PSMD12 — 157 ClinVar variants
All ClinVar germline PSMD12 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 90 flagged for review →
21 Pathogenic · 1 Pathogenic/Likely pathogenic · 13 Likely pathogenic · 2 Conflicting · 4 Benign · 10 Likely benign · 106 Uncertain significance
Full PSMD12 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 90
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
PSMD12 p.Ala367Thr
Conflicting
Single submitter
Inborn genetic diseases
-
PSMD12 p.Lys294Arg
Conflicting
Single submitter
Stankiewicz-Isidor syndrome
Predictors lean, ClinVar uncertain 64
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
PSMD12 p.Asp339Glu
Uncertain significance
Multiple submitters
Stankiewicz-Isidor syndrome
-
PSMD12 p.Lys221Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PSMD12 p.Pro300Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PSMD12 p.Thr443Met
Uncertain significance
Multiple submitters
Stankiewicz-Isidor syndrome
-
PSMD12 p.Ala100Val
Uncertain significance
Single submitter
Stankiewicz-Isidor syndrome
- PSMD12 p.Ala391Gly Uncertain significance Single submitter
- PSMD12 p.Ala391Val Uncertain significance Single submitter
-
PSMD12 p.Arg123Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Arg372Trp
Uncertain significance
Single submitter
PSMD12-related disorder
- PSMD12 p.Arg408Thr Uncertain significance Single submitter
- PSMD12 p.Arg55Cys Uncertain significance Single submitter
-
PSMD12 p.Arg94Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Arg94Trp
Uncertain significance
Single submitter
Inborn genetic diseases
- PSMD12 p.Asn228Ser Uncertain significance Single submitter
-
PSMD12 p.Asn433Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- PSMD12 p.Asn454Asp Uncertain significance Single submitter
- PSMD12 p.Asp198Val Uncertain significance Single submitter
- PSMD12 p.Asp252Asn Uncertain significance Single submitter
- PSMD12 p.Asp285His Uncertain significance Single submitter
- PSMD12 p.Asp59Gly Uncertain significance Single submitter
-
PSMD12 p.Gln283Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Gln430Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- PSMD12 p.Glu139Asp Uncertain significance Single submitter
-
PSMD12 p.Glu161Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Glu42Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- PSMD12 p.Glu449Val Uncertain significance Single submitter
-
PSMD12 p.Gly331Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- PSMD12 p.Ile250Arg Uncertain significance Single submitter
-
PSMD12 p.Ile250Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Ile250Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Ile290Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Ile402Val
Uncertain significance
Single submitter
PSMD12-related disorder
- PSMD12 p.Ile87Val Uncertain significance Single submitter
-
PSMD12 p.Leu308Pro
Uncertain significance
Single submitter
Inborn genetic diseases
- PSMD12 p.Leu314Ser Uncertain significance Single submitter
-
PSMD12 p.Leu381Phe
Uncertain significance
Single submitter
PSMD12-related disorder
- PSMD12 p.Leu393Phe Uncertain significance Single submitter
- PSMD12 p.Leu67Ser Uncertain significance Single submitter
-
PSMD12 p.Lys212Arg
Uncertain significance
Single submitter
Stankiewicz-Isidor syndrome
-
PSMD12 p.Lys368Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Lys405Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Lys448Glu
Uncertain significance
Single submitter
Stankiewicz-Isidor syndrome
-
PSMD12 p.Met366Val
Uncertain significance
Single submitter
Stankiewicz-Isidor syndrome
-
PSMD12 p.Met375Thr
Uncertain significance
Single submitter
PSMD12-related disorder
- PSMD12 p.Met436Leu Uncertain significance Single submitter
-
PSMD12 p.Met451Val
Uncertain significance
Single submitter
Stankiewicz-Isidor syndrome
-
PSMD12 p.Pro119Ser
Uncertain significance
Single submitter
Stankiewicz-Isidor syndrome
- PSMD12 p.Pro300Ala Uncertain significance Single submitter
-
PSMD12 p.Ser164Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Ser269Asn
Uncertain significance
Single submitter
Stankiewicz-Isidor syndrome
- PSMD12 p.Ser335Arg Uncertain significance Single submitter
-
PSMD12 p.Ser62Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- PSMD12 p.Thr132Ile Uncertain significance Single submitter
- PSMD12 p.Thr173Pro Uncertain significance Single submitter
- PSMD12 p.Thr311Ser Uncertain significance Single submitter
- PSMD12 p.Thr344Ala Uncertain significance Single submitter
- PSMD12 p.Thr56Ala Uncertain significance Single submitter
-
PSMD12 p.Tyr199Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Tyr273Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Val386Ala
Uncertain significance
Single submitter
Stankiewicz-Isidor syndrome
- PSMD12 p.Val439Phe Uncertain significance Single submitter
-
PSMD12 p.Asp323Asn
Uncertain significance
No assertion criteria
PSMD12-related disorder
-
PSMD12 p.Glu237Gly
Uncertain significance
No assertion criteria
PSMD12-related disorder
-
PSMD12 p.Val397Leu
Uncertain significance
No assertion criteria
PSMD12-related disorder
Predictors split 24
The independent predictors disagree with each other — read with care.
-
PSMD12 p.Val71Leu
Uncertain significance
Multiple submitters
Stankiewicz-Isidor syndrome
-
PSMD12 p.Ala163Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Arg27Ser
Uncertain significance
Single submitter
Stankiewicz-Isidor syndrome
-
PSMD12 p.Asn281Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Asn399His
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Asp353Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- PSMD12 p.Cys244Ser Uncertain significance Single submitter
-
PSMD12 p.Gly238Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Gly38Arg
Uncertain significance
Single submitter
Stankiewicz-Isidor syndrome
- PSMD12 p.His236Arg Uncertain significance Single submitter
- PSMD12 p.Ile136Val Uncertain significance Single submitter
-
PSMD12 p.Leu424Phe
Uncertain significance
Single submitter
Stankiewicz-Isidor syndrome
-
PSMD12 p.Leu67Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
PSMD12 p.Leu89Phe
Likely benign
Single submitter
Inborn genetic diseases
- PSMD12 p.Lys268Thr Uncertain significance Single submitter
- PSMD12 p.Lys368Asn Uncertain significance Single submitter
-
PSMD12 p.Met378Val
Uncertain significance
Single submitter
Inborn genetic diseases
- PSMD12 p.Met436Ile Uncertain significance Single submitter
- PSMD12 p.Met60Ile Uncertain significance Single submitter
-
PSMD12 p.Thr54Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- PSMD12 p.Val340Ala Uncertain significance Single submitter
- PSMD12 p.Val358Ala Benign Single submitter
-
PSMD12 p.Val359Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- PSMD12 p.Val406Leu Uncertain significance Single submitter
All PSMD12 variants
Pathogenic 21
- p.Arg123Ter Multiple submitters Stankiewicz-Isidor syndrome
- p.Arg182Ter Multiple submitters Stankiewicz-Isidor syndrome
- p.Arg289Ter Multiple submitters PSMD12-related disorder
- p.Leu50fs Multiple submitters Stankiewicz-Isidor syndrome
- c.1162-1G>A Single submitter
- p.Arg357fs Single submitter Inborn genetic diseases
- p.Gln106Ter Single submitter
- p.Gln107Ter Single submitter Stankiewicz-Isidor syndrome
- p.Gln416fs Single submitter
- p.Gln96Ter Single submitter
- p.Glu139Ter Single submitter Inborn genetic diseases
- p.Glu313fs Single submitter Stankiewicz-Isidor syndrome
- p.Glu345Ter Single submitter Stankiewicz-Isidor syndrome
- p.Glu360Ter Single submitter Stankiewicz-Isidor syndrome
- p.Leu229fs Single submitter
- p.Leu229Ter Single submitter Stankiewicz-Isidor syndrome
- p.Pro119fs Single submitter
- p.Ser176fs Single submitter
- c.909-2A>G No assertion criteria Stankiewicz-Isidor syndrome
- p.Arg201Ter No assertion criteria Stankiewicz-Isidor syndrome
- p.Leu425Ter No assertion criteria Stankiewicz-Isidor syndrome
Pathogenic/Likely pathogenic 1
- p.Arg144Ter Multiple submitters Stankiewicz-Isidor syndrome
Likely pathogenic 13
- c.1084-1G>A Single submitter Stankiewicz-Isidor syndrome
- c.795+1G>A Single submitter intellectual disability
- p.Asn86fs Single submitter Stankiewicz-Isidor syndrome
- p.Gln189Ter Single submitter Stankiewicz-Isidor syndrome
- p.Glu168Ter Single submitter PSMD12-related disorder
- p.Lys180fs Single submitter
- p.Met375fs Single submitter PSMD12-related disorder
- p.Thr146fs Single submitter PSMD12-related disorder
- p.Trp428Ter Single submitter craniosynostosis
- p.Tyr111Ter Single submitter Stankiewicz-Isidor syndrome
- p.Tyr273fs Single submitter Stankiewicz-Isidor syndrome
- p.Ser434Ter No assertion criteria Stankiewicz-Isidor syndrome
- p.Tyr302Ter No assertion criteria
Conflicting classifications of pathogenicity 2
- p.Ala367Thr Single submitter Inborn genetic diseases ⚠
- p.Lys294Arg Single submitter Stankiewicz-Isidor syndrome ⚠
Benign 4
- c.796-3T>C Multiple submitters Stankiewicz-Isidor syndrome
- p.Ala447= Single submitter
- p.Val358Ala Single submitter ⚠
- p.Ser176= No assertion criteria PSMD12-related disorder
Likely benign 10
- p.Ala143= Multiple submitters
- c.168+11T>C Single submitter
- c.298-5T>C Single submitter
- c.510+12C>T Single submitter
- p.Leu314= Single submitter
- p.Leu384= Single submitter
- p.Leu89Phe Single submitter Inborn genetic diseases ⚠
- p.Thr151Ser Single submitter
- p.Tyr111= Single submitter
- p.Tyr174= Single submitter
Uncertain significance 106
- p.Asp339Glu Multiple submitters Stankiewicz-Isidor syndrome ⚠
- p.Lys221Thr Multiple submitters Inborn genetic diseases ⚠
- p.Pro300Ser Multiple submitters Inborn genetic diseases ⚠
- p.Thr443Met Multiple submitters Stankiewicz-Isidor syndrome ⚠
- p.Val71Leu Multiple submitters Stankiewicz-Isidor syndrome ⚠
- c.1161+3A>T Single submitter
- c.1161+4A>G Single submitter Inborn genetic diseases
- c.168+5G>A Single submitter neurodevelopmental disorder
- c.796-8T>C Single submitter Stankiewicz-Isidor syndrome
- c.909-8A>G Single submitter
- p.Ala100Val Single submitter Stankiewicz-Isidor syndrome ⚠
- p.Ala163Thr Single submitter Inborn genetic diseases ⚠
- p.Ala391Gly Single submitter ⚠
- p.Ala391Val Single submitter ⚠
- p.Arg123Gln Single submitter Inborn genetic diseases ⚠
- p.Arg144Gln Single submitter
- p.Arg27Ser Single submitter Stankiewicz-Isidor syndrome ⚠
- p.Arg372Trp Single submitter PSMD12-related disorder ⚠
- p.Arg408Thr Single submitter ⚠
- p.Arg55Cys Single submitter ⚠
- p.Arg65Cys Single submitter Inborn genetic diseases
- p.Arg94Gln Single submitter Inborn genetic diseases ⚠
- p.Arg94Trp Single submitter Inborn genetic diseases ⚠
- p.Asn228Ser Single submitter ⚠
- p.Asn281Ser Single submitter Inborn genetic diseases ⚠
- p.Asn399His Single submitter Inborn genetic diseases ⚠
- p.Asn433Ser Single submitter Inborn genetic diseases ⚠
- p.Asn454Asp Single submitter ⚠
- p.Asp198Val Single submitter ⚠
- p.Asp252Asn Single submitter ⚠
- p.Asp285His Single submitter ⚠
- p.Asp353Ala Single submitter Inborn genetic diseases ⚠
- p.Asp59Gly Single submitter ⚠
- p.Cys244Ser Single submitter ⚠
- p.Gln283Lys Single submitter Inborn genetic diseases ⚠
- p.Gln430Glu Single submitter Inborn genetic diseases ⚠
- p.Glu139Asp Single submitter ⚠
- p.Glu161Asp Single submitter Inborn genetic diseases ⚠
- p.Glu388_Ser389delinsAspPhe Single submitter Stankiewicz-Isidor syndrome
- p.Glu42Asp Single submitter Inborn genetic diseases ⚠
- p.Glu449Val Single submitter ⚠
- p.Gly157Arg Single submitter
- p.Gly238Arg Single submitter Inborn genetic diseases ⚠
- p.Gly331Ala Single submitter Inborn genetic diseases ⚠
- p.Gly38Arg Single submitter Stankiewicz-Isidor syndrome ⚠
- p.His236Arg Single submitter ⚠
- p.Ile136Val Single submitter ⚠
- p.Ile250Arg Single submitter ⚠
- p.Ile250Met Single submitter Inborn genetic diseases ⚠
- p.Ile250Val Single submitter Inborn genetic diseases ⚠
- p.Ile256Met Single submitter Inborn genetic diseases
- p.Ile290Val Single submitter Inborn genetic diseases ⚠
- p.Ile402Val Single submitter PSMD12-related disorder ⚠
- p.Ile87Val Single submitter ⚠
- p.Leu308Pro Single submitter Inborn genetic diseases ⚠
- p.Leu314Ser Single submitter ⚠
- p.Leu381Phe Single submitter PSMD12-related disorder ⚠
- p.Leu393Phe Single submitter ⚠
- p.Leu424Phe Single submitter Stankiewicz-Isidor syndrome ⚠
- p.Leu67Phe Single submitter Inborn genetic diseases ⚠
- p.Leu67Ser Single submitter ⚠
- p.Leu90Phe Single submitter
- p.Lys212Arg Single submitter Stankiewicz-Isidor syndrome ⚠
- p.Lys268Thr Single submitter ⚠
- p.Lys368Asn Single submitter ⚠
- p.Lys368Thr Single submitter Inborn genetic diseases ⚠
- p.Lys405Arg Single submitter Inborn genetic diseases ⚠
- p.Lys448Glu Single submitter Stankiewicz-Isidor syndrome ⚠
- p.Met366Val Single submitter Stankiewicz-Isidor syndrome ⚠
- p.Met375Thr Single submitter PSMD12-related disorder ⚠
- p.Met378Val Single submitter Inborn genetic diseases ⚠
- p.Met436Ile Single submitter ⚠
- p.Met436Leu Single submitter ⚠
- p.Met451Val Single submitter Stankiewicz-Isidor syndrome ⚠
- p.Met60Ile Single submitter ⚠
- p.Met60Thr Single submitter Inborn genetic diseases
- p.Met88Lys Single submitter Inborn genetic diseases
- p.Pro119Ser Single submitter Stankiewicz-Isidor syndrome ⚠
- p.Pro300Ala Single submitter ⚠
- p.Ser164Thr Single submitter Inborn genetic diseases ⚠
- p.Ser269Asn Single submitter Stankiewicz-Isidor syndrome ⚠
- p.Ser335Arg Single submitter ⚠
- p.Ser434Ile Single submitter
- p.Ser62Leu Single submitter Inborn genetic diseases ⚠
- p.Thr132Ile Single submitter ⚠
- p.Thr173Pro Single submitter ⚠
- p.Thr311Ser Single submitter ⚠
- p.Thr344Ala Single submitter ⚠
- p.Thr371Ala Single submitter
- p.Thr401Asn Single submitter
- p.Thr54Ala Single submitter Inborn genetic diseases ⚠
- p.Thr56Ala Single submitter ⚠
- p.Tyr199Asn Single submitter Inborn genetic diseases ⚠
- p.Tyr247Cys Single submitter Inborn genetic diseases
- p.Tyr273Asn Single submitter Inborn genetic diseases ⚠
- p.Val171= Single submitter Inborn genetic diseases
- p.Val340Ala Single submitter ⚠
- p.Val359Leu Single submitter Inborn genetic diseases ⚠
- p.Val386Ala Single submitter Stankiewicz-Isidor syndrome ⚠
- p.Val406Leu Single submitter ⚠
- p.Val439Phe Single submitter ⚠
- p.Val71Ala Single submitter
- p.Arg417fs No assertion criteria PSMD12-related disorder
- p.Asp323Asn No assertion criteria PSMD12-related disorder ⚠
- p.Glu237Gly No assertion criteria PSMD12-related disorder ⚠
- p.Val397Leu No assertion criteria PSMD12-related disorder ⚠