RNASEH2C — 312 ClinVar variants

All ClinVar germline RNASEH2C variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 106 flagged for review →

1 Pathogenic · 1 Pathogenic/Likely pathogenic · 4 Likely pathogenic · 11 Conflicting · 9 Benign · 6 Benign/Likely benign · 123 Likely benign · 157 Uncertain significance

Full RNASEH2C gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 106

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 3

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 75

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 27

The independent predictors disagree with each other — read with care.

All RNASEH2C variants

Pathogenic 1

Pathogenic/Likely pathogenic 1

Likely pathogenic 4

Conflicting classifications of pathogenicity 11

  • c.173-14G>A Single submitter Aicardi-Goutieres syndrome 3
  • c.468+8G>A Single submitter Aicardi-Goutieres syndrome 3
  • c.469-7G>T Single submitter Aicardi-Goutieres syndrome 3
  • c.*719T>G Single submitter Aicardi-Goutieres syndrome 3
  • p.Glu60fs Single submitter Inborn genetic diseases
  • p.Gly139= Single submitter Aicardi-Goutieres syndrome 3
  • p.Gly65Asp Single submitter Aicardi-Goutieres syndrome 3 ⚠
  • p.Pro151Ser Single submitter Aicardi-Goutieres syndrome ⚠
  • p.Pro76Leu Single submitter Aicardi-Goutieres syndrome 3 ⚠
  • p.Pro98Ser Single submitter Aicardi-Goutieres syndrome 3 ⚠
  • p.Val83Met Single submitter Aicardi-Goutieres syndrome 3 ⚠

Benign 9

  • c.*1527A>C Multiple submitters Aicardi-Goutieres syndrome 3
  • c.*1776C>T Multiple submitters Aicardi-Goutieres syndrome 3
  • c.*1917T>C Multiple submitters Aicardi-Goutieres syndrome 3
  • c.*2036C>T Multiple submitters Aicardi-Goutieres syndrome 3
  • c.*2097C>T Multiple submitters Aicardi-Goutieres syndrome 3
  • c.*572C>T Multiple submitters Aicardi-Goutieres syndrome 3
  • c.*948dup Multiple submitters Aicardi-Goutieres syndrome 3
  • c.*1621A>G Single submitter Aicardi-Goutieres syndrome 3
  • p.Arg66= Single submitter Aicardi-Goutieres syndrome 3

Benign/Likely benign 6

  • c.468+13G>A Multiple submitters Aicardi-Goutieres syndrome 3
  • c.-10A>G Multiple submitters Aicardi-Goutieres syndrome 3
  • c.*1007C>G Multiple submitters Aicardi-Goutieres syndrome 3
  • c.*1295T>C Multiple submitters Aicardi-Goutieres syndrome 3
  • p.Ala156= Multiple submitters Aicardi-Goutieres syndrome 3
  • p.Lys90del Multiple submitters Aicardi-Goutieres syndrome 3

Likely benign 123

  • c.348+19T>C Multiple submitters Aicardi-Goutieres syndrome 3
  • c.349-16C>T Multiple submitters Aicardi-Goutieres syndrome 3
  • c.349-9C>T Multiple submitters Aicardi-Goutieres syndrome 3
  • c.468+11G>A Multiple submitters Aicardi-Goutieres syndrome 3
  • c.468+14G>A Multiple submitters Aicardi-Goutieres syndrome 3
  • c.468+16G>A Multiple submitters Aicardi-Goutieres syndrome 3
  • c.468+8G>C Multiple submitters Aicardi-Goutieres syndrome 3
  • c.469-9C>G Multiple submitters Aicardi-Goutieres syndrome 3
  • c.*1017G>A Multiple submitters Aicardi-Goutieres syndrome 3
  • p.Arg64= Multiple submitters Aicardi-Goutieres syndrome 3
  • p.Glu71= Multiple submitters Aicardi-Goutieres syndrome 3
  • c.173-12C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.173-13C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.173-15C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.173-20C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.173-4C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.173-5T>C Single submitter Aicardi-Goutieres syndrome 3
  • c.348+10G>A Single submitter Aicardi-Goutieres syndrome 3
  • c.348+10G>C Single submitter Aicardi-Goutieres syndrome 3
  • c.348+11G>A Single submitter Aicardi-Goutieres syndrome 3
  • c.348+11G>C Single submitter Aicardi-Goutieres syndrome 3
  • c.348+12G>A Single submitter Aicardi-Goutieres syndrome 3
  • c.348+12G>C Single submitter Aicardi-Goutieres syndrome 3
  • c.348+16G>A Single submitter Aicardi-Goutieres syndrome 3
  • c.348+17G>A Single submitter Aicardi-Goutieres syndrome 3
  • c.348+17G>C Single submitter Aicardi-Goutieres syndrome 3
  • c.348+17G>T Single submitter Aicardi-Goutieres syndrome 3
  • c.348+18G>A Single submitter Aicardi-Goutieres syndrome 3
  • c.348+19T>G Single submitter Aicardi-Goutieres syndrome 3
  • c.348+20T>G Single submitter Aicardi-Goutieres syndrome 3
  • c.348+7A>G Single submitter Aicardi-Goutieres syndrome 3
  • c.348+7A>T Single submitter Aicardi-Goutieres syndrome 3
  • c.349-10C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.349-12C>A Single submitter Aicardi-Goutieres syndrome 3
  • c.349-12C>G Single submitter Aicardi-Goutieres syndrome 3
  • c.349-12C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.349-13G>A Single submitter Aicardi-Goutieres syndrome 3
  • c.349-14G>C Single submitter Aicardi-Goutieres syndrome 3
  • c.349-18G>A Single submitter Aicardi-Goutieres syndrome 3
  • c.349-6C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.349-8T>G Single submitter Aicardi-Goutieres syndrome 3
  • c.349-9C>G Single submitter Aicardi-Goutieres syndrome 3
  • c.468+10C>G Single submitter Aicardi-Goutieres syndrome 3
  • c.468+10C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.468+12_468+13del Single submitter Aicardi-Goutieres syndrome 3
  • c.468+13G>C Single submitter Aicardi-Goutieres syndrome 3
  • c.468+14G>T Single submitter Aicardi-Goutieres syndrome 3
  • c.468+15_468+22del Single submitter Aicardi-Goutieres syndrome 3
  • c.468+17T>C Single submitter Aicardi-Goutieres syndrome 3
  • c.468+18T>C Single submitter Aicardi-Goutieres syndrome 3
  • c.468+20C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.468+20del Single submitter Aicardi-Goutieres syndrome 3
  • c.468+7A>G Single submitter Aicardi-Goutieres syndrome 3
  • c.469-10C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.469-11T>G Single submitter Aicardi-Goutieres syndrome 3
  • c.469-12C>A Single submitter Aicardi-Goutieres syndrome 3
  • c.469-12C>G Single submitter Aicardi-Goutieres syndrome 3
  • c.469-14G>T Single submitter Aicardi-Goutieres syndrome 3
  • c.469-15C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.469-17G>A Single submitter Aicardi-Goutieres syndrome 3
  • c.469-19G>A Single submitter Aicardi-Goutieres syndrome 3
  • c.469-20A>G Single submitter Aicardi-Goutieres syndrome 3
  • c.469-9C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.*295C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.*310C>T Single submitter Aicardi-Goutieres syndrome 3
  • c.*542G>A Single submitter Aicardi-Goutieres syndrome 3
  • c.*692A>G Single submitter
  • c.*853G>A Single submitter
  • p.Ala124= Single submitter Aicardi-Goutieres syndrome 3
  • p.Ala142= Single submitter Aicardi-Goutieres syndrome 3
  • p.Ala147= Single submitter Aicardi-Goutieres syndrome 3
  • p.Ala7= Single submitter Aicardi-Goutieres syndrome 3
  • p.Ala74= Single submitter Aicardi-Goutieres syndrome 3
  • p.Ala8= Single submitter Aicardi-Goutieres syndrome 3
  • p.Arg11= Single submitter Aicardi-Goutieres syndrome 3
  • p.Arg114= Single submitter Aicardi-Goutieres syndrome 3
  • p.Arg145= Single submitter Aicardi-Goutieres syndrome 3
  • p.Arg22= Single submitter Aicardi-Goutieres syndrome 3
  • p.Asp105= Single submitter Aicardi-Goutieres syndrome 3
  • p.Asp5= Single submitter Aicardi-Goutieres syndrome 3
  • p.Glu108= Single submitter Aicardi-Goutieres syndrome 3
  • p.Glu135= Single submitter Aicardi-Goutieres syndrome 3
  • p.Glu163= Single submitter Aicardi-Goutieres syndrome 3
  • p.Glu2= Single submitter Aicardi-Goutieres syndrome 3
  • p.Glu6= Single submitter Aicardi-Goutieres syndrome 3
  • p.Glu72= Single submitter Aicardi-Goutieres syndrome 3
  • p.Glu87= Single submitter Aicardi-Goutieres syndrome 3
  • p.Gly103= Single submitter Aicardi-Goutieres syndrome 3
  • p.Gly133= Single submitter Aicardi-Goutieres syndrome 3
  • p.Gly146= Single submitter Aicardi-Goutieres syndrome 3
  • p.Gly4= Single submitter Aicardi-Goutieres syndrome 3
  • p.Gly40= Single submitter Aicardi-Goutieres syndrome 3
  • p.Gly58= Single submitter Aicardi-Goutieres syndrome 3
  • p.Gly81= Single submitter Aicardi-Goutieres syndrome 3
  • p.His158= Single submitter Aicardi-Goutieres syndrome 3
  • p.Ile137= Single submitter Aicardi-Goutieres syndrome 3
  • p.Ile9= Single submitter Aicardi-Goutieres syndrome 3
  • p.Leu112= Single submitter Aicardi-Goutieres syndrome 3
  • p.Leu131= Single submitter Aicardi-Goutieres syndrome 3
  • p.Leu134= Single submitter Aicardi-Goutieres syndrome 3
  • p.Leu153= Single submitter Aicardi-Goutieres syndrome 3
  • p.Leu32= Single submitter Aicardi-Goutieres syndrome 3
  • p.Leu79= Single submitter Aicardi-Goutieres syndrome 3
  • p.Leu99= Single submitter Aicardi-Goutieres syndrome 3
  • p.Lys89= Single submitter Aicardi-Goutieres syndrome 3
  • p.Phe119= Single submitter Aicardi-Goutieres syndrome 3
  • p.Pro111= Single submitter Aicardi-Goutieres syndrome 3
  • p.Pro140= Single submitter Aicardi-Goutieres syndrome 3
  • p.Pro162= Single submitter Aicardi-Goutieres syndrome 3
  • p.Pro98= Single submitter Aicardi-Goutieres syndrome 3
  • p.Ser102= Single submitter Aicardi-Goutieres syndrome 3
  • p.Ser127= Single submitter Aicardi-Goutieres syndrome 3
  • p.Ser3= Single submitter Aicardi-Goutieres syndrome 3
  • p.Ser62= Single submitter Aicardi-Goutieres syndrome 3
  • p.Thr123= Single submitter Aicardi-Goutieres syndrome 3
  • p.Thr149= Single submitter Aicardi-Goutieres syndrome 3
  • p.Thr86= Single submitter Aicardi-Goutieres syndrome 3
  • p.Tyr82= Single submitter Aicardi-Goutieres syndrome 3
  • p.Val161= Single submitter Aicardi-Goutieres syndrome 3
  • p.Val80= Single submitter Aicardi-Goutieres syndrome 3
  • p.Val83= Single submitter Aicardi-Goutieres syndrome 3
  • p.Val85= Single submitter Aicardi-Goutieres syndrome 3
  • p.Gln107= No assertion criteria RNASEH2C-related disorder

Uncertain significance 157