PUF60 — 307 ClinVar variants

All ClinVar germline PUF60 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 100 flagged for review →

51 Pathogenic · 9 Pathogenic/Likely pathogenic · 49 Likely pathogenic · 6 Conflicting · 3 Benign · 9 Benign/Likely benign · 66 Likely benign · 114 Uncertain significance

Full PUF60 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 100

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 3

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 4

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 58

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 35

The independent predictors disagree with each other — read with care.

All PUF60 variants

Pathogenic 51

  • p.Arg198fs Multiple submitters Inborn genetic diseases
  • p.Arg448Ter Multiple submitters PUF60-related disorder
  • p.Gln210Ter Multiple submitters 8q24.3 microdeletion syndrome
  • p.Gln91Ter Multiple submitters 8q24.3 microdeletion syndrome
  • p.Glu524Ter Multiple submitters 8q24.3 microdeletion syndrome
  • p.Met128fs Multiple submitters 8q24.3 microdeletion syndrome
  • c.208-1G>A Single submitter 8q24.3 microdeletion syndrome
  • c.510+1G>T Single submitter Inborn genetic diseases
  • c.510+2T>A Single submitter 8q24.3 microdeletion syndrome
  • p.Ala126fs Single submitter Inborn genetic diseases
  • p.Ala283fs Single submitter 8q24.3 microdeletion syndrome
  • p.Ala335fs Single submitter 8q24.3 microdeletion syndrome
  • p.Ala357fs Single submitter 8q24.3 microdeletion syndrome
  • p.Arg130Cys Single submitter
  • p.Arg204fs Single submitter Inborn genetic diseases
  • p.Asp239fs Single submitter
  • p.Gln212Ter Single submitter
  • p.Gln278Ter Single submitter PUF60-related disorder
  • p.Gln336Ter Single submitter 8q24.3 microdeletion syndrome
  • p.Gln375Ter Single submitter intellectual disability-cardiac anomalies-short stature-joint laxity syndrome
  • p.Gln437Ter Single submitter 8q24.3 microdeletion syndrome
  • p.Gln453Ter Single submitter
  • p.Gln503fs Single submitter Inborn genetic diseases
  • p.Glu188Ter Single submitter PUF60-related disorder
  • p.Ile136fs Single submitter
  • p.Leu364fs Single submitter 8q24.3 microdeletion syndrome
  • p.Lys168fs Single submitter 8q24.3 microdeletion syndrome
  • p.Lys332fs Single submitter
  • p.Lys72_Tyr73insTer Single submitter 8q24.3 microdeletion syndrome
  • p.Met287fs Single submitter 8q24.3 microdeletion syndrome
  • p.Phe225fs Single submitter 8q24.3 microdeletion syndrome
  • p.Pro385fs Single submitter 8q24.3 microdeletion syndrome
  • p.Ser18fs Single submitter
  • p.Ser206fs Single submitter 8q24.3 microdeletion syndrome
  • p.Ser238fs Single submitter 8q24.3 microdeletion syndrome
  • p.Ser285fs Single submitter 8q24.3 microdeletion syndrome
  • p.Ser396Ter Single submitter
  • p.Ser558fs Single submitter
  • p.Thr166fs Single submitter Inborn genetic diseases
  • p.Trp162Ter Single submitter 8q24.3 microdeletion syndrome
  • p.Tyr274Ter Single submitter 8q24.3 microdeletion syndrome
  • p.Val233fs Single submitter 8q24.3 microdeletion syndrome
  • p.Val299fs Single submitter
  • p.Val483fs Single submitter Inborn genetic diseases
  • p.Asp553Gly No assertion criteria intellectual disability-cardiac anomalies-short stature-joint laxity syndrome ⚠
  • p.Gln212fs No assertion criteria 8q24.3 microdeletion syndrome
  • p.Gly250fs No assertion criteria 8q24.3 microdeletion syndrome
  • p.Leu95fs No assertion criteria 8q24.3 microdeletion syndrome
  • p.Lys301Ter No assertion criteria 8q24.3 microdeletion syndrome
  • p.Lys69fs No assertion criteria intellectual disability-cardiac anomalies-short stature-joint laxity syndrome
  • p.Val483Ala No assertion criteria 8q24.3 microdeletion syndrome

Pathogenic/Likely pathogenic 9

Likely pathogenic 49

Conflicting classifications of pathogenicity 6

Benign 3

Benign/Likely benign 9

Likely benign 66

Uncertain significance 114