PRKD1 — 292 ClinVar variants

All ClinVar germline PRKD1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 187 flagged for review →

2 Pathogenic · 8 Likely pathogenic · 9 Conflicting · 13 Benign · 11 Benign/Likely benign · 50 Likely benign · 199 Uncertain significance

Full PRKD1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 187

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 8

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 145

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 34

The independent predictors disagree with each other — read with care.

All PRKD1 variants

Pathogenic 2

  • p.Gly592Arg No assertion criteria congenital heart defects and ectodermal dysplasia
  • p.Leu299Trp No assertion criteria congenital heart defects and ectodermal dysplasia

Likely pathogenic 8

  • c.1905+2T>A Single submitter congenital heart defects and ectodermal dysplasia
  • c.1906-1G>T Single submitter congenital heart defects and ectodermal dysplasia
  • c.265-1G>T Single submitter congenital heart defects and ectodermal dysplasia
  • p.Arg439Gln Single submitter congenital heart defects and ectodermal dysplasia
  • p.Arg603Cys Single submitter congenital heart defects and ectodermal dysplasia
  • p.Gly595Arg Single submitter congenital heart defects and ectodermal dysplasia
  • p.Gly676fs Single submitter congenital heart defects and ectodermal dysplasia
  • p.Ile614Thr Single submitter

Conflicting classifications of pathogenicity 9

Benign 13

Benign/Likely benign 11

Likely benign 50

Uncertain significance 199