala519Gly Uncertain significance Single submitter
- POU6F2 p.Ala573Asp Uncertain significance Single submitter
-
POU6F2 p.Arg474Trp
Uncertain significance
Single submitter
hypogonadotropic hypogonadism
- POU6F2 p.Arg617His Uncertain significance Single submitter
- POU6F2 p.Asn367Thr Uncertain significance Single submitter
- POU6F2 p.Asn624Lys Uncertain significance Single submitter
- POU6F2 p.Asp714Gly Uncertain significance Single submitter
- POU6F2 p.Gln223Lys Uncertain significance Single submitter
- POU6F2 p.Gln279Lys Uncertain significance Single submitter
- POU6F2 p.Gln287Arg Uncertain significance Single submitter
- POU6F2 p.Glu668Gly Uncertain significance Single submitter
- POU6F2 p.Gly188Arg Uncertain significance Single submitter
- POU6F2 p.Ile425Thr Uncertain significance Single submitter
- POU6F2 p.Leu166Pro Uncertain significance Single submitter
- POU6F2 p.Leu494Ser Uncertain significance Single submitter
- POU6F2 p.Met341Lys Uncertain significance Single submitter
- POU6F2 p.Phe561Ser Uncertain significance Single submitter
- POU6F2 p.Pro241Arg Conflicting Single submitter
- POU6F2 p.Pro423Thr Uncertain significance Single submitter
- POU6F2 p.Ser471Arg Uncertain significance Single submitter
- POU6F2 p.Ser480Phe Uncertain significance Single submitter
- POU6F2 p.Ser599Thr Uncertain significance Single submitter
- POU6F2 p.Val491Met Uncertain significance Single submitter
All POU6F2 variants
Pathogenic 2
- p.Gln220His No assertion criteria Wilms tumor 5 ⚠
- p.Ser21Ter No assertion criteria Wilms tumor 5
Conflicting classifications of pathogenicity 4
- p.Asn658His Single submitter hypogonadotropic hypogonadism ⚠
- p.Gln214fs Single submitter Wilms tumor 5
- p.Leu213fs Single submitter Wilms tumor 5
- p.Pro241Arg Single submitter ⚠
Benign 10
- p.Ala274Val Single submitter
- p.Asn231Ser Single submitter
- p.Gln263His Single submitter
- p.Glu668Lys Single submitter
- p.Ser483= Single submitter
- c.1114-7C>T No assertion criteria POU6F2-related disorder
- p.Gln225del No assertion criteria POU6F2-related disorder
- p.Gln428= No assertion criteria POU6F2-related disorder
- p.Pro228Leu No assertion criteria POU6F2-related disorder
- p.Pro382= No assertion criteria POU6F2-related disorder
Benign/Likely benign 1
- c.1658+7C>T Multiple submitters
Likely benign 29
- p.Leu213Arg Multiple submitters
- p.Leu215= Multiple submitters
- p.Leu215His Multiple submitters
- p.Phe92= Multiple submitters
- c.1320+7G>A Single submitter
- c.1659-5C>T Single submitter
- p.Ala240= Single submitter
- p.Gln297= Single submitter
- p.Gln623= Single submitter
- p.Gly310= Single submitter
- p.Gly374= Single submitter
- p.Gly438= Single submitter
- p.Gly438Ser Single submitter
- p.Ile421= Single submitter
- p.Ile595= Single submitter
- p.Leu151= Single submitter
- p.Leu47= Single submitter
- p.Leu71= Single submitter
- p.Pro116= Single submitter
- p.Pro316Leu Single submitter
- p.Pro380= Single submitter
- p.Pro544= Single submitter
- p.Ser203Thr Single submitter Wilms tumor 5
- p.Ser299Ala Single submitter
- p.Ala336= No assertion criteria POU6F2-related disorder
- p.Leu213= No assertion criteria POU6F2-related disorder
- p.Leu213His No assertion criteria POU6F2-related disorder
- p.Ser390= No assertion criteria POU6F2-related disorder
- p.Val449= No assertion criteria POU6F2-related disorder
Uncertain significance 113
- p.Arg514Gln Multiple submitters POU6F2-related disorder
- p.Gly121Glu Multiple submitters hypogonadotropic hypogonadism
- p.Pro437Leu Multiple submitters hypogonadotropic hypogonadism
- p.Ala132Ser Single submitter ⚠
- p.Ala145Val Single submitter ⚠
- p.Ala237Asp Single submitter ⚠
- p.Ala240Val Single submitter ⚠
- p.Ala260Thr Single submitter ⚠
- p.Ala336Val Single submitter ⚠
- p.Ala408Thr Single submitter ⚠
- p.Ala40Asp Single submitter
- p.Ala462Thr Single submitter ⚠
- p.Ala476Gly Single submitter ⚠
- p.Ala476Pro Single submitter ⚠
- p.Ala519Gly Single submitter ⚠
- p.Ala545Val Single submitter ⚠
- p.Ala573Asp Single submitter ⚠
- p.Ala573Thr Single submitter ⚠
- p.Ala704Val Single submitter ⚠
- p.Arg474Gln Single submitter ⚠
- p.Arg474Trp Single submitter hypogonadotropic hypogonadism ⚠
- p.Arg523Trp Single submitter hypogonadotropic hypogonadism ⚠
- p.Arg609Gln Single submitter ⚠
- p.Arg617His Single submitter ⚠
- p.Arg619Gln Single submitter ⚠
- p.Arg677Gln Single submitter ⚠
- p.Arg95Gly Single submitter ⚠
- p.Asn147Ser Single submitter hypogonadotropic hypogonadism ⚠
- p.Asn177His Single submitter ⚠
- p.Asn367Thr Single submitter ⚠
- p.Asn624Lys Single submitter ⚠
- p.Asp62Gly Single submitter ⚠
- p.Asp714Gly Single submitter ⚠
- p.Gln130Glu Single submitter ⚠
- p.Gln212_Leu213insGlnLeuGln Single submitter Wilms tumor 5
- p.Gln223Lys Single submitter ⚠
- p.Gln225_Pro226insGln Single submitter Wilms tumor 5
- p.Gln279Lys Single submitter ⚠
- p.Gln287Arg Single submitter ⚠
- p.Gln440Leu Single submitter ⚠
- p.Glu542Lys Single submitter ⚠
- p.Glu668Gly Single submitter ⚠
- p.Glu702Lys Single submitter ⚠
- p.Gly137Ala Single submitter ⚠
- p.Gly137Ser Single submitter ⚠
- p.Gly188Arg Single submitter ⚠
- p.Gly492Ser Single submitter ⚠
- p.Gly528Asp Single submitter ⚠
- p.Gly543Val Single submitter ⚠
- p.Gly630Arg Single submitter hypogonadotropic hypogonadism ⚠
- p.His109Asn Single submitter ⚠
- p.His463Tyr Single submitter ⚠
- p.Ile344Thr Single submitter ⚠
- p.Ile373Asn Single submitter ⚠
- p.Ile425Thr Single submitter ⚠
- p.Ile435Val Single submitter ⚠
- p.Ile572Val Single submitter ⚠
- p.Ile603Met Single submitter ⚠
- p.Leu126Val Single submitter ⚠
- p.Leu166Pro Single submitter ⚠
- p.Leu215Phe Single submitter ⚠
- p.Leu494Ser Single submitter ⚠
- p.Leu510Pro Single submitter ⚠
- p.Leu538Phe Single submitter ⚠
- p.Met156Val Single submitter ⚠
- p.Met191Val Single submitter ⚠
- p.Met341Lys Single submitter ⚠
- p.Met341Val Single submitter ⚠
- p.Met468Thr Single submitter ⚠
- p.Phe154Val Single submitter Wilms tumor 5
- p.Phe561Ser Single submitter ⚠
- p.Pro103Leu Single submitter hypogonadotropic hypogonadism ⚠
- p.Pro117Gln Single submitter ⚠
- p.Pro241Ser Single submitter ⚠
- p.Pro253Arg Single submitter ⚠
- p.Pro253Gln Single submitter ⚠
- p.Pro301Arg Single submitter ⚠
- p.Pro302Leu Single submitter ⚠
- p.Pro316Gln Single submitter hypogonadotropic hypogonadism ⚠
- p.Pro319Leu Single submitter ⚠
- p.Pro382Ser Single submitter ⚠
- p.Pro423Thr Single submitter ⚠
- p.Pro472Leu Single submitter ⚠
- p.Pro605Leu Single submitter ⚠
- p.Pro645Ser Single submitter ⚠
- p.Pro78Leu Single submitter ⚠
- p.Ser242Leu Single submitter ⚠
- p.Ser293Ala Single submitter ⚠
- p.Ser293Tyr Single submitter ⚠
- p.Ser332Arg Single submitter ⚠
- p.Ser471Arg Single submitter ⚠
- p.Ser480Phe Single submitter ⚠
- p.Ser575Cys Single submitter ⚠
- p.Ser599Thr Single submitter ⚠
- p.Ser631Asn Single submitter
- p.Ser662Phe Single submitter ⚠
- p.Ser69Asn Single submitter ⚠
- p.Ser69Ile Single submitter ⚠
- p.Thr127Pro Single submitter ⚠
- p.Thr361Ile Single submitter
- p.Thr427Ile Single submitter ⚠
- p.Thr431Met Single submitter ⚠
- p.Thr447Met Single submitter ⚠
- p.Thr66Ile Single submitter ⚠
- p.Thr87Ile Single submitter ⚠
- p.Tyr586Cys Single submitter
- p.Tyr675Cys Single submitter ⚠
- p.Val135Ala Single submitter
- p.Val365Leu Single submitter hypogonadotropic hypogonadism
- p.Val473Ile Single submitter ⚠
- p.Val491Met Single submitter ⚠
- p.Val50Leu Single submitter ⚠
- p.Pro282Ser No assertion criteria POU6F2-related disorder ⚠