RBFOX1 — 437 ClinVar variants

All ClinVar germline RBFOX1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 147 flagged for review →

3 Likely pathogenic · 3 Conflicting · 13 Benign · 2 Benign/Likely benign · 195 Likely benign · 221 Uncertain significance

Full RBFOX1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 147

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors lean, ClinVar uncertain 107

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 40

The independent predictors disagree with each other — read with care.

All RBFOX1 variants

Likely pathogenic 3

Conflicting classifications of pathogenicity 3

  • p.Pro11His Single submitter Inborn genetic diseases
  • p.Pro19Arg Single submitter idiopathic generalized epilepsy
  • p.Ser4Cys Single submitter idiopathic generalized epilepsy

Benign 13

  • c.758-4G>T Multiple submitters idiopathic generalized epilepsy
  • c.931-19A>G Multiple submitters idiopathic generalized epilepsy
  • c.-64+166491C>A Multiple submitters idiopathic generalized epilepsy
  • p.Thr42= Multiple submitters idiopathic generalized epilepsy
  • c.270+10C>G Single submitter idiopathic generalized epilepsy
  • c.28-11del Single submitter idiopathic generalized epilepsy
  • c.758-5C>T Single submitter idiopathic generalized epilepsy
  • c.-126-6_-126-4del Single submitter
  • p.Glu236= Single submitter idiopathic generalized epilepsy
  • p.Pro19= Single submitter idiopathic generalized epilepsy
  • p.Pro24Ser Single submitter idiopathic generalized epilepsy
  • p.Pro293= Single submitter idiopathic generalized epilepsy
  • p.Thr88= Single submitter idiopathic generalized epilepsy

Benign/Likely benign 2

  • p.Pro32= Multiple submitters idiopathic generalized epilepsy
  • p.Pro46His Multiple submitters idiopathic generalized epilepsy

Likely benign 195

  • c.677-20TC[5] Multiple submitters idiopathic generalized epilepsy
  • c.995+19G>C Multiple submitters idiopathic generalized epilepsy
  • c.-229C>G Multiple submitters
  • p.Ala17= Multiple submitters idiopathic generalized epilepsy
  • p.Ala265= Multiple submitters idiopathic generalized epilepsy
  • p.Ala3= Multiple submitters idiopathic generalized epilepsy
  • p.Leu382= Multiple submitters Inborn genetic diseases
  • p.Pro59Ser Multiple submitters idiopathic generalized epilepsy
  • c.27+10C>T Single submitter
  • c.270+10C>T Single submitter idiopathic generalized epilepsy
  • c.270+11G>A Single submitter idiopathic generalized epilepsy
  • c.270+11G>T Single submitter idiopathic generalized epilepsy
  • c.270+19_270+22dup Single submitter idiopathic generalized epilepsy
  • c.270+20A>G Single submitter idiopathic generalized epilepsy
  • c.270+7G>T Single submitter idiopathic generalized epilepsy
  • c.270+8G>A Single submitter idiopathic generalized epilepsy
  • c.28-10G>T Single submitter idiopathic generalized epilepsy
  • c.28-13T>C Single submitter idiopathic generalized epilepsy
  • c.28-185041C>A Single submitter idiopathic generalized epilepsy
  • c.28-185041C>T Single submitter idiopathic generalized epilepsy
  • c.28-185043_28-185040del Single submitter idiopathic generalized epilepsy
  • c.28-185043T>C Single submitter idiopathic generalized epilepsy
  • c.28-185044C>G Single submitter idiopathic generalized epilepsy
  • c.28-185047C>T Single submitter idiopathic generalized epilepsy
  • c.28-185051A>T Single submitter idiopathic generalized epilepsy
  • c.28-20G>T Single submitter idiopathic generalized epilepsy
  • c.28-7847G>C Single submitter
  • c.28-7856A>G Single submitter
  • c.28-7863A>G Single submitter
  • c.340-9_340-8del Single submitter
  • c.415-12A>G Single submitter idiopathic generalized epilepsy
  • c.415-14C>A Single submitter idiopathic generalized epilepsy
  • c.415-14C>T Single submitter idiopathic generalized epilepsy
  • c.415-16T>C Single submitter idiopathic generalized epilepsy
  • c.415-17T>C Single submitter idiopathic generalized epilepsy
  • c.415-19T>C Single submitter idiopathic generalized epilepsy
  • c.415-20A>G Single submitter idiopathic generalized epilepsy
  • c.415-20A>T Single submitter idiopathic generalized epilepsy
  • c.468+10_468+11del Single submitter idiopathic generalized epilepsy
  • c.468+18C>G Single submitter idiopathic generalized epilepsy
  • c.469-13C>T Single submitter idiopathic generalized epilepsy
  • c.469-17C>T Single submitter idiopathic generalized epilepsy
  • c.469-8G>A Single submitter idiopathic generalized epilepsy
  • c.562-12C>T Single submitter idiopathic generalized epilepsy
  • c.562-15T>A Single submitter idiopathic generalized epilepsy
  • c.562-17G>C Single submitter idiopathic generalized epilepsy
  • c.562-20T>G Single submitter idiopathic generalized epilepsy
  • c.562-4A>T Single submitter idiopathic generalized epilepsy
  • c.562-5C>T Single submitter idiopathic generalized epilepsy
  • c.562-8G>A Single submitter idiopathic generalized epilepsy
  • c.562-8G>T Single submitter idiopathic generalized epilepsy
  • c.562-9T>C Single submitter idiopathic generalized epilepsy
  • c.622+10G>A Single submitter idiopathic generalized epilepsy
  • c.622+11A>T Single submitter idiopathic generalized epilepsy
  • c.622+12T>C Single submitter
  • c.623-16G>T Single submitter idiopathic generalized epilepsy
  • c.676+12C>G Single submitter idiopathic generalized epilepsy
  • c.676+7_676+8del Single submitter idiopathic generalized epilepsy
  • c.676+8G>A Single submitter
  • c.677-13C>T Single submitter idiopathic generalized epilepsy
  • c.677-4G>A Single submitter idiopathic generalized epilepsy
  • c.677-4G>T Single submitter idiopathic generalized epilepsy
  • c.677-5C>T Single submitter idiopathic generalized epilepsy
  • c.677-8T>G Single submitter idiopathic generalized epilepsy
  • c.757+14C>G Single submitter idiopathic generalized epilepsy
  • c.757+14C>T Single submitter idiopathic generalized epilepsy
  • c.757+15G>A Single submitter idiopathic generalized epilepsy
  • c.757+19C>G Single submitter idiopathic generalized epilepsy
  • c.757+7C>T Single submitter idiopathic generalized epilepsy
  • c.758-10T>C Single submitter idiopathic generalized epilepsy
  • c.758-12C>G Single submitter idiopathic generalized epilepsy
  • c.758-14_758-10del Single submitter idiopathic generalized epilepsy
  • c.758-15_758-14insTCCC Single submitter idiopathic generalized epilepsy
  • c.758-18_758-17insGT Single submitter idiopathic generalized epilepsy
  • c.758-19_758-18insGC Single submitter idiopathic generalized epilepsy
  • c.758-4G>A Single submitter idiopathic generalized epilepsy
  • c.758-5_758-4delinsTT Single submitter idiopathic generalized epilepsy
  • c.758-5C>G Single submitter idiopathic generalized epilepsy
  • c.758-6C>T Single submitter idiopathic generalized epilepsy
  • c.758-9G>T Single submitter idiopathic generalized epilepsy
  • c.890+15C>G Single submitter idiopathic generalized epilepsy
  • c.890+15C>T Single submitter idiopathic generalized epilepsy
  • c.890+17C>T Single submitter idiopathic generalized epilepsy
  • c.890+20G>T Single submitter idiopathic generalized epilepsy
  • c.890+8G>C Single submitter idiopathic generalized epilepsy
  • c.890+9G>A Single submitter
  • c.930+17G>C Single submitter
  • c.931-12C>T Single submitter idiopathic generalized epilepsy
  • c.931-15C>G Single submitter
  • c.931-18T>C Single submitter idiopathic generalized epilepsy
  • c.931-5155G>A Single submitter idiopathic generalized epilepsy
  • c.931-5156T>C Single submitter
  • c.931-5157G>C Single submitter idiopathic generalized epilepsy
  • c.931-5159T>C Single submitter idiopathic generalized epilepsy
  • c.931-5160C>A Single submitter idiopathic generalized epilepsy
  • c.931-5161A>G Single submitter idiopathic generalized epilepsy
  • c.931-5163C>G Single submitter idiopathic generalized epilepsy
  • c.931-5163C>T Single submitter idiopathic generalized epilepsy
  • c.931-5221A>G Single submitter idiopathic generalized epilepsy
  • c.931-5224C>T Single submitter idiopathic generalized epilepsy
  • c.931-5226T>G Single submitter idiopathic generalized epilepsy
  • c.931-5229G>C Single submitter
  • c.931-6T>C Single submitter idiopathic generalized epilepsy
  • c.931-8T>C Single submitter idiopathic generalized epilepsy
  • c.931-9G>C Single submitter idiopathic generalized epilepsy
  • c.995+14T>A Single submitter idiopathic generalized epilepsy
  • c.995+16C>T Single submitter idiopathic generalized epilepsy
  • c.995+9C>T Single submitter idiopathic generalized epilepsy
  • p.Ala15= Single submitter idiopathic generalized epilepsy
  • p.Ala167= Single submitter idiopathic generalized epilepsy
  • p.Ala169= Single submitter idiopathic generalized epilepsy
  • p.Ala191= Single submitter idiopathic generalized epilepsy
  • p.Ala21= Single submitter idiopathic generalized epilepsy
  • p.Ala263= Single submitter idiopathic generalized epilepsy
  • p.Ala264= Single submitter idiopathic generalized epilepsy
  • p.Ala270= Single submitter idiopathic generalized epilepsy
  • p.Ala285= Single submitter idiopathic generalized epilepsy
  • p.Ala286= Single submitter idiopathic generalized epilepsy
  • p.Ala326= Single submitter idiopathic generalized epilepsy
  • p.Ala328= Single submitter idiopathic generalized epilepsy
  • p.Ala43= Single submitter idiopathic generalized epilepsy
  • p.Ala78= Single submitter idiopathic generalized epilepsy
  • p.Arg268= Single submitter idiopathic generalized epilepsy
  • p.Arg273= Single submitter idiopathic generalized epilepsy
  • p.Arg275= Single submitter idiopathic generalized epilepsy
  • p.Arg277= Single submitter idiopathic generalized epilepsy
  • p.Asn35= Single submitter idiopathic generalized epilepsy
  • p.Gln29= Single submitter idiopathic generalized epilepsy
  • p.Gln70= Single submitter idiopathic generalized epilepsy
  • p.Glu152= Single submitter idiopathic generalized epilepsy
  • p.Glu74Gln Single submitter idiopathic generalized epilepsy
  • p.Gly13= Single submitter idiopathic generalized epilepsy
  • p.Gly274= Single submitter idiopathic generalized epilepsy
  • p.Gly311= Single submitter idiopathic generalized epilepsy
  • p.Gly6= Single submitter idiopathic generalized epilepsy
  • p.His177= Single submitter idiopathic generalized epilepsy
  • p.Ile17= Single submitter idiopathic generalized epilepsy
  • p.Ile292= Single submitter idiopathic generalized epilepsy
  • p.Leu229= Single submitter idiopathic generalized epilepsy
  • p.Leu272= Single submitter idiopathic generalized epilepsy
  • p.Leu329= Single submitter idiopathic generalized epilepsy
  • p.Leu363= Single submitter idiopathic generalized epilepsy
  • p.Leu63= Single submitter idiopathic generalized epilepsy
  • p.Leu8= Single submitter idiopathic generalized epilepsy
  • p.Leu9= Single submitter idiopathic generalized epilepsy
  • p.Pro213= Single submitter idiopathic generalized epilepsy
  • p.Pro24= Single submitter idiopathic generalized epilepsy
  • p.Pro25= Single submitter idiopathic generalized epilepsy
  • p.Pro257= Single submitter idiopathic generalized epilepsy
  • p.Pro289= Single submitter idiopathic generalized epilepsy
  • p.Pro290= Single submitter idiopathic generalized epilepsy
  • p.Pro291= Single submitter idiopathic generalized epilepsy
  • p.Pro323= Single submitter idiopathic generalized epilepsy
  • p.Pro33= Single submitter idiopathic generalized epilepsy
  • p.Pro38= Single submitter idiopathic generalized epilepsy
  • p.Pro44= Single submitter idiopathic generalized epilepsy
  • p.Pro46= Single submitter idiopathic generalized epilepsy
  • p.Pro48= Single submitter idiopathic generalized epilepsy
  • p.Pro48Ser Single submitter idiopathic generalized epilepsy
  • p.Pro59= Single submitter idiopathic generalized epilepsy
  • p.Pro67= Single submitter idiopathic generalized epilepsy
  • p.Pro68= Single submitter idiopathic generalized epilepsy
  • p.Pro77= Single submitter idiopathic generalized epilepsy
  • p.Ser146= Single submitter
  • p.Ser239= Single submitter idiopathic generalized epilepsy
  • p.Ser251= Single submitter idiopathic generalized epilepsy
  • p.Ser73= Single submitter idiopathic generalized epilepsy
  • p.Ser81= Single submitter idiopathic generalized epilepsy
  • p.Ter398= Single submitter idiopathic generalized epilepsy
  • p.Thr179= Single submitter idiopathic generalized epilepsy
  • p.Thr192= Single submitter idiopathic generalized epilepsy
  • p.Thr20= Single submitter idiopathic generalized epilepsy
  • p.Thr201= Single submitter idiopathic generalized epilepsy
  • p.Thr206= Single submitter idiopathic generalized epilepsy
  • p.Thr227= Single submitter idiopathic generalized epilepsy
  • p.Thr262= Single submitter idiopathic generalized epilepsy
  • p.Thr57= Single submitter idiopathic generalized epilepsy
  • p.Thr62= Single submitter idiopathic generalized epilepsy
  • p.Thr80= Single submitter idiopathic generalized epilepsy
  • p.Thr84= Single submitter idiopathic generalized epilepsy
  • p.Tyr12= Single submitter idiopathic generalized epilepsy
  • p.Tyr205= Single submitter idiopathic generalized epilepsy
  • p.Tyr23= Single submitter idiopathic generalized epilepsy
  • p.Tyr249= Single submitter idiopathic generalized epilepsy
  • p.Tyr267= Single submitter idiopathic generalized epilepsy
  • p.Tyr295= Single submitter idiopathic generalized epilepsy
  • p.Tyr305= Single submitter
  • p.Tyr313= Single submitter idiopathic generalized epilepsy
  • p.Tyr318= Single submitter idiopathic generalized epilepsy
  • p.Val18= Single submitter idiopathic generalized epilepsy
  • p.Val181= Single submitter idiopathic generalized epilepsy
  • p.Val195= Single submitter idiopathic generalized epilepsy
  • p.Val319= Single submitter idiopathic generalized epilepsy
  • c.-126-6C>T No assertion criteria RBFOX1-related disorder
  • c.-22C>T No assertion criteria RBFOX1-related disorder

Uncertain significance 221