PRPH — 86 ClinVar variants
All ClinVar germline PRPH variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 64 flagged for review →
3 Likely pathogenic · 3 Conflicting · 9 Benign · 1 Benign/Likely benign · 4 Likely benign · 66 Uncertain significance
Full PRPH gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 64
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
PRPH p.Thr187Met
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 52
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
PRPH p.Glu233Lys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PRPH p.Ile419Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PRPH p.Ala109Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Ala132Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Ala132Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Ala193Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Ala193Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Ala49Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Ala67Pro
Uncertain significance
Single submitter
Inborn genetic diseases
- PRPH p.Ala83Val Uncertain significance Single submitter
-
PRPH p.Arg152Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Arg153Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Arg182Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Arg19Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Arg201His
Uncertain significance
Single submitter
amyotrophic lateral sclerosis type 1
-
PRPH p.Arg211Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- PRPH p.Arg459His Uncertain significance Single submitter
-
PRPH p.Arg56Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Asn110Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Asn122Asp
Uncertain significance
Single submitter
amyotrophic lateral sclerosis type 1
-
PRPH p.Asp163His
Uncertain significance
Single submitter
Inborn genetic diseases
- PRPH p.Asp192Glu Uncertain significance Single submitter
-
PRPH p.Asp223Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Asp267Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Gln146Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Glu128Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Glu156Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Glu215Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Glu254Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Glu84Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Glu84Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Gly11Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Gly30Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Gly66Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.His232Arg
Uncertain significance
Single submitter
amyotrophic lateral sclerosis type 1
-
PRPH p.His412Pro
Uncertain significance
Single submitter
amyotrophic lateral sclerosis type 10
-
PRPH p.Ile225Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Leu199Pro
Uncertain significance
Single submitter
Inborn genetic diseases
- PRPH p.Leu73Pro Uncertain significance Single submitter
-
PRPH p.Phe80Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Ser242Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Ser2Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Ser454Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Ser6Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Ser6Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Thr208Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- PRPH p.Thr262Arg Uncertain significance Single submitter
-
PRPH p.Thr422Ala
Uncertain significance
Single submitter
amyotrophic lateral sclerosis type 1
- PRPH p.Thr93Met Uncertain significance Single submitter
-
PRPH p.Tyr470Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Tyr470His
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Val423Gly
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 11
The independent predictors disagree with each other — read with care.
-
PRPH p.Arg116His
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Arg139His
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Arg164Trp
Uncertain significance
Single submitter
Inborn genetic diseases
- PRPH p.Arg435Trp Benign Single submitter
-
PRPH p.Asp141Tyr
Conflicting
Single submitter
amyotrophic lateral sclerosis
-
PRPH p.Glu194Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Ile218Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Ser28Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Ser35Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Tyr287Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
PRPH p.Val167Met
Uncertain significance
Single submitter
Inborn genetic diseases
All PRPH variants
Likely pathogenic 3
- c.871-1G>A Single submitter amyotrophic lateral sclerosis type 1
- p.Gln249Ter Single submitter amyotrophic lateral sclerosis type 1
- p.Gln307Ter Single submitter amyotrophic lateral sclerosis type 1
Conflicting classifications of pathogenicity 3
- c.607-1G>A Single submitter amyotrophic lateral sclerosis type 1
- p.Asp141Tyr Single submitter amyotrophic lateral sclerosis ⚠
- p.Thr187Met Single submitter Inborn genetic diseases ⚠
Benign 9
- c.1267+58T>C Multiple submitters
- c.1268-34T>C Multiple submitters
- c.545+69G>C Multiple submitters
- c.702+27T>C Multiple submitters
- c.703-163T>C Multiple submitters
- c.-24G>C Multiple submitters
- p.Arg9Gln Multiple submitters amyotrophic lateral sclerosis type 1
- p.Arg435Trp Single submitter ⚠
- p.Leu118Met Single submitter
Benign/Likely benign 1
- c.996+1G>A Multiple submitters
Likely benign 4
- p.Ala277Thr Multiple submitters
- p.Phe21= Multiple submitters
- p.Arg269= Single submitter
- p.Pro23= Single submitter
Uncertain significance 66
- p.Glu233Lys Multiple submitters Inborn genetic diseases ⚠
- p.Ile419Met Multiple submitters Inborn genetic diseases ⚠
- p.Ala109Val Single submitter Inborn genetic diseases ⚠
- p.Ala132Thr Single submitter Inborn genetic diseases ⚠
- p.Ala132Val Single submitter Inborn genetic diseases ⚠
- p.Ala193Glu Single submitter Inborn genetic diseases ⚠
- p.Ala193Gly Single submitter Inborn genetic diseases ⚠
- p.Ala49Val Single submitter Inborn genetic diseases ⚠
- p.Ala67Pro Single submitter Inborn genetic diseases ⚠
- p.Ala69_Leu70insGlyAla Single submitter
- p.Ala83Val Single submitter ⚠
- p.Arg116His Single submitter Inborn genetic diseases ⚠
- p.Arg139His Single submitter Inborn genetic diseases ⚠
- p.Arg152Trp Single submitter Inborn genetic diseases ⚠
- p.Arg153Gly Single submitter Inborn genetic diseases ⚠
- p.Arg164Trp Single submitter Inborn genetic diseases ⚠
- p.Arg182Ser Single submitter Inborn genetic diseases ⚠
- p.Arg19Cys Single submitter Inborn genetic diseases ⚠
- p.Arg201His Single submitter amyotrophic lateral sclerosis type 1 ⚠
- p.Arg211Leu Single submitter Inborn genetic diseases ⚠
- p.Arg459His Single submitter ⚠
- p.Arg56Pro Single submitter Inborn genetic diseases ⚠
- p.Arg64Ter Single submitter amyotrophic lateral sclerosis
- p.Asn105fs Single submitter
- p.Asn110Ser Single submitter Inborn genetic diseases ⚠
- p.Asn122Asp Single submitter amyotrophic lateral sclerosis type 1 ⚠
- p.Asp163His Single submitter Inborn genetic diseases ⚠
- p.Asp192Glu Single submitter ⚠
- p.Asp223Asn Single submitter Inborn genetic diseases ⚠
- p.Asp267Asn Single submitter Inborn genetic diseases ⚠
- p.Gln146Lys Single submitter Inborn genetic diseases ⚠
- p.Glu128Val Single submitter Inborn genetic diseases ⚠
- p.Glu156Gln Single submitter Inborn genetic diseases ⚠
- p.Glu194Ala Single submitter Inborn genetic diseases ⚠
- p.Glu215Gly Single submitter Inborn genetic diseases ⚠
- p.Glu254Asp Single submitter Inborn genetic diseases ⚠
- p.Glu84Gln Single submitter Inborn genetic diseases ⚠
- p.Glu84Val Single submitter Inborn genetic diseases ⚠
- p.Gly11Ala Single submitter Inborn genetic diseases ⚠
- p.Gly30Ala Single submitter Inborn genetic diseases ⚠
- p.Gly66Arg Single submitter Inborn genetic diseases ⚠
- p.His232Arg Single submitter amyotrophic lateral sclerosis type 1 ⚠
- p.His412Pro Single submitter amyotrophic lateral sclerosis type 10 ⚠
- p.Ile218Thr Single submitter Inborn genetic diseases ⚠
- p.Ile225Thr Single submitter Inborn genetic diseases ⚠
- p.Leu199Pro Single submitter Inborn genetic diseases ⚠
- p.Leu73Pro Single submitter ⚠
- p.Leu86Phe Single submitter
- p.Phe80Val Single submitter Inborn genetic diseases ⚠
- p.Ser242Gly Single submitter Inborn genetic diseases ⚠
- p.Ser28Tyr Single submitter Inborn genetic diseases ⚠
- p.Ser2Thr Single submitter Inborn genetic diseases ⚠
- p.Ser35Trp Single submitter Inborn genetic diseases ⚠
- p.Ser454Phe Single submitter Inborn genetic diseases ⚠
- p.Ser6Leu Single submitter Inborn genetic diseases ⚠
- p.Ser6Pro Single submitter Inborn genetic diseases ⚠
- p.Ser81Pro Single submitter Inborn genetic diseases
- p.Thr208Ile Single submitter Inborn genetic diseases ⚠
- p.Thr262Arg Single submitter ⚠
- p.Thr422Ala Single submitter amyotrophic lateral sclerosis type 1 ⚠
- p.Thr93Met Single submitter ⚠
- p.Tyr287Cys Single submitter Inborn genetic diseases ⚠
- p.Tyr470Cys Single submitter Inborn genetic diseases ⚠
- p.Tyr470His Single submitter Inborn genetic diseases ⚠
- p.Val167Met Single submitter Inborn genetic diseases ⚠
- p.Val423Gly Single submitter Inborn genetic diseases ⚠