RNASEH2B — 473 ClinVar variants

All ClinVar germline RNASEH2B variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 133 flagged for review →

19 Pathogenic · 12 Pathogenic/Likely pathogenic · 20 Likely pathogenic · 15 Conflicting · 12 Benign · 6 Benign/Likely benign · 221 Likely benign · 168 Uncertain significance

Full RNASEH2B gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 133

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 5

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 90

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 37

The independent predictors disagree with each other — read with care.

All RNASEH2B variants

Pathogenic 19

  • c.136+1del Multiple submitters Aicardi-Goutieres syndrome 2
  • c.510+1G>A Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Cys44Ter Multiple submitters RNASEH2B-related disorder
  • p.Gln111Ter Multiple submitters Aicardi-Goutieres syndrome
  • p.Val171fs Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Ala104_Lys106del Single submitter hereditary spastic paraplegia
  • p.Ala2fs Single submitter Aicardi-Goutieres syndrome 2
  • p.Asn33fs Single submitter Aicardi-Goutieres syndrome 2
  • p.Cys44fs Single submitter Aicardi-Goutieres syndrome 2
  • p.Glu223Ter Single submitter Aicardi-Goutieres syndrome 2
  • p.Glu22fs Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu164fs Single submitter Aicardi-Goutieres syndrome 2
  • p.Phe95fs Single submitter Aicardi-Goutieres syndrome 2
  • p.Ser159fs Single submitter Aicardi-Goutieres syndrome 2
  • p.Ser217fs Single submitter Aicardi-Goutieres syndrome 2
  • p.Ser246Ter Single submitter Aicardi-Goutieres syndrome
  • p.Tyr231Ter Single submitter Aicardi-Goutieres syndrome 2
  • p.Tyr23Ter Single submitter Aicardi-Goutieres syndrome 2
  • p.Val41fs Single submitter Aicardi-Goutieres syndrome 2

Pathogenic/Likely pathogenic 12

  • c.437-1G>A Multiple submitters Aicardi-Goutieres syndrome 2
  • c.510+1del Multiple submitters Aicardi-Goutieres syndrome 2
  • c.511-1G>A Multiple submitters Aicardi-Goutieres syndrome 2
  • c.65-13G>A Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Ala177Thr Multiple submitters Hereditary Spastic Paraplegia (HSP) ⚠
  • p.Asp119Gly Multiple submitters RNASEH2B-related disorder
  • p.Gln58Ter Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Ser240Ter Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Ser28Ter Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Thr163Ile Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Tyr156Ter Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Val185Gly Multiple submitters Aicardi-Goutieres syndrome 2

Likely pathogenic 20

Conflicting classifications of pathogenicity 15

  • c.136+8C>T Single submitter Global developmental delay
  • c.245-8A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.322-17A>G Single submitter Aicardi-Goutieres syndrome 2
  • p.Asn120= Single submitter Aicardi-Goutieres syndrome 2
  • p.Asn152Ser Single submitter Aicardi-Goutieres syndrome 2 ⚠
  • p.Glu68Gly Single submitter Aicardi-Goutieres syndrome 2 ⚠
  • p.Ile220Thr Single submitter Inborn genetic diseases ⚠
  • p.Leu138Phe Single submitter Aicardi-Goutieres syndrome 2 ⚠
  • p.Lys170fs Single submitter Aicardi-Goutieres syndrome 2
  • p.Met1Thr Single submitter Aicardi-Goutieres syndrome 2
  • p.Met31Thr Single submitter Aicardi-Goutieres syndrome 2 ⚠
  • p.Ser252= Single submitter Aicardi-Goutieres syndrome 2
  • p.Thr299= Single submitter Aicardi-Goutieres syndrome 2
  • p.Val175Met Single submitter Aicardi-Goutieres syndrome 2 ⚠
  • p.Val91Met Single submitter Inborn genetic diseases ⚠

Benign 12

Benign/Likely benign 6

  • c.137-19G>C Multiple submitters Aicardi-Goutieres syndrome 2
  • c.822+6T>C Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Ala287Ser Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Leu52= Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Thr263Ser Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Thr299Ala Multiple submitters Aicardi-Goutieres syndrome 2

Likely benign 221

  • c.245-35C>T Multiple submitters
  • c.321+18A>C Multiple submitters Aicardi-Goutieres syndrome 2
  • c.322-54T>G Multiple submitters
  • c.617-7C>G Multiple submitters Aicardi-Goutieres syndrome 2
  • c.742-13T>C Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Arg188= Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Gln199= Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Glu254= Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Leu270= Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Phe61= Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Ser78= Multiple submitters Aicardi-Goutieres syndrome 2
  • p.Val183= Multiple submitters Aicardi-Goutieres syndrome 2
  • c.136+10C>G Single submitter Aicardi-Goutieres syndrome 2
  • c.136+15C>A Single submitter Aicardi-Goutieres syndrome 2
  • c.136+16A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.136+179A>C Single submitter
  • c.137-10G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.137-11del Single submitter Aicardi-Goutieres syndrome 2
  • c.137-15G>T Single submitter Aicardi-Goutieres syndrome 2
  • c.137-17_137-14del Single submitter Aicardi-Goutieres syndrome 2
  • c.137-8C>T Single submitter Aicardi-Goutieres syndrome 2
  • c.244+12G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.244+7G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.244+9C>G Single submitter
  • c.245-12T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.245-12T>G Single submitter Aicardi-Goutieres syndrome 2
  • c.245-20_245-19del Single submitter Aicardi-Goutieres syndrome 2
  • c.245-20A>T Single submitter Aicardi-Goutieres syndrome 2
  • c.245-5T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.245-7T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.321+10C>T Single submitter Aicardi-Goutieres syndrome 2
  • c.321+11A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.321+12G>T Single submitter Aicardi-Goutieres syndrome 2
  • c.321+13C>T Single submitter Aicardi-Goutieres syndrome 2
  • c.321+15C>G Single submitter Aicardi-Goutieres syndrome 2
  • c.321+15C>T Single submitter Aicardi-Goutieres syndrome 2
  • c.321+16_321+17dup Single submitter Aicardi-Goutieres syndrome 2
  • c.321+16G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.321+16G>C Single submitter Aicardi-Goutieres syndrome 2
  • c.321+18A>T Single submitter Aicardi-Goutieres syndrome 2
  • c.321+20C>T Single submitter Aicardi-Goutieres syndrome 2
  • c.322-10_322-9del Single submitter Aicardi-Goutieres syndrome 2
  • c.322-10G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.322-10G>C Single submitter Aicardi-Goutieres syndrome 2
  • c.322-14_322-11del Single submitter Aicardi-Goutieres syndrome 2
  • c.322-14A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.322-15dup Single submitter Aicardi-Goutieres syndrome 2
  • c.322-15T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.322-18A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.322-18A>T Single submitter Aicardi-Goutieres syndrome 2
  • c.322-19C>A Single submitter Aicardi-Goutieres syndrome 2
  • c.322-217T>C Single submitter
  • c.322-4T>A Single submitter Aicardi-Goutieres syndrome 2
  • c.322-5T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.322-5T>G Single submitter Aicardi-Goutieres syndrome 2
  • c.322-9T>G Single submitter Aicardi-Goutieres syndrome 2
  • c.436+10A>C Single submitter Aicardi-Goutieres syndrome 2
  • c.436+17A>C Single submitter Aicardi-Goutieres syndrome 2
  • c.436+8A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.437-18T>A Single submitter Aicardi-Goutieres syndrome 2
  • c.437-20A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.437-5T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.437-9T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.510+10C>T Single submitter Aicardi-Goutieres syndrome 2
  • c.510+12C>G Single submitter Aicardi-Goutieres syndrome 2
  • c.510+12C>T Single submitter Aicardi-Goutieres syndrome 2
  • c.510+13T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.510+17G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.510+18T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.510+19G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.510+7T>G Single submitter Aicardi-Goutieres syndrome 2
  • c.511-16C>G Single submitter Aicardi-Goutieres syndrome 2
  • c.511-16C>T Single submitter Aicardi-Goutieres syndrome 2
  • c.511-18C>A Single submitter Aicardi-Goutieres syndrome 2
  • c.511-19C>A Single submitter Aicardi-Goutieres syndrome 2
  • c.511-4A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.511-4A>T Single submitter Aicardi-Goutieres syndrome 2
  • c.511-5C>A Single submitter Aicardi-Goutieres syndrome 2
  • c.511-9G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.616+10G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.616+10G>T Single submitter Aicardi-Goutieres syndrome 2
  • c.616+12A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.616+13T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.616+16T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.616+9dup Single submitter Aicardi-Goutieres syndrome 2
  • c.617-11G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.617-11G>C Single submitter Aicardi-Goutieres syndrome 2
  • c.617-12del Single submitter Aicardi-Goutieres syndrome 2
  • c.617-14_617-12del Single submitter Aicardi-Goutieres syndrome 2
  • c.617-14T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.617-17_617-15del Single submitter Aicardi-Goutieres syndrome 2
  • c.617-19C>T Single submitter Aicardi-Goutieres syndrome 2
  • c.617-4T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.617-6T>A Single submitter Aicardi-Goutieres syndrome 2
  • c.617-9_617-8del Single submitter Aicardi-Goutieres syndrome 2
  • c.64+11G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.64+16C>G Single submitter Aicardi-Goutieres syndrome 2
  • c.64+7_64+8del Single submitter Aicardi-Goutieres syndrome 2
  • c.65-11T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.65-13G>C Single submitter Aicardi-Goutieres syndrome 2
  • c.65-14C>T Single submitter Aicardi-Goutieres syndrome 2
  • c.65-18T>A Single submitter Aicardi-Goutieres syndrome 2
  • c.65-19A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.698+125A>G Single submitter
  • c.698+13T>A Single submitter Aicardi-Goutieres syndrome 2
  • c.698+14A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.698+16C>A Single submitter Aicardi-Goutieres syndrome 2
  • c.698+19C>T Single submitter Aicardi-Goutieres syndrome 2
  • c.699-10A>T Single submitter Aicardi-Goutieres syndrome 2
  • c.699-20G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.699-4T>G Single submitter Aicardi-Goutieres syndrome 2
  • c.699-6T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.741+10009C>T Single submitter
  • c.741+10012G>A Single submitter
  • c.741+11G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.741+20A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.741+8G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.741+8G>T Single submitter Aicardi-Goutieres syndrome 2
  • c.741+9997G>A Single submitter
  • c.742-12C>T Single submitter Aicardi-Goutieres syndrome 2
  • c.742-135G>A Single submitter
  • c.742-15G>T Single submitter Aicardi-Goutieres syndrome 2
  • c.742-177G>A Single submitter
  • c.742-18A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.742-19C>T Single submitter Aicardi-Goutieres syndrome 2
  • c.742-20T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.822+13A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.822+14G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.822+15G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.822+15G>T Single submitter Aicardi-Goutieres syndrome 2
  • c.822+18T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.822+8G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.822+9G>A Single submitter Aicardi-Goutieres syndrome 2
  • c.823-13T>A Single submitter Aicardi-Goutieres syndrome 2
  • c.823-13T>C Single submitter Aicardi-Goutieres syndrome 2
  • c.823-16_823-15del Single submitter Aicardi-Goutieres syndrome 2
  • c.823-17C>T Single submitter Aicardi-Goutieres syndrome 2
  • c.823-18_823-15del Single submitter Aicardi-Goutieres syndrome 2
  • c.823-18T>G Single submitter Aicardi-Goutieres syndrome 2
  • c.823-19C>G Single submitter Aicardi-Goutieres syndrome 2
  • c.823-5A>G Single submitter Aicardi-Goutieres syndrome 2
  • c.823-6del Single submitter Aicardi-Goutieres syndrome 2
  • c.823-8A>T Single submitter Aicardi-Goutieres syndrome 2
  • c.823-9C>A Single submitter Aicardi-Goutieres syndrome 2
  • c.*309G>A Single submitter
  • p.Ala176= Single submitter Aicardi-Goutieres syndrome 2
  • p.Ala177= Single submitter Aicardi-Goutieres syndrome 2
  • p.Ala193= Single submitter Aicardi-Goutieres syndrome 2
  • p.Ala239= Single submitter Aicardi-Goutieres syndrome 2
  • p.Ala281= Single submitter Aicardi-Goutieres syndrome 2
  • p.Ala285= Single submitter Aicardi-Goutieres syndrome 2
  • p.Asn152= Single submitter Aicardi-Goutieres syndrome 2
  • p.Asn276= Single submitter Aicardi-Goutieres syndrome 2
  • p.Asn42= Single submitter Aicardi-Goutieres syndrome 2
  • p.Asp26= Single submitter Aicardi-Goutieres syndrome 2
  • p.Asp261= Single submitter Aicardi-Goutieres syndrome 2
  • p.Asp290= Single submitter Aicardi-Goutieres syndrome 2
  • p.Asp298= Single submitter Aicardi-Goutieres syndrome 2
  • p.Cys125= Single submitter Aicardi-Goutieres syndrome 2
  • p.Cys44= Single submitter Aicardi-Goutieres syndrome 2
  • p.Gln111= Single submitter Aicardi-Goutieres syndrome 2
  • p.Gln59= Single submitter Aicardi-Goutieres syndrome 2
  • p.Gln77= Single submitter Aicardi-Goutieres syndrome 2
  • p.Gln80= Single submitter Aicardi-Goutieres syndrome 2
  • p.Glu143= Single submitter Aicardi-Goutieres syndrome 2
  • p.Glu161= Single submitter Aicardi-Goutieres syndrome 2
  • p.Gly108= Single submitter Aicardi-Goutieres syndrome 2
  • p.Gly34= Single submitter Aicardi-Goutieres syndrome 2
  • p.His140= Single submitter Aicardi-Goutieres syndrome 2
  • p.His213= Single submitter Aicardi-Goutieres syndrome 2
  • p.Ile50= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu127= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu129= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu134= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu164= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu167= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu215= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu234= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu24= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu241= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu251= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu286= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu57= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu60= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu85= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu94= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu96= Single submitter Aicardi-Goutieres syndrome 2
  • p.Leu98= Single submitter Aicardi-Goutieres syndrome 2
  • p.Lys106= Single submitter Aicardi-Goutieres syndrome 2
  • p.Lys109= Single submitter Aicardi-Goutieres syndrome 2
  • p.Lys136= Single submitter Aicardi-Goutieres syndrome 2
  • p.Lys162= Single submitter Aicardi-Goutieres syndrome 2
  • p.Lys271= Single submitter Aicardi-Goutieres syndrome 2
  • p.Lys311= Single submitter Aicardi-Goutieres syndrome 2
  • p.Lys32= Single submitter Aicardi-Goutieres syndrome 2
  • p.Lys64= Single submitter Aicardi-Goutieres syndrome 2
  • p.Lys69= Single submitter Aicardi-Goutieres syndrome 2
  • p.Phe74= Single submitter Aicardi-Goutieres syndrome 2
  • p.Pro112= Single submitter Aicardi-Goutieres syndrome 2
  • p.Pro132= Single submitter Aicardi-Goutieres syndrome 2
  • p.Pro148= Single submitter Aicardi-Goutieres syndrome 2
  • p.Pro235= Single submitter Aicardi-Goutieres syndrome 2
  • p.Pro242= Single submitter
  • p.Pro245= Single submitter Aicardi-Goutieres syndrome 2
  • p.Pro43= Single submitter Aicardi-Goutieres syndrome 2
  • p.Ser187= Single submitter Aicardi-Goutieres syndrome 2
  • p.Ser277= Single submitter Aicardi-Goutieres syndrome 2
  • p.Thr142= Single submitter Aicardi-Goutieres syndrome 2
  • p.Thr163= Single submitter Aicardi-Goutieres syndrome 2
  • p.Thr174= Single submitter Aicardi-Goutieres syndrome 2
  • p.Thr192= Single submitter Aicardi-Goutieres syndrome 2
  • p.Thr263= Single submitter Aicardi-Goutieres syndrome 2
  • p.Thr280= Single submitter Aicardi-Goutieres syndrome 2
  • p.Tyr100= Single submitter Aicardi-Goutieres syndrome 2
  • p.Tyr156= Single submitter Aicardi-Goutieres syndrome 2
  • p.Tyr158= Single submitter Aicardi-Goutieres syndrome 2
  • p.Tyr262= Single submitter Aicardi-Goutieres syndrome 2
  • p.Tyr51= Single submitter Aicardi-Goutieres syndrome 2
  • p.Val118= Single submitter Aicardi-Goutieres syndrome 2
  • p.Val185= Single submitter Aicardi-Goutieres syndrome 2
  • p.Val289= Single submitter Aicardi-Goutieres syndrome 2

Uncertain significance 168