RFX6 — 333 ClinVar variants

All ClinVar germline RFX6 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 120 flagged for review →

23 Pathogenic · 3 Pathogenic/Likely pathogenic · 18 Likely pathogenic · 5 Conflicting · 42 Benign · 14 Benign/Likely benign · 100 Likely benign · 128 Uncertain significance

Full RFX6 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 120

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 3

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 89

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 28

The independent predictors disagree with each other — read with care.

All RFX6 variants

Pathogenic 23

Pathogenic/Likely pathogenic 3

  • p.Arg181Gln Multiple submitters RFX6-related disorder
  • p.Arg181Trp Multiple submitters RFX6-related disorder
  • p.Arg385Ter Multiple submitters hypoplastic pancreas-intestinal atresia-hypoplastic gallbalder syndrome

Likely pathogenic 18

  • c.1022+1G>C Single submitter RFX6-related disorder
  • c.380+1G>A Single submitter Syndromic Monogenic Diabetes
  • c.504+1G>A Single submitter hypoplastic pancreas-intestinal atresia-hypoplastic gallbalder syndrome
  • c.781-1G>A Single submitter RFX6-related disorder
  • p.Arg385Gln Single submitter hypoplastic pancreas-intestinal atresia-hypoplastic gallbalder syndrome
  • p.Asp494Gly Single submitter RFX6-related disorder ⚠
  • p.Gln764fs Single submitter hypoplastic pancreas-intestinal atresia-hypoplastic gallbalder syndrome
  • p.Glu362Ter Single submitter RFX6-related disorder
  • p.His293fs Single submitter RFX6-related disorder
  • p.Leu291fs Single submitter
  • p.Leu427fs Single submitter RFX6-related disorder
  • p.Lys489fs Single submitter RFX6-related disorder
  • p.Ser217Pro Single submitter hypoplastic pancreas-intestinal atresia-hypoplastic gallbalder syndrome ⚠
  • p.Ser679fs Single submitter monogenic diabetes
  • p.Ser715Ter Single submitter RFX6-related disorder
  • p.Tyr192Ter Single submitter
  • p.Val207fs Single submitter
  • p.Leu523Ter No assertion criteria RFX6-related disorder

Conflicting classifications of pathogenicity 5

Benign 42

Benign/Likely benign 14

Likely benign 100

Uncertain significance 128