PRPF31 — 850 ClinVar variants

All ClinVar germline PRPF31 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 211 flagged for review →

151 Pathogenic · 33 Pathogenic/Likely pathogenic · 99 Likely pathogenic · 59 Conflicting · 23 Benign · 16 Benign/Likely benign · 213 Likely benign · 256 Uncertain significance

Full PRPF31 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 211

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 20

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predicted LoF vs a conflicting call 1

ClinVar submitters conflict, and it's a predicted loss-of-function change in a gene where LoF causes disease — flagged for review, not resolved (verify NMD-escape for C-terminal truncations). Non-missense.

Predictors lean, ClinVar uncertain 136

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 53

The independent predictors disagree with each other — read with care.

All PRPF31 variants

Pathogenic 151

Pathogenic/Likely pathogenic 33

  • c.239-1G>A Multiple submitters PRPF31-related disorder
  • c.239-1G>T Multiple submitters PRPF31-related disorder
  • c.239-2A>G Multiple submitters retinitis pigmentosa
  • c.322+1G>A Multiple submitters retinitis pigmentosa
  • c.322+4_322+7del Multiple submitters PRPF31-related disorder
  • c.323-1G>C Multiple submitters inherited retinal dystrophy
  • c.421-1G>T Multiple submitters PRPF31-related disorder
  • c.527+1G>A Multiple submitters PRPF31-related disorder
  • c.527+3A>G Multiple submitters PRPF31-related disorder
  • c.528-39_531del Multiple submitters PRPF31-related disorder
  • c.855+2T>C Multiple submitters PRPF31-related disorder
  • c.946-2A>G Multiple submitters PRPF31-related disorder
  • c.-9+1G>T Multiple submitters retinitis pigmentosa
  • p.Ala302Glnfs Multiple submitters retinitis pigmentosa 11
  • p.Ala86fs Multiple submitters PRPF31-related disorder
  • p.Arg354Ter Multiple submitters PRPF31-related disorder
  • p.Arg377fs Multiple submitters inherited retinal dystrophy
  • p.Asp56fs Multiple submitters PRPF31-related disorder
  • p.Cys299Arg Multiple submitters PRPF31-related disorder
  • p.Gln175Ter Multiple submitters PRPF31-related disorder
  • p.Gln350Ter Multiple submitters PRPF31-related disorder
  • p.Gln374fs Multiple submitters PRPF31-related disorder
  • p.Gln389Ter Multiple submitters retinitis pigmentosa
  • p.Gln40Ter Multiple submitters inherited retinal dystrophy
  • p.Glu69fs Multiple submitters retinitis pigmentosa 11
  • p.Gly317fs Multiple submitters retinitis pigmentosa
  • p.Leu195fs Multiple submitters retinitis pigmentosa
  • p.Lys117Ter Multiple submitters PRPF31-related disorder
  • p.Lys488fs Multiple submitters
  • p.Met65fs Multiple submitters PRPF31-related disorder
  • p.Ser266Ter Multiple submitters PRPF31-related disorder
  • p.Trp331Ter Multiple submitters PRPF31-related disorder
  • p.Val94fs Multiple submitters retinitis pigmentosa

Likely pathogenic 99

Conflicting classifications of pathogenicity 59

Benign 23

Benign/Likely benign 16

Likely benign 213

Uncertain significance 256