RAX2 — 311 ClinVar variants

All ClinVar germline RAX2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 136 flagged for review →

7 Pathogenic · 1 Pathogenic/Likely pathogenic · 3 Likely pathogenic · 19 Conflicting · 19 Benign · 11 Benign/Likely benign · 85 Likely benign · 166 Uncertain significance

Full RAX2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 136

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors lean, ClinVar uncertain 118

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

All RAX2 variants

Pathogenic 7

Pathogenic/Likely pathogenic 1

  • p.Ala156fs Multiple submitters RAX2-related disorder

Likely pathogenic 3

  • p.Pro52Arg Multiple submitters RAX2-related disorder
  • c.216+1G>A Single submitter RAX2-related disorder
  • c.-11A>G Single submitter RAX2-related disorder

Conflicting classifications of pathogenicity 19

Benign 19

  • c.217-8C>T Multiple submitters cone-rod dystrophy 11
  • c.*1149C>T Multiple submitters cone-rod dystrophy 11
  • c.*1366C>G Multiple submitters cone-rod dystrophy 11
  • c.*381A>G Multiple submitters cone-rod dystrophy 11
  • c.*720G>A Multiple submitters cone-rod dystrophy 11
  • c.*785G>A Multiple submitters cone-rod dystrophy 11
  • c.*866C>T Multiple submitters cone-rod dystrophy 11
  • p.Gly15= Multiple submitters age related macular degeneration 6
  • p.Pro52Leu Multiple submitters age related macular degeneration 6
  • c.216+15del Single submitter
  • c.216+15dup Single submitter
  • c.-140G>A Single submitter
  • c.*1324A>G Single submitter cone-rod dystrophy 11
  • c.*647T>C Single submitter cone-rod dystrophy 11
  • c.*680G>A Single submitter cone-rod dystrophy 11
  • c.*689C>T Single submitter cone-rod dystrophy 11
  • c.*902G>T Single submitter cone-rod dystrophy 11
  • c.-33T>C No assertion criteria RAX2-related disorder
  • c.-45G>A No assertion criteria RAX2-related disorder

Benign/Likely benign 11

  • c.217-10C>T Multiple submitters cone-rod dystrophy 11
  • c.-281G>A Multiple submitters cone-rod dystrophy 11
  • c.*1169G>A Multiple submitters cone-rod dystrophy 11
  • c.*191C>T Multiple submitters cone-rod dystrophy 11
  • c.*45C>T Multiple submitters cone-rod dystrophy 11
  • p.Ala94= Multiple submitters cone-rod dystrophy 11
  • p.Ser115= Multiple submitters
  • c.-270C>T Single submitter cone-rod dystrophy 11
  • c.-316G>A Single submitter age related macular degeneration 6
  • c.*1054C>T Single submitter cone-rod dystrophy 11
  • c.*679C>T Single submitter cone-rod dystrophy 11

Likely benign 85

Uncertain significance 166