PRCD — 144 ClinVar variants
All ClinVar germline PRCD variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 31 flagged for review →
7 Pathogenic · 2 Pathogenic/Likely pathogenic · 4 Likely pathogenic · 4 Conflicting · 7 Benign · 1 Benign/Likely benign · 43 Likely benign · 76 Uncertain significance
Full PRCD gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 31
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 1
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
-
PRCD p.Pro25Thr
Pathogenic
Single submitter
retinitis pigmentosa
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
PRCD p.Asp29Asn
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 24
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- PRCD p.Ala12Thr Uncertain significance Multiple submitters
-
PRCD p.Arg17His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PRCD p.Arg18Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
- PRCD p.Arg22Gln Uncertain significance Multiple submitters
-
PRCD p.Asp29His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PRCD p.Leu5Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PRCD p.Phe19Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
- PRCD p.Val30Met Uncertain significance Multiple submitters
-
PRCD p.Ala41Val
Uncertain significance
Single submitter
Inborn genetic diseases
- PRCD p.Arg16Cys Uncertain significance Single submitter
- PRCD p.Arg16His Uncertain significance Single submitter
- PRCD p.Arg22Gly Uncertain significance Single submitter
- PRCD p.Arg35Lys Uncertain significance Single submitter
- PRCD p.Arg35Met Uncertain significance Single submitter
- PRCD p.Arg48Lys Uncertain significance Single submitter
-
PRCD p.Asp40Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRCD p.Asp42Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- PRCD p.Gln44His Uncertain significance Single submitter
- PRCD p.Gly36Asp Uncertain significance Single submitter
-
PRCD p.Leu39Phe
Uncertain significance
Single submitter
Inborn genetic diseases
- PRCD p.Pro25Gln Uncertain significance Single submitter
- PRCD p.Pro52Leu Uncertain significance Single submitter
- PRCD p.Ser37Asn Uncertain significance Single submitter
-
PRCD p.Thr3Ala
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 5
The independent predictors disagree with each other — read with care.
-
PRCD p.Cys2Tyr
Uncertain significance
Multiple submitters
retinitis pigmentosa 36
-
PRCD p.Gly32Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
- PRCD p.Lys54Asn Uncertain significance Single submitter
- PRCD p.Val23Leu Uncertain significance Single submitter
- PRCD p.Val23Phe Uncertain significance Single submitter
All PRCD variants
Pathogenic 7
- p.Arg18Ter Multiple submitters retinitis pigmentosa
- p.Arg22Ter Multiple submitters PRCD-related disorders
- p.Asn21fs Multiple submitters PRCD-related disorders
- p.Arg35fs Single submitter
- p.Gln24Ter Single submitter
- p.Pro25Thr Single submitter retinitis pigmentosa ⚠
- c.143+1G>A No assertion criteria retinitis pigmentosa 36
Pathogenic/Likely pathogenic 2
Likely pathogenic 4
- p.Ser38Ter Multiple submitters retinitis pigmentosa
- c.74+2T>C Single submitter
- c.75-2A>C Single submitter
- p.Thr4fs Single submitter retinitis pigmentosa 36
Conflicting classifications of pathogenicity 4
- c.74+14C>T Single submitter retinitis pigmentosa
- p.Asp29Asn Single submitter Inborn genetic diseases ⚠
- p.Pro25Leu Single submitter PRCD-related disorders
- p.Ser38= Single submitter retinitis pigmentosa
Benign 7
- c.74+36C>G Multiple submitters retinitis pigmentosa 36
- c.*1185A>C Multiple submitters retinitis pigmentosa
- c.*1397A>G Multiple submitters retinitis pigmentosa
- c.*1405C>T Multiple submitters retinitis pigmentosa
- c.*1439T>C Multiple submitters retinitis pigmentosa
- c.*60-19C>T Multiple submitters
- c.*760C>T Multiple submitters retinitis pigmentosa
Benign/Likely benign 1
- p.Arg17Cys Multiple submitters retinitis pigmentosa
Likely benign 43
- c.144-20C>T Multiple submitters
- c.74+8A>T Multiple submitters
- c.*933G>A Multiple submitters retinitis pigmentosa
- p.Ala41= Multiple submitters
- c.143+10G>T Single submitter
- c.143+12G>A Single submitter
- c.143+16G>T Single submitter
- c.143+19C>T Single submitter
- c.143+20T>C Single submitter
- c.144-10C>G Single submitter
- c.144-11C>T Single submitter
- c.144-12T>C Single submitter
- c.144-17T>C Single submitter
- c.144-18G>T Single submitter
- c.144-19A>G Single submitter
- c.74+13C>G Single submitter
- c.74+14C>A Single submitter
- c.74+15G>A Single submitter
- c.74+15G>T Single submitter
- c.74+16G>C Single submitter
- c.74+18C>T Single submitter
- c.75-14C>G Single submitter
- c.75-19C>G Single submitter
- c.75-20C>T Single submitter
- c.75-7C>T Single submitter
- c.75-9C>T Single submitter
- c.*151A>G Single submitter
- p.Arg16= Single submitter
- p.Arg17= Single submitter
- p.Arg35= Single submitter
- p.Asn21= Single submitter
- p.Asp29= Single submitter
- p.Asp42= Single submitter
- p.Glu51= Single submitter
- p.Gly32= Single submitter
- p.Gly36= Single submitter
- p.Leu14= Single submitter
- p.Leu5= Single submitter
- p.Leu53= Single submitter
- p.Leu7= Single submitter
- p.Phe6= Single submitter
- p.Ser28= Single submitter
- p.Thr4= Single submitter
Uncertain significance 76
- c.75-3C>G Multiple submitters retinitis pigmentosa
- c.*1259G>A Multiple submitters retinitis pigmentosa
- c.*1480C>G Multiple submitters retinitis pigmentosa
- c.*266C>T Multiple submitters retinitis pigmentosa
- c.*764C>T Multiple submitters retinitis pigmentosa
- c.*932C>T Multiple submitters retinitis pigmentosa
- p.Ala12Thr Multiple submitters ⚠
- p.Arg17His Multiple submitters Inborn genetic diseases ⚠
- p.Arg18Gln Multiple submitters Inborn genetic diseases ⚠
- p.Arg22Gln Multiple submitters ⚠
- p.Asp29His Multiple submitters Inborn genetic diseases ⚠
- p.Cys2Tyr Multiple submitters retinitis pigmentosa 36 ⚠
- p.Gly32Val Multiple submitters Inborn genetic diseases ⚠
- p.Leu5Val Multiple submitters Inborn genetic diseases ⚠
- p.Phe19Ile Multiple submitters Inborn genetic diseases ⚠
- p.Val23fs Multiple submitters
- p.Val30Met Multiple submitters ⚠
- c.143+3A>G Single submitter
- c.74+5G>C Single submitter
- c.75-10C>A Single submitter retinitis pigmentosa
- c.-82T>C Single submitter retinitis pigmentosa
- c.-94G>A Single submitter retinitis pigmentosa
- c.*1002G>A Single submitter retinitis pigmentosa
- c.*1010G>A Single submitter retinitis pigmentosa
- c.*1061C>T Single submitter retinitis pigmentosa
- c.*1097T>A Single submitter retinitis pigmentosa
- c.*115G>A Single submitter retinitis pigmentosa
- c.*1186G>A Single submitter retinitis pigmentosa
- c.*1188C>T Single submitter retinitis pigmentosa
- c.*1238G>A Single submitter retinitis pigmentosa
- c.*1247C>A Single submitter retinitis pigmentosa
- c.*1268C>A Single submitter retinitis pigmentosa
- c.*1343C>T Single submitter retinitis pigmentosa
- c.*1347C>T Single submitter retinitis pigmentosa
- c.*1410G>C Single submitter retinitis pigmentosa
- c.*1411G>A Single submitter retinitis pigmentosa
- c.*1508C>T Single submitter retinitis pigmentosa
- c.*1509G>A Single submitter retinitis pigmentosa
- c.*1618C>T Single submitter retinitis pigmentosa
- c.*1650T>C Single submitter retinitis pigmentosa
- c.*1714C>T Single submitter retinitis pigmentosa
- c.*241G>A Single submitter retinitis pigmentosa
- c.*248A>G Single submitter retinitis pigmentosa
- c.*260C>T Single submitter retinitis pigmentosa
- c.*265C>T Single submitter retinitis pigmentosa
- c.*413A>G Single submitter retinitis pigmentosa
- c.*477C>T Single submitter retinitis pigmentosa
- c.*578C>G Single submitter retinitis pigmentosa
- c.*590C>A Single submitter retinitis pigmentosa
- c.*605G>A Single submitter retinitis pigmentosa
- c.*643C>T Single submitter retinitis pigmentosa
- c.*687G>A Single submitter retinitis pigmentosa
- c.*749C>T Single submitter retinitis pigmentosa
- c.*881G>A Single submitter retinitis pigmentosa
- c.*907G>A Single submitter retinitis pigmentosa
- p.Ala41Val Single submitter Inborn genetic diseases ⚠
- p.Arg16Cys Single submitter ⚠
- p.Arg16His Single submitter ⚠
- p.Arg22Gly Single submitter ⚠
- p.Arg22Pro Single submitter
- p.Arg35Lys Single submitter ⚠
- p.Arg35Met Single submitter ⚠
- p.Arg48Lys Single submitter ⚠
- p.Asp40Val Single submitter Inborn genetic diseases ⚠
- p.Asp42Glu Single submitter Inborn genetic diseases ⚠
- p.Gln44His Single submitter ⚠
- p.Gly36Asp Single submitter ⚠
- p.Gly47= Single submitter
- p.Leu39Phe Single submitter Inborn genetic diseases ⚠
- p.Lys54Asn Single submitter ⚠
- p.Pro25Gln Single submitter ⚠
- p.Pro52Leu Single submitter ⚠
- p.Ser37Asn Single submitter ⚠
- p.Thr3Ala Single submitter Inborn genetic diseases ⚠
- p.Val23Leu Single submitter ⚠
- p.Val23Phe Single submitter ⚠