PSEN1 — 536 ClinVar variants

All ClinVar germline PSEN1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 181 flagged for review →

77 Pathogenic · 20 Pathogenic/Likely pathogenic · 51 Likely pathogenic · 51 Conflicting · 19 Benign · 23 Benign/Likely benign · 84 Likely benign · 211 Uncertain significance

Full PSEN1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 181

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 22

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 81

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 65

The independent predictors disagree with each other — read with care.

All PSEN1 variants

Pathogenic 77

Pathogenic/Likely pathogenic 20

Likely pathogenic 51

Conflicting classifications of pathogenicity 51

Benign 19

Benign/Likely benign 23

  • c.1248+8T>C Multiple submitters Alzheimer disease 3
  • c.868+16G>T Multiple submitters Pick disease
  • c.*313C>A Multiple submitters dilated cardiomyopathy 1U
  • c.*3358A>G Multiple submitters dilated cardiomyopathy 1U
  • c.*3566A>G Multiple submitters dilated cardiomyopathy 1U
  • c.*3632G>A Multiple submitters dilated cardiomyopathy 1U
  • c.*364T>C Multiple submitters Alzheimer disease 3
  • c.*3889G>A Multiple submitters Alzheimer disease 3
  • c.*4030A>G Multiple submitters dilated cardiomyopathy 1U
  • p.Asn32= Multiple submitters Alzheimer disease 3
  • p.Glu318Gly Multiple submitters dilated cardiomyopathy 1U
  • p.Thr281= Multiple submitters Inborn genetic diseases
  • c.*1690T>C Single submitter dilated cardiomyopathy 1U
  • c.*1791A>T Single submitter Alzheimer disease 3
  • c.*2430T>C Single submitter dilated cardiomyopathy 1U
  • c.*3360A>G Single submitter dilated cardiomyopathy 1U
  • c.*3525A>G Single submitter dilated cardiomyopathy 1U
  • c.*3538C>G Single submitter dilated cardiomyopathy 1U
  • c.*3637C>T Single submitter dilated cardiomyopathy 1U
  • c.*3823G>A Single submitter Alzheimer disease 3
  • c.*3831C>T Single submitter dilated cardiomyopathy 1U
  • c.*4147T>G Single submitter dilated cardiomyopathy 1U
  • c.*449T>C Single submitter dilated cardiomyopathy 1U

Likely benign 84

Uncertain significance 211