PSEN2 — 348 ClinVar variants

All ClinVar germline PSEN2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 144 flagged for review →

7 Pathogenic · 1 Pathogenic/Likely pathogenic · 2 Likely pathogenic · 21 Conflicting · 31 Benign · 20 Benign/Likely benign · 97 Likely benign · 169 Uncertain significance

Full PSEN2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 144

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 7

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 83

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 54

The independent predictors disagree with each other — read with care.

All PSEN2 variants

Pathogenic 7

Pathogenic/Likely pathogenic 1

Likely pathogenic 2

Conflicting classifications of pathogenicity 21

Benign 31

Benign/Likely benign 20

  • c.886+16G>A Multiple submitters Alzheimer disease 4
  • p.Ala252= Multiple submitters dilated cardiomyopathy 1V
  • p.Arg62His Multiple submitters Alzheimer disease
  • p.Arg71Trp Multiple submitters Alzheimer disease 4
  • p.Cys400= Multiple submitters Alzheimer disease 4
  • p.Glu54Asp Multiple submitters Alzheimer disease 4
  • p.His169Asn Multiple submitters Alzheimer disease 4
  • p.Met174Val Multiple submitters Alzheimer disease 4
  • p.Phe392= Multiple submitters Alzheimer disease 4
  • p.Pro287= Multiple submitters Alzheimer disease 4
  • p.Ser130Leu Multiple submitters Alzheimer disease 4 ⚠
  • p.Ser147= Multiple submitters dilated cardiomyopathy 1V
  • p.Ser236= Multiple submitters dilated cardiomyopathy 1V
  • p.Ser251= Multiple submitters Alzheimer disease 4
  • p.Thr122= Multiple submitters Alzheimer disease 4
  • p.Thr301= Multiple submitters dilated cardiomyopathy 1V
  • p.Thr44= Multiple submitters Alzheimer disease 4
  • p.Val214Leu Multiple submitters Alzheimer disease 4
  • c.*405G>T Single submitter dilated cardiomyopathy 1V
  • c.*487G>C Single submitter dilated cardiomyopathy 1V

Likely benign 97

Uncertain significance 169