RBFOX3 — 322 ClinVar variants

All ClinVar germline RBFOX3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 124 flagged for review →

1 Pathogenic · 4 Conflicting · 13 Benign · 158 Likely benign · 146 Uncertain significance

Full RBFOX3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 124

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 4

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 72

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 48

The independent predictors disagree with each other — read with care.

All RBFOX3 variants

Pathogenic 1

  • p.Tyr334Ter No assertion criteria self-limited epilepsy with centrotemporal spikes

Conflicting classifications of pathogenicity 4

Benign 13

  • c.568+17C>T Multiple submitters idiopathic generalized epilepsy
  • c.622+6A>G Multiple submitters idiopathic generalized epilepsy
  • p.Pro107= Multiple submitters idiopathic generalized epilepsy
  • p.Tyr22= Multiple submitters idiopathic generalized epilepsy
  • c.360+16C>T Single submitter idiopathic generalized epilepsy
  • c.622+3dup Single submitter idiopathic generalized epilepsy
  • c.623-4G>T Single submitter idiopathic generalized epilepsy
  • c.936+15G>A Single submitter idiopathic generalized epilepsy
  • c.998+13dup Single submitter idiopathic generalized epilepsy
  • c.998+9G>T Single submitter idiopathic generalized epilepsy
  • p.Pro214His Single submitter idiopathic generalized epilepsy ⚠
  • p.Pro4Thr Single submitter idiopathic generalized epilepsy
  • p.Tyr320= Single submitter idiopathic generalized epilepsy

Likely benign 158

  • c.222+15G>A Multiple submitters idiopathic generalized epilepsy
  • p.Ile247= Multiple submitters idiopathic generalized epilepsy
  • p.Phe145= Multiple submitters idiopathic generalized epilepsy
  • p.Thr183Met Multiple submitters idiopathic generalized epilepsy
  • c.1077+13G>A Single submitter idiopathic generalized epilepsy
  • c.1077+16C>T Single submitter idiopathic generalized epilepsy
  • c.1077+17C>T Single submitter idiopathic generalized epilepsy
  • c.1077+18G>A Single submitter idiopathic generalized epilepsy
  • c.1077+9C>A Single submitter idiopathic generalized epilepsy
  • c.1078-12T>A Single submitter idiopathic generalized epilepsy
  • c.222+11C>T Single submitter idiopathic generalized epilepsy
  • c.222+13A>G Single submitter idiopathic generalized epilepsy
  • c.222+14C>T Single submitter idiopathic generalized epilepsy
  • c.223-17C>T Single submitter idiopathic generalized epilepsy
  • c.223-18C>T Single submitter idiopathic generalized epilepsy
  • c.223-9del Single submitter idiopathic generalized epilepsy
  • c.360+10C>T Single submitter idiopathic generalized epilepsy
  • c.360+11G>A Single submitter idiopathic generalized epilepsy
  • c.360+12C>T Single submitter idiopathic generalized epilepsy
  • c.360+13G>A Single submitter idiopathic generalized epilepsy
  • c.360+18C>T Single submitter idiopathic generalized epilepsy
  • c.361-10del Single submitter idiopathic generalized epilepsy
  • c.361-18_361-17del Single submitter idiopathic generalized epilepsy
  • c.361-20C>G Single submitter idiopathic generalized epilepsy
  • c.361-8C>T Single submitter idiopathic generalized epilepsy
  • c.414+12A>C Single submitter idiopathic generalized epilepsy
  • c.414+13C>T Single submitter idiopathic generalized epilepsy
  • c.414+14G>A Single submitter idiopathic generalized epilepsy
  • c.414+17G>A Single submitter idiopathic generalized epilepsy
  • c.414+9C>T Single submitter idiopathic generalized epilepsy
  • c.415-15C>G Single submitter idiopathic generalized epilepsy
  • c.415-17C>T Single submitter idiopathic generalized epilepsy
  • c.415-4A>G Single submitter idiopathic generalized epilepsy
  • c.415-9T>C Single submitter idiopathic generalized epilepsy
  • c.508-25TC[3] Single submitter idiopathic generalized epilepsy
  • c.508-7dup Single submitter idiopathic generalized epilepsy
  • c.568+13G>T Single submitter idiopathic generalized epilepsy
  • c.568+15C>G Single submitter idiopathic generalized epilepsy
  • c.568+16_568+17insT Single submitter idiopathic generalized epilepsy
  • c.568+16C>A Single submitter idiopathic generalized epilepsy
  • c.568+18C>T Single submitter idiopathic generalized epilepsy
  • c.568+7G>A Single submitter idiopathic generalized epilepsy
  • c.568+8G>T Single submitter idiopathic generalized epilepsy
  • c.569-14T>G Single submitter idiopathic generalized epilepsy
  • c.569-18T>C Single submitter idiopathic generalized epilepsy
  • c.622+13G>T Single submitter idiopathic generalized epilepsy
  • c.622+14C>A Single submitter idiopathic generalized epilepsy
  • c.622+14C>T Single submitter idiopathic generalized epilepsy
  • c.622+18G>A Single submitter idiopathic generalized epilepsy
  • c.622+19C>A Single submitter idiopathic generalized epilepsy
  • c.623-11G>C Single submitter idiopathic generalized epilepsy
  • c.623-13C>T Single submitter idiopathic generalized epilepsy
  • c.623-6C>T Single submitter idiopathic generalized epilepsy
  • c.623-7C>A Single submitter idiopathic generalized epilepsy
  • c.623-7C>T Single submitter idiopathic generalized epilepsy
  • c.755+14C>T Single submitter idiopathic generalized epilepsy
  • c.755+15C>T Single submitter idiopathic generalized epilepsy
  • c.755+16G>A Single submitter idiopathic generalized epilepsy
  • c.755+18G>A Single submitter idiopathic generalized epilepsy
  • c.755+9C>T Single submitter idiopathic generalized epilepsy
  • c.936+14C>A Single submitter idiopathic generalized epilepsy
  • c.936+15G>C Single submitter idiopathic generalized epilepsy
  • c.936+17C>A Single submitter idiopathic generalized epilepsy
  • c.936+17C>T Single submitter idiopathic generalized epilepsy
  • c.936+18G>A Single submitter idiopathic generalized epilepsy
  • c.936+18G>T Single submitter idiopathic generalized epilepsy
  • c.937-10T>C Single submitter idiopathic generalized epilepsy
  • c.937-17_937-15del Single submitter idiopathic generalized epilepsy
  • c.937-19C>T Single submitter idiopathic generalized epilepsy
  • c.937-8C>T Single submitter idiopathic generalized epilepsy
  • c.998+12G>A Single submitter idiopathic generalized epilepsy
  • c.998+13G>A Single submitter idiopathic generalized epilepsy
  • c.998+7C>T Single submitter idiopathic generalized epilepsy
  • c.998+8C>G Single submitter idiopathic generalized epilepsy
  • c.998+8C>T Single submitter idiopathic generalized epilepsy
  • c.998+9G>A Single submitter idiopathic generalized epilepsy
  • c.999-12G>A Single submitter idiopathic generalized epilepsy
  • c.999-13C>T Single submitter idiopathic generalized epilepsy
  • c.999-19C>G Single submitter idiopathic generalized epilepsy
  • c.999-20C>G Single submitter idiopathic generalized epilepsy
  • c.999-24_999-13dup Single submitter idiopathic generalized epilepsy
  • c.999-39_999-15del Single submitter idiopathic generalized epilepsy
  • p.Ala151= Single submitter idiopathic generalized epilepsy
  • p.Ala20= Single submitter idiopathic generalized epilepsy
  • p.Ala219= Single submitter idiopathic generalized epilepsy
  • p.Ala233= Single submitter idiopathic generalized epilepsy
  • p.Ala326= Single submitter idiopathic generalized epilepsy
  • p.Ala327= Single submitter idiopathic generalized epilepsy
  • p.Ala328= Single submitter idiopathic generalized epilepsy
  • p.Ala341= Single submitter idiopathic generalized epilepsy
  • p.Ala351= Single submitter idiopathic generalized epilepsy
  • p.Ala352= Single submitter idiopathic generalized epilepsy
  • p.Ala68= Single submitter idiopathic generalized epilepsy
  • p.Ala79= Single submitter idiopathic generalized epilepsy
  • p.Ala80= Single submitter idiopathic generalized epilepsy
  • p.Arg155= Single submitter idiopathic generalized epilepsy
  • p.Arg166= Single submitter idiopathic generalized epilepsy
  • p.Arg232= Single submitter idiopathic generalized epilepsy
  • p.Asn133= Single submitter idiopathic generalized epilepsy
  • p.Asn16= Single submitter idiopathic generalized epilepsy
  • p.Asn189= Single submitter idiopathic generalized epilepsy
  • p.Asp114= Single submitter idiopathic generalized epilepsy
  • p.Asp127= Single submitter idiopathic generalized epilepsy
  • p.Asp304= Single submitter idiopathic generalized epilepsy
  • p.Asp91Asn Single submitter idiopathic generalized epilepsy ⚠
  • p.Gln3= Single submitter idiopathic generalized epilepsy
  • p.Gln85= Single submitter idiopathic generalized epilepsy
  • p.Glu21= Single submitter idiopathic generalized epilepsy
  • p.Gly141= Single submitter idiopathic generalized epilepsy
  • p.Gly184= Single submitter idiopathic generalized epilepsy
  • p.Gly198= Single submitter idiopathic generalized epilepsy
  • p.Gly217= Single submitter idiopathic generalized epilepsy
  • p.Gly229= Single submitter idiopathic generalized epilepsy
  • p.Gly314= Single submitter idiopathic generalized epilepsy
  • p.Gly335= Single submitter idiopathic generalized epilepsy
  • p.Gly35= Single submitter idiopathic generalized epilepsy
  • p.His102= Single submitter idiopathic generalized epilepsy
  • p.His54= Single submitter idiopathic generalized epilepsy
  • p.Ile130= Single submitter idiopathic generalized epilepsy
  • p.Ile348= Single submitter
  • p.Ile67= Single submitter idiopathic generalized epilepsy
  • p.Leu101= Single submitter idiopathic generalized epilepsy
  • p.Leu115= Single submitter idiopathic generalized epilepsy
  • p.Leu47= Single submitter idiopathic generalized epilepsy
  • p.Phe119= Single submitter idiopathic generalized epilepsy
  • p.Pro11= Single submitter idiopathic generalized epilepsy
  • p.Pro113= Single submitter idiopathic generalized epilepsy
  • p.Pro13= Single submitter idiopathic generalized epilepsy
  • p.Pro24= Single submitter idiopathic generalized epilepsy
  • p.Pro245= Single submitter idiopathic generalized epilepsy
  • p.Pro246= Single submitter idiopathic generalized epilepsy
  • p.Pro29= Single submitter idiopathic generalized epilepsy
  • p.Pro323= Single submitter idiopathic generalized epilepsy
  • p.Pro343= Single submitter idiopathic generalized epilepsy
  • p.Pro38= Single submitter idiopathic generalized epilepsy
  • p.Pro55= Single submitter idiopathic generalized epilepsy
  • p.Pro7= Single submitter idiopathic generalized epilepsy
  • p.Pro86= Single submitter idiopathic generalized epilepsy
  • p.Ser331= Single submitter idiopathic generalized epilepsy
  • p.Ser34= Single submitter idiopathic generalized epilepsy
  • p.Ser60= Single submitter idiopathic generalized epilepsy
  • p.Thr174= Single submitter idiopathic generalized epilepsy
  • p.Thr183= Single submitter idiopathic generalized epilepsy
  • p.Thr215= Single submitter idiopathic generalized epilepsy
  • p.Thr216= Single submitter idiopathic generalized epilepsy
  • p.Thr30= Single submitter idiopathic generalized epilepsy
  • p.Tyr10= Single submitter idiopathic generalized epilepsy
  • p.Tyr201= Single submitter idiopathic generalized epilepsy
  • p.Tyr250= Single submitter idiopathic generalized epilepsy
  • p.Tyr315= Single submitter idiopathic generalized epilepsy
  • p.Tyr318= Single submitter idiopathic generalized epilepsy
  • p.Tyr334= Single submitter idiopathic generalized epilepsy
  • p.Tyr338= Single submitter idiopathic generalized epilepsy
  • p.Tyr354= Single submitter idiopathic generalized epilepsy
  • p.Val163= Single submitter idiopathic generalized epilepsy
  • p.Val177= Single submitter idiopathic generalized epilepsy
  • p.Val301= Single submitter idiopathic generalized epilepsy
  • c.-10G>A No assertion criteria RBFOX3-related disorder

Uncertain significance 146