RD3 — 261 ClinVar variants

All ClinVar germline RD3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 89 flagged for review →

9 Pathogenic · 2 Pathogenic/Likely pathogenic · 2 Likely pathogenic · 12 Conflicting · 12 Benign · 3 Benign/Likely benign · 48 Likely benign · 173 Uncertain significance

Full RD3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 89

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 3

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 61

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 25

The independent predictors disagree with each other — read with care.

All RD3 variants

Pathogenic 9

  • p.Arg38Ter Multiple submitters RD3-related disorder
  • p.Tyr60Ter Multiple submitters Leber congenital amaurosis
  • c.296+641_*606del Single submitter Leber congenital amaurosis 12
  • p.Gln80Ter Single submitter Leber congenital amaurosis 12
  • p.Glu27fs Single submitter Leber congenital amaurosis 12
  • p.Pro13fs Single submitter Leber congenital amaurosis 12
  • c.296+1G>A No assertion criteria Leber congenital amaurosis 12
  • p.Glu46fs No assertion criteria Leber congenital amaurosis 12
  • p.Glu46Ter No assertion criteria Leber congenital amaurosis 12

Pathogenic/Likely pathogenic 2

  • c.296+1G>T Multiple submitters RD3-related disorder
  • p.Ser5fs Multiple submitters RD3-related disorder

Likely pathogenic 2

  • p.Gln116fs Single submitter RD3-related disorder
  • p.His89fs Single submitter Leber congenital amaurosis 12

Conflicting classifications of pathogenicity 12

  • p.Ala50= Single submitter Leber congenital amaurosis 12
  • p.Arg156= Single submitter Leber congenital amaurosis 12
  • p.Arg45= Single submitter Leber congenital amaurosis 12
  • p.Arg47Cys Single submitter Leber congenital amaurosis 12 ⚠
  • p.Asp165Ala Single submitter Leber congenital amaurosis 12 ⚠
  • p.Glu132Ter Single submitter Leber congenital amaurosis 12
  • p.Ile166= Single submitter Leber congenital amaurosis 12
  • p.Pro109Ser Single submitter Leber congenital amaurosis 12 ⚠
  • p.Thr34= Single submitter Leber congenital amaurosis 12
  • p.Thr34Met Single submitter Leber congenital amaurosis 12 ⚠
  • p.Thr56= Single submitter Leber congenital amaurosis 12
  • p.Val173= Single submitter Leber congenital amaurosis 12

Benign 12

  • c.-1123T>C Multiple submitters Leber congenital amaurosis 12
  • c.*1331G>A Multiple submitters Leber congenital amaurosis 12
  • c.*1343G>C Multiple submitters Leber congenital amaurosis 12
  • c.*1649T>C Multiple submitters Leber congenital amaurosis 12
  • c.*193G>C Multiple submitters Leber congenital amaurosis 12
  • c.*368A>T Multiple submitters Leber congenital amaurosis 12
  • c.*471C>T Multiple submitters Leber congenital amaurosis 12
  • p.Arg167Lys Multiple submitters Leber congenital amaurosis 12
  • p.Glu23Asp Multiple submitters Leber congenital amaurosis 12
  • p.Leu79= Multiple submitters Leber congenital amaurosis 12
  • p.Thr28= Multiple submitters Leber congenital amaurosis 12
  • c.296+18G>A Single submitter Leber congenital amaurosis 12

Benign/Likely benign 3

  • c.296+18del Multiple submitters Leber congenital amaurosis 12
  • p.Asp195Val Multiple submitters Leber congenital amaurosis 12
  • p.Trp6Arg Multiple submitters Leber congenital amaurosis 12

Likely benign 48

  • c.-516T>G Multiple submitters Leber congenital amaurosis 12
  • c.*1281G>A Multiple submitters Leber congenital amaurosis 12
  • c.*2503G>T Multiple submitters Leber congenital amaurosis 12
  • c.*834G>A Multiple submitters Leber congenital amaurosis 12
  • p.Arg145= Multiple submitters Leber congenital amaurosis 12
  • p.Arg19= Multiple submitters Leber congenital amaurosis 12
  • p.Glu106= Multiple submitters Leber congenital amaurosis 12
  • p.Gly57= Multiple submitters Leber congenital amaurosis 12
  • p.Leu150= Multiple submitters Leber congenital amaurosis 12
  • p.Leu29= Multiple submitters Leber congenital amaurosis 12
  • p.Thr28Met Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Val84= Multiple submitters Leber congenital amaurosis 12
  • c.296+15G>T Single submitter
  • c.296+8C>T Single submitter Leber congenital amaurosis 12
  • c.296+9dup Single submitter Leber congenital amaurosis 12
  • c.297-16C>T Single submitter Leber congenital amaurosis 12
  • c.297-17C>T Single submitter
  • c.-294A>C Single submitter Leber congenital amaurosis 12
  • c.*1039T>A Single submitter Leber congenital amaurosis 12
  • c.*834G>T Single submitter Leber congenital amaurosis 12
  • p.Ala194= Single submitter Leber congenital amaurosis 12
  • p.Ala22= Single submitter Leber congenital amaurosis 12
  • p.Arg190= Single submitter Leber congenital amaurosis 12
  • p.Arg47= Single submitter Leber congenital amaurosis 12
  • p.Asn10= Single submitter Leber congenital amaurosis 12
  • p.Asp172= Single submitter Leber congenital amaurosis 12
  • p.Asp195= Single submitter Leber congenital amaurosis 12
  • p.Asp72= Single submitter Leber congenital amaurosis 12
  • p.Cys85= Single submitter Leber congenital amaurosis 12
  • p.Cys93= Single submitter Leber congenital amaurosis 12
  • p.Gln123= Single submitter Leber congenital amaurosis 12
  • p.Glu127= Single submitter Leber congenital amaurosis 12
  • p.Glu188= Single submitter Leber congenital amaurosis 12
  • p.Glu77= Single submitter Leber congenital amaurosis 12
  • p.Ile88= Single submitter Leber congenital amaurosis 12
  • p.Leu181= Single submitter Leber congenital amaurosis 12
  • p.Leu33= Single submitter Leber congenital amaurosis 12
  • p.Pro109= Single submitter Leber congenital amaurosis 12
  • p.Pro146= Single submitter Leber congenital amaurosis 12
  • p.Pro161= Single submitter Leber congenital amaurosis 12
  • p.Pro179= Single submitter Leber congenital amaurosis 12
  • p.Pro180= Single submitter Leber congenital amaurosis 12
  • p.Ser164= Single submitter Leber congenital amaurosis 12
  • p.Ser69= Single submitter Leber congenital amaurosis 12
  • p.Thr139= Single submitter Leber congenital amaurosis 12
  • p.Thr66= Single submitter Leber congenital amaurosis 12
  • p.Val111= Single submitter Leber congenital amaurosis 12
  • p.Val125= Single submitter Leber congenital amaurosis 12

Uncertain significance 173

  • c.-572G>A Multiple submitters Leber congenital amaurosis 12
  • c.*1277G>A Multiple submitters Leber congenital amaurosis 12
  • p.Ala135Val Multiple submitters Inborn genetic diseases ⚠
  • p.Arg15Gln Multiple submitters Inborn genetic diseases ⚠
  • p.Arg15Trp Multiple submitters Inborn genetic diseases ⚠
  • p.Arg182Gln Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Arg38Gln Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Arg45Gln Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Arg47His Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Arg68Trp Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Arg78Gln Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Arg8Trp Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Asp165Asn Multiple submitters Inborn genetic diseases ⚠
  • p.Asp176Gly Multiple submitters Inborn genetic diseases ⚠
  • p.Asp195Tyr Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Asp83Val Multiple submitters Inborn genetic diseases ⚠
  • p.Glu11Lys Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Gly57Ser Multiple submitters Inborn genetic diseases ⚠
  • p.Gly57Val Multiple submitters Leber congenital amaurosis 12
  • p.Ile169Val Multiple submitters Inborn genetic diseases ⚠
  • p.Ile76Thr Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Leu144Gln Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Leu7His Multiple submitters Inborn genetic diseases ⚠
  • p.Lys87Glu Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Met30Lys Multiple submitters Leber congenital amaurosis 12
  • p.Ser149Ile Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Ser170Phe Multiple submitters Leber congenital amaurosis 12 ⚠
  • p.Ter196Ser Multiple submitters Leber congenital amaurosis 12
  • p.Val86Ile Multiple submitters Inborn genetic diseases ⚠
  • c.297-3C>G Single submitter Leber congenital amaurosis 12
  • c.-1034G>A Single submitter Leber congenital amaurosis 12
  • c.-1052C>A Single submitter Leber congenital amaurosis 12
  • c.-1106G>A Single submitter Leber congenital amaurosis 12
  • c.-1118A>T Single submitter Leber congenital amaurosis 12
  • c.-1120G>A Single submitter Leber congenital amaurosis 12
  • c.-1160T>C Single submitter Leber congenital amaurosis 12
  • c.-12+10A>C Single submitter Leber congenital amaurosis 12
  • c.-138C>A Single submitter Leber congenital amaurosis 12
  • c.-138C>G Single submitter Leber congenital amaurosis 12
  • c.-139C>T Single submitter Leber congenital amaurosis 12
  • c.-188G>A Single submitter Leber congenital amaurosis 12
  • c.-189C>T Single submitter Leber congenital amaurosis 12
  • c.-25G>A Single submitter Leber congenital amaurosis 12
  • c.-291T>C Single submitter Leber congenital amaurosis 12
  • c.-296A>C Single submitter Leber congenital amaurosis 12
  • c.-302A>C Single submitter Leber congenital amaurosis 12
  • c.-304A>C Single submitter Leber congenital amaurosis 12
  • c.-329C>T Single submitter Leber congenital amaurosis 12
  • c.-332A>G Single submitter Leber congenital amaurosis 12
  • c.-336AC[16] Single submitter
  • c.-336AC[19] Single submitter
  • c.-336AC[23] Single submitter
  • c.-340G>A Single submitter Leber congenital amaurosis 12
  • c.-341C>T Single submitter Leber congenital amaurosis 12
  • c.-355G>A Single submitter Leber congenital amaurosis 12
  • c.-356C>T Single submitter Leber congenital amaurosis 12
  • c.-377G>A Single submitter Leber congenital amaurosis 12
  • c.-495T>G Single submitter Leber congenital amaurosis 12
  • c.-504G>A Single submitter Leber congenital amaurosis 12
  • c.-505C>T Single submitter Leber congenital amaurosis 12
  • c.-539G>T Single submitter Leber congenital amaurosis 12
  • c.-556G>A Single submitter Leber congenital amaurosis 12
  • c.-640G>A Single submitter Leber congenital amaurosis 12
  • c.-712G>C Single submitter Leber congenital amaurosis 12
  • c.-714G>C Single submitter Leber congenital amaurosis 12
  • c.-771G>T Single submitter Leber congenital amaurosis 12
  • c.-884C>A Single submitter Leber congenital amaurosis 12
  • c.-925G>A Single submitter Leber congenital amaurosis 12
  • c.*1005C>G Single submitter Leber congenital amaurosis 12
  • c.*1108C>T Single submitter Leber congenital amaurosis 12
  • c.*1287T>C Single submitter Leber congenital amaurosis 12
  • c.*1310G>A Single submitter Leber congenital amaurosis 12
  • c.*1323G>A Single submitter Leber congenital amaurosis 12
  • c.*1342T>G Single submitter Leber congenital amaurosis 12
  • c.*1553C>T Single submitter Leber congenital amaurosis 12
  • c.*1555T>C Single submitter Leber congenital amaurosis 12
  • c.*1582del Single submitter
  • c.*1634G>A Single submitter Leber congenital amaurosis 12
  • c.*1652C>T Single submitter Leber congenital amaurosis 12
  • c.*1672C>T Single submitter Leber congenital amaurosis 12
  • c.*1712G>A Single submitter Leber congenital amaurosis 12
  • c.*1983C>T Single submitter Leber congenital amaurosis 12
  • c.*2007G>A Single submitter Leber congenital amaurosis 12
  • c.*2081C>T Single submitter Leber congenital amaurosis 12
  • c.*2098G>A Single submitter Leber congenital amaurosis 12
  • c.*2138T>C Single submitter Leber congenital amaurosis 12
  • c.*213C>T Single submitter Leber congenital amaurosis 12
  • c.*2247A>T Single submitter Leber congenital amaurosis 12
  • c.*2311C>T Single submitter Leber congenital amaurosis 12
  • c.*2317G>A Single submitter Leber congenital amaurosis 12
  • c.*2330C>T Single submitter Leber congenital amaurosis 12
  • c.*2402A>G Single submitter Leber congenital amaurosis 12
  • c.*2451A>C Single submitter Leber congenital amaurosis 12
  • c.*2464C>T Single submitter Leber congenital amaurosis 12
  • c.*2481A>T Single submitter Leber congenital amaurosis 12
  • c.*263T>G Single submitter Leber congenital amaurosis 12
  • c.*330G>C Single submitter Leber congenital amaurosis 12
  • c.*44G>A Single submitter Leber congenital amaurosis 12
  • c.*527G>C Single submitter Leber congenital amaurosis 12
  • c.*590T>C Single submitter Leber congenital amaurosis 12
  • c.*591T>A Single submitter Leber congenital amaurosis 12
  • c.*592C>A Single submitter Leber congenital amaurosis 12
  • c.*738T>C Single submitter Leber congenital amaurosis 12
  • c.*814C>A Single submitter Leber congenital amaurosis 12
  • c.*882C>T Single submitter Leber congenital amaurosis 12
  • p.Ala12Val Single submitter Inborn genetic diseases ⚠
  • p.Ala22Asp Single submitter Leber congenital amaurosis 12 ⚠
  • p.Ala40Val Single submitter Leber congenital amaurosis 12 ⚠
  • p.Ala50Glu Single submitter Leber congenital amaurosis 12 ⚠
  • p.Ala50Thr Single submitter Leber congenital amaurosis 12 ⚠
  • p.Ala50Val Single submitter Leber congenital amaurosis 12 ⚠
  • p.Arg119Cys Single submitter Leber congenital amaurosis 12 ⚠
  • p.Arg156Phe Single submitter Leber congenital amaurosis 12
  • p.Arg158Leu Single submitter Leber congenital amaurosis 12 ⚠
  • p.Arg175Trp Single submitter Inborn genetic diseases ⚠
  • p.Arg182Leu Single submitter Leber congenital amaurosis 12 ⚠
  • p.Arg19Trp Single submitter Leber congenital amaurosis 12 ⚠
  • p.Arg45Trp Single submitter ⚠
  • p.Arg68Gln Single submitter Leber congenital amaurosis 12 ⚠
  • p.Arg78Pro Single submitter Leber congenital amaurosis 12 ⚠
  • p.Arg78Trp Single submitter Leber congenital amaurosis 12 ⚠
  • p.Arg8Gln Single submitter Leber congenital amaurosis 12 ⚠
  • p.Arg99= Single submitter Leber congenital amaurosis 12
  • p.Arg99Lys Single submitter Leber congenital amaurosis 12 ⚠
  • p.Asp165Gly Single submitter ⚠
  • p.Asp172Asn Single submitter Inborn genetic diseases ⚠
  • p.Gln116His Single submitter Leber congenital amaurosis 12 ⚠
  • p.Gln116Lys Single submitter Inborn genetic diseases ⚠
  • p.Gln123Leu Single submitter Leber congenital amaurosis 12 ⚠
  • p.Gln141His Single submitter Inborn genetic diseases ⚠
  • p.Gln80Leu Single submitter Inborn genetic diseases ⚠
  • p.Glu171Gln Single submitter Leber congenital amaurosis 12 ⚠
  • p.Glu171Lys Single submitter Leber congenital amaurosis 12 ⚠
  • p.Glu32Ala Single submitter ⚠
  • p.Glu32Gln Single submitter Leber congenital amaurosis 12 ⚠
  • p.Gly35Arg Single submitter Leber congenital amaurosis 12 ⚠
  • p.Gly57Asp Single submitter Inborn genetic diseases
  • p.Gly57Cys Single submitter Leber congenital amaurosis 12 ⚠
  • p.Ile4Thr Single submitter Leber congenital amaurosis 12 ⚠
  • p.Ile97Leu Single submitter Inborn genetic diseases ⚠
  • p.Leu104Pro Single submitter ⚠
  • p.Leu122Arg Single submitter Leber congenital amaurosis 12 ⚠
  • p.Leu138Arg Single submitter Inborn genetic diseases ⚠
  • p.Lys193Glu Single submitter Leber congenital amaurosis 12 ⚠
  • p.Lys53Asn Single submitter ⚠
  • p.Met129Lys Single submitter Leber congenital amaurosis 12 ⚠
  • p.Met1Ile Single submitter inherited retinal dystrophy
  • p.Met1Thr Single submitter Leber congenital amaurosis 12
  • p.Met1Val Single submitter Leber congenital amaurosis 12
  • p.Met37Ile Single submitter Leber congenital amaurosis 12 ⚠
  • p.Phe100Ser Single submitter ⚠
  • p.Pro161Ser Single submitter Leber congenital amaurosis 12
  • p.Pro187Ala Single submitter Leber congenital amaurosis 12 ⚠
  • p.Pro187His Single submitter Leber congenital amaurosis 12 ⚠
  • p.Pro21Ala Single submitter Leber congenital amaurosis 12 ⚠
  • p.Pro21Ser Single submitter Leber congenital amaurosis 12 ⚠
  • p.Pro67Thr Single submitter ⚠
  • p.Pro95Leu Single submitter Leber congenital amaurosis 12 ⚠
  • p.Pro95Ser Single submitter Leber congenital amaurosis 12 ⚠
  • p.Ser120= Single submitter Leber congenital amaurosis 12
  • p.Ser164Gly Single submitter Inborn genetic diseases ⚠
  • p.Ser61Asn Single submitter Leber congenital amaurosis 12 ⚠
  • p.Ser69Phe Single submitter Leber congenital amaurosis 12 ⚠
  • p.Thr139Arg Single submitter Inborn genetic diseases ⚠
  • p.Thr139Lys Single submitter Inborn genetic diseases ⚠
  • p.Thr139Met Single submitter ⚠
  • p.Thr139Pro Single submitter Inborn genetic diseases ⚠
  • p.Thr18Ile Single submitter Leber congenital amaurosis 12 ⚠
  • p.Thr28Lys Single submitter Leber congenital amaurosis 12 ⚠
  • p.Thr66Ile Single submitter ⚠
  • p.Val111Met Single submitter Inborn genetic diseases ⚠
  • p.Val121Met Single submitter Inborn genetic diseases ⚠
  • p.Val54Phe Single submitter Leber congenital amaurosis 12 ⚠