RARS2 — 1009 ClinVar variants

All ClinVar germline RARS2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 201 flagged for review →

52 Pathogenic · 68 Pathogenic/Likely pathogenic · 112 Likely pathogenic · 47 Conflicting · 45 Benign · 16 Benign/Likely benign · 446 Likely benign · 223 Uncertain significance

Full RARS2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 201

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 9

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 21

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 137

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 34

The independent predictors disagree with each other — read with care.

All RARS2 variants

Pathogenic 52

Pathogenic/Likely pathogenic 68

  • c.110+5A>G Multiple submitters pontocerebellar hypoplasia type 6
  • c.1237+1G>A Multiple submitters pontocerebellar hypoplasia type 6
  • c.1650+1del Multiple submitters pontocerebellar hypoplasia type 6
  • c.1650+1G>T Multiple submitters pontocerebellar hypoplasia type 6
  • c.1651-2A>G Multiple submitters pontocerebellar hypoplasia type 6
  • c.297+1G>C Multiple submitters pontocerebellar hypoplasia
  • c.297+1G>T Multiple submitters pontocerebellar hypoplasia type 6
  • c.297+2T>G Multiple submitters pontocerebellar hypoplasia type 6
  • c.613-3927C>T Multiple submitters pontocerebellar hypoplasia
  • c.879-1G>C Multiple submitters pontocerebellar hypoplasia type 6
  • p.Arg146fs Multiple submitters pontocerebellar hypoplasia
  • p.Arg229Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Arg254fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Arg258Cys Multiple submitters pontocerebellar hypoplasia type 6 ⚠
  • p.Arg315Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Arg333Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Arg386Ter Multiple submitters Inborn genetic diseases
  • p.Arg469His Multiple submitters pontocerebellar hypoplasia
  • p.Arg519fs Multiple submitters pontocerebellar hypoplasia
  • p.Arg94fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Asn93fs Multiple submitters RARS2-related disorder
  • p.Asp234fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Asp300fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Asp515Gly Multiple submitters pontocerebellar hypoplasia ⚠
  • p.Asp53_Asn54insTer Multiple submitters pontocerebellar hypoplasia type 6
  • p.Cys3Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Gln12Arg Multiple submitters Inborn genetic diseases ⚠
  • p.Gln12Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Gln277fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Gln277Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Gln381Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Gln43Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Gln464Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Gln494fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Gln85Ter Multiple submitters
  • p.Glu159fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Glu212fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Glu416Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Glu475Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Glu95fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Gly365_Tyr366insTer Multiple submitters pontocerebellar hypoplasia type 6
  • p.His353fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Ile310fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Leu24fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Leu280fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Leu280Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Leu283Gln Multiple submitters pontocerebellar hypoplasia
  • p.Leu440Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Leu528fs Multiple submitters RARS2-related disorder
  • p.Lys158del Multiple submitters pontocerebellar hypoplasia
  • p.Lys352fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Lys438Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Met1Arg Multiple submitters pontocerebellar hypoplasia
  • p.Met1Leu Multiple submitters pontocerebellar hypoplasia type 6
  • p.Met1Thr Multiple submitters pontocerebellar hypoplasia type 6
  • p.Met1Val Multiple submitters Inborn genetic diseases
  • p.Phe140Cys Multiple submitters Inborn genetic diseases
  • p.Phe153fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Phe447fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Phe477fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Ser239Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Ser57Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Thr538fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Trp241fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Tyr322fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Val461fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Val522Ile Multiple submitters RARS2-related disorder ⚠
  • p.Val78fs Multiple submitters pontocerebellar hypoplasia type 6

Likely pathogenic 112

  • c.1035+2T>G Multiple submitters pontocerebellar hypoplasia type 6
  • c.111-2A>G Multiple submitters pontocerebellar hypoplasia type 6
  • c.1113-2A>G Multiple submitters pontocerebellar hypoplasia type 6
  • c.1237+1G>C Multiple submitters pontocerebellar hypoplasia type 6
  • c.1238-2A>G Multiple submitters pontocerebellar hypoplasia type 6
  • c.1415+1G>A Multiple submitters pontocerebellar hypoplasia type 6
  • c.1415+1G>T Multiple submitters pontocerebellar hypoplasia type 6
  • c.1415+2T>C Multiple submitters pontocerebellar hypoplasia type 6
  • c.1511+1G>A Multiple submitters pontocerebellar hypoplasia type 6
  • c.1512-1G>A Multiple submitters pontocerebellar hypoplasia type 6
  • c.1586+1G>T Multiple submitters pontocerebellar hypoplasia type 6
  • c.1586+3A>T Multiple submitters pontocerebellar hypoplasia type 6
  • c.36+1G>A Multiple submitters pontocerebellar hypoplasia type 6
  • c.36+1G>T Multiple submitters pontocerebellar hypoplasia type 6
  • c.36+2T>A Multiple submitters pontocerebellar hypoplasia type 6
  • c.395+1_395+9del Multiple submitters pontocerebellar hypoplasia type 6
  • c.395+1G>A Multiple submitters pontocerebellar hypoplasia type 6
  • c.536-1G>A Multiple submitters pontocerebellar hypoplasia type 6
  • c.771+2T>G Multiple submitters pontocerebellar hypoplasia type 6
  • c.772-1G>A Multiple submitters pontocerebellar hypoplasia type 6
  • c.878+5G>T Multiple submitters pontocerebellar hypoplasia type 6
  • c.879-2del Multiple submitters pontocerebellar hypoplasia type 6
  • c.974+1G>A Multiple submitters pontocerebellar hypoplasia type 6
  • p.Ala10Val Multiple submitters pontocerebellar hypoplasia type 6 ⚠
  • p.Arg15fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Arg315Gln Multiple submitters pontocerebellar hypoplasia type 6 ⚠
  • p.Arg6Cys Multiple submitters pontocerebellar hypoplasia type 6
  • p.Asp543fs Multiple submitters pontocerebellar hypoplasia
  • p.Gln491Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Gln517Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.His530Tyr Multiple submitters pontocerebellar hypoplasia type 6 ⚠
  • p.Ile127fs Multiple submitters pontocerebellar hypoplasia type 6
  • p.Leu24Ter Multiple submitters pontocerebellar hypoplasia type 6
  • p.Met404Val Multiple submitters pontocerebellar hypoplasia type 6 ⚠
  • c.1035+1G>T Single submitter
  • c.1036-1G>A Single submitter pontocerebellar hypoplasia type 6
  • c.1037_1040dup Single submitter pontocerebellar hypoplasia type 6
  • c.110+2T>G Single submitter pontocerebellar hypoplasia type 6
  • c.1112+2T>A Single submitter
  • c.1113-21A>C Single submitter
  • c.1238-28T>G Single submitter pontocerebellar hypoplasia type 6
  • c.1305+2T>C Single submitter pontocerebellar hypoplasia type 6
  • c.1306-1G>A Single submitter pontocerebellar hypoplasia type 6
  • c.1416-1G>A Single submitter
  • c.1416-1G>C Single submitter pontocerebellar hypoplasia type 6
  • c.1416-2A>C Single submitter pontocerebellar hypoplasia type 6
  • c.1511+2T>C Single submitter
  • c.1512-2A>C Single submitter
  • c.1586+1G>A Single submitter
  • c.1587-1G>C Single submitter
  • c.214-2A>G Single submitter pontocerebellar hypoplasia type 6
  • c.37-12_44del Single submitter
  • c.395+2T>C Single submitter
  • c.396-1G>A Single submitter
  • c.396-2A>G Single submitter
  • c.451+1G>A Single submitter pontocerebellar hypoplasia type 6
  • c.451+4A>G Single submitter
  • c.452-1G>A Single submitter pontocerebellar hypoplasia type 6
  • c.535+1G>C Single submitter
  • c.535+2T>G Single submitter pontocerebellar hypoplasia type 6
  • c.610_612+2del Single submitter pontocerebellar hypoplasia type 6
  • c.612+2T>A Single submitter
  • c.612+2T>G Single submitter pontocerebellar hypoplasia type 6
  • c.613-1G>A Single submitter
  • c.613-2A>C Single submitter pontocerebellar hypoplasia type 6
  • c.771+1G>A Single submitter
  • c.771+1G>T Single submitter
  • c.879-2A>G Single submitter pontocerebellar hypoplasia type 6
  • p.Ala2fs Single submitter pontocerebellar hypoplasia type 6
  • p.Ala369fs Single submitter RARS2-related disorder
  • p.Ala409_Ser410insTer Single submitter pontocerebellar hypoplasia type 6
  • p.Ala409fs Single submitter pontocerebellar hypoplasia type 6
  • p.Ala8Gly Single submitter pontocerebellar hypoplasia type 6 ⚠
  • p.Arg469fs Single submitter pontocerebellar hypoplasia type 6
  • p.Asn18fs Single submitter pontocerebellar hypoplasia type 6
  • p.Asn419fs Single submitter pontocerebellar hypoplasia type 6
  • p.Asp41fs Single submitter pontocerebellar hypoplasia type 6
  • p.Asp458fs Single submitter pontocerebellar hypoplasia type 6
  • p.Asp53fs Single submitter pontocerebellar hypoplasia type 6
  • p.Gln124fs Single submitter pontocerebellar hypoplasia type 6
  • p.Gln177Ter Single submitter pontocerebellar hypoplasia type 6
  • p.Gln200Ter Single submitter pontocerebellar hypoplasia type 6
  • p.Gln350Ter Single submitter pontocerebellar hypoplasia type 6
  • p.Gln517fs Single submitter pontocerebellar hypoplasia type 6
  • p.Glu159Ter Single submitter pontocerebellar hypoplasia type 6
  • p.Glu474fs Single submitter pontocerebellar hypoplasia type 6
  • p.Glu475fs Single submitter pontocerebellar hypoplasia type 6
  • p.Gly109fs Single submitter
  • p.Gly365Ter Single submitter pontocerebellar hypoplasia type 6
  • p.Gly439fs Single submitter pontocerebellar hypoplasia type 6
  • p.Ile150Thr Single submitter pontocerebellar hypoplasia type 6 ⚠
  • p.Leu247Ter Single submitter pontocerebellar hypoplasia type 6
  • p.Leu321Phe Single submitter pontocerebellar hypoplasia type 6
  • p.Leu442fs Single submitter pontocerebellar hypoplasia type 6
  • p.Leu539Pro Single submitter
  • p.Lys111fs Single submitter pontocerebellar hypoplasia type 6
  • p.Lys418fs Single submitter pontocerebellar hypoplasia type 6
  • p.Lys511fs Single submitter pontocerebellar hypoplasia type 6
  • p.Lys537Ter Single submitter pontocerebellar hypoplasia type 6
  • p.Pro20fs Single submitter pontocerebellar hypoplasia type 6
  • p.Pro59fs Single submitter pontocerebellar hypoplasia type 6
  • p.Ser116delinsThrTyrTer Single submitter pontocerebellar hypoplasia type 6
  • p.Ser116fs Single submitter pontocerebellar hypoplasia type 6
  • p.Ser497Ter Single submitter pontocerebellar hypoplasia
  • p.Ser512Ter Single submitter pontocerebellar hypoplasia type 6
  • p.Ser523fs Single submitter pontocerebellar hypoplasia type 6
  • p.Trp241Arg Single submitter
  • p.Tyr206fs Single submitter pontocerebellar hypoplasia type 6
  • p.Tyr266Ter Single submitter pontocerebellar hypoplasia type 6
  • p.Tyr445Cys Single submitter ⚠
  • p.Val380fs Single submitter pontocerebellar hypoplasia type 6
  • p.Val508fs Single submitter pontocerebellar hypoplasia type 6

Conflicting classifications of pathogenicity 47

Benign 45

Benign/Likely benign 16

  • c.111-19T>G Multiple submitters pontocerebellar hypoplasia type 6
  • c.111-20G>A Multiple submitters
  • c.1305+18C>T Multiple submitters pontocerebellar hypoplasia type 6
  • c.396-13A>T Multiple submitters
  • c.452-22TA[2] Multiple submitters
  • c.878+17A>G Multiple submitters
  • c.879-6T>C Multiple submitters pontocerebellar hypoplasia type 6
  • c.-13C>T Multiple submitters pontocerebellar hypoplasia type 6
  • c.-8A>C Multiple submitters pontocerebellar hypoplasia type 6
  • p.Gln242= Multiple submitters pontocerebellar hypoplasia type 6
  • p.Ile331Val Multiple submitters pontocerebellar hypoplasia type 6
  • p.Leu202= Multiple submitters pontocerebellar hypoplasia type 6
  • p.Leu470= Multiple submitters pontocerebellar hypoplasia type 6
  • p.Lys291Arg Multiple submitters pontocerebellar hypoplasia type 6
  • p.Lys568= Multiple submitters pontocerebellar hypoplasia type 6
  • p.Pro21= Multiple submitters pontocerebellar hypoplasia type 6

Likely benign 446

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 223