RNF13 — 299 ClinVar variants
All ClinVar germline RNF13 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 137 flagged for review →
3 Pathogenic · 1 Pathogenic/Likely pathogenic · 4 Likely pathogenic · 17 Conflicting · 19 Benign · 7 Benign/Likely benign · 102 Likely benign · 146 Uncertain significance
Full RNF13 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 137
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 13
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
- RNF13 p.Arg373Gln Conflicting Single submitter
- RNF13 p.Asp160Gly Conflicting Single submitter
-
RNF13 p.Asp251Glu
Conflicting
Single submitter
developmental and epileptic encephalopathy, 73
- RNF13 p.Gln368Lys Conflicting Single submitter
- RNF13 p.Glu337Gln Conflicting Single submitter
- RNF13 p.Leu100Phe Conflicting Single submitter
- RNF13 p.Leu30Gln Conflicting Single submitter
- RNF13 p.Leu326Ser Conflicting Single submitter
- RNF13 p.Lys282Met Conflicting Single submitter
- RNF13 p.Ser327Leu Conflicting Single submitter
-
RNF13 p.Thr349Ala
Conflicting
Single submitter
developmental and epileptic encephalopathy, 73
- RNF13 p.Tyr183Cys Conflicting Single submitter
- RNF13 p.Val15Ile Conflicting Single submitter
Predictors lean, ClinVar uncertain 90
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- RNF13 p.Ala378Val Uncertain significance Multiple submitters
-
RNF13 p.Arg212Thr
Uncertain significance
Multiple submitters
developmental and epileptic encephalopathy, 73
- RNF13 p.Arg215Lys Uncertain significance Multiple submitters
- RNF13 p.Arg219His Uncertain significance Multiple submitters
- RNF13 p.Asn346Ser Uncertain significance Multiple submitters
- RNF13 p.Ile137Val Uncertain significance Multiple submitters
- RNF13 p.Ile171Phe Uncertain significance Multiple submitters
- RNF13 p.Leu19Phe Uncertain significance Multiple submitters
- RNF13 p.Met132Thr Uncertain significance Multiple submitters
- RNF13 p.Thr92Ser Uncertain significance Multiple submitters
- RNF13 p.Tyr16His Uncertain significance Multiple submitters
- RNF13 p.Ala118Thr Uncertain significance Single submitter
- RNF13 p.Ala12Thr Uncertain significance Single submitter
- RNF13 p.Ala316Pro Uncertain significance Single submitter
- RNF13 p.Ala320Val Uncertain significance Single submitter
- RNF13 p.Ala354Gly Uncertain significance Single submitter
- RNF13 p.Arg212Lys Uncertain significance Single submitter
- RNF13 p.Arg214Lys Uncertain significance Single submitter
- RNF13 p.Arg214Thr Uncertain significance Single submitter
- RNF13 p.Arg313Thr Uncertain significance Single submitter
- RNF13 p.Arg330Cys Uncertain significance Single submitter
- RNF13 p.Arg330His Uncertain significance Single submitter
- RNF13 p.Arg373Gly Uncertain significance Single submitter
- RNF13 p.Arg373Trp Uncertain significance Single submitter
- RNF13 p.Arg99Gly Uncertain significance Single submitter
- RNF13 p.Asn356Ser Uncertain significance Single submitter
- RNF13 p.Asn359Lys Uncertain significance Single submitter
- RNF13 p.Asn70Asp Uncertain significance Single submitter
- RNF13 p.Asp125Asn Uncertain significance Single submitter
- RNF13 p.Asp128Val Uncertain significance Single submitter
- RNF13 p.Asp136Asn Uncertain significance Single submitter
- RNF13 p.Asp221Tyr Uncertain significance Single submitter
- RNF13 p.Asp268Asn Uncertain significance Single submitter
- RNF13 p.Asp340Ala Uncertain significance Single submitter
- RNF13 p.Asp345Asn Uncertain significance Single submitter
- RNF13 p.Asp362Glu Uncertain significance Single submitter
- RNF13 p.Asp87Gly Uncertain significance Single submitter
- RNF13 p.Cys266Tyr Uncertain significance Single submitter
- RNF13 p.Gln14Arg Uncertain significance Single submitter
- RNF13 p.Gln321Pro Uncertain significance Single submitter
- RNF13 p.Gln333His Uncertain significance Single submitter
- RNF13 p.Glu301Val Uncertain significance Single submitter
- RNF13 p.Glu304Asp Uncertain significance Single submitter
- RNF13 p.Glu307Asp Uncertain significance Single submitter
- RNF13 p.Glu337Asp Uncertain significance Single submitter
- RNF13 p.Glu342Gln Uncertain significance Single submitter
- RNF13 p.Glu347Lys Uncertain significance Single submitter
- RNF13 p.Gly115Arg Uncertain significance Single submitter
- RNF13 p.Gly234Arg Uncertain significance Single submitter
- RNF13 p.His260Tyr Uncertain significance Single submitter
- RNF13 p.His332Leu Uncertain significance Single submitter
- RNF13 p.Ile120Val Uncertain significance Single submitter
-
RNF13 p.Ile36Val
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 73
- RNF13 p.Ile5Val Uncertain significance Single submitter
- RNF13 p.Ile69Val Uncertain significance Single submitter
- RNF13 p.Ile80Val Uncertain significance Single submitter
- RNF13 p.Leu100Val Uncertain significance Single submitter
- RNF13 p.Leu218His Uncertain significance Single submitter
- RNF13 p.Leu29Ile Uncertain significance Single submitter
- RNF13 p.Leu312Met Uncertain significance Single submitter
- RNF13 p.Leu96Ser Uncertain significance Single submitter
-
RNF13 p.Lys205Glu
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 73
- RNF13 p.Lys282Glu Uncertain significance Single submitter
- RNF13 p.Met9Val Uncertain significance Single submitter
- RNF13 p.Phe187Ser Uncertain significance Single submitter
- RNF13 p.Pro186Ser Uncertain significance Single submitter
- RNF13 p.Pro73Gln Uncertain significance Single submitter
- RNF13 p.Ser11Pro Uncertain significance Single submitter
- RNF13 p.Ser134Phe Uncertain significance Single submitter
- RNF13 p.Ser298Gly Uncertain significance Single submitter
- RNF13 p.Ser299Asn Uncertain significance Single submitter
- RNF13 p.Ser322Thr Uncertain significance Single submitter
- RNF13 p.Ser352Gly Uncertain significance Single submitter
- RNF13 p.Thr163Ala Uncertain significance Single submitter
- RNF13 p.Thr17Ile Uncertain significance Single submitter
- RNF13 p.Thr306Ala Uncertain significance Single submitter
- RNF13 p.Thr336Ile Uncertain significance Single submitter
- RNF13 p.Thr349Pro Uncertain significance Single submitter
- RNF13 p.Thr349Ser Uncertain significance Single submitter
- RNF13 p.Thr380Pro Uncertain significance Single submitter
- RNF13 p.Tyr116His Uncertain significance Single submitter
- RNF13 p.Tyr237Asn Uncertain significance Single submitter
- RNF13 p.Tyr341Cys Uncertain significance Single submitter
- RNF13 p.Val124Ile Uncertain significance Single submitter
- RNF13 p.Val191Glu Uncertain significance Single submitter
- RNF13 p.Val239Ile Uncertain significance Single submitter
- RNF13 p.Val318Gly Uncertain significance Single submitter
-
RNF13 p.Val363Ile
Uncertain significance
Single submitter
RNF13-related disorder
- RNF13 p.Val85Ile Uncertain significance Single submitter
-
RNF13 p.Asp49Asn
Uncertain significance
No assertion criteria
RNF13-related disorder
Predictors split 34
The independent predictors disagree with each other — read with care.
- RNF13 p.Arg98Gly Uncertain significance Multiple submitters
- RNF13 p.Glu181Gln Uncertain significance Multiple submitters
- RNF13 p.Met202Thr Uncertain significance Multiple submitters
- RNF13 p.Val95Leu Likely benign Multiple submitters
- RNF13 p.Ala25Pro Uncertain significance Single submitter
-
RNF13 p.Arg217Ser
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 73
-
RNF13 p.Asn88Tyr
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 73
- RNF13 p.Asp221Gly Uncertain significance Single submitter
- RNF13 p.Gly151Ala Uncertain significance Single submitter
- RNF13 p.Gly168Val Uncertain significance Single submitter
- RNF13 p.Gly6Arg Uncertain significance Single submitter
- RNF13 p.Ile203Thr Likely benign Single submitter
- RNF13 p.Ile5Arg Uncertain significance Single submitter
- RNF13 p.Lys107Asn Uncertain significance Single submitter
- RNF13 p.Lys220Asn Benign Single submitter
- RNF13 p.Lys232Asn Uncertain significance Single submitter
- RNF13 p.Lys232Glu Uncertain significance Single submitter
- RNF13 p.Lys276Asn Uncertain significance Single submitter
- RNF13 p.Phe201Leu Conflicting Single submitter
- RNF13 p.Phe67Val Uncertain significance Single submitter
- RNF13 p.Pro227Arg Likely benign Single submitter
- RNF13 p.Pro227Ser Uncertain significance Single submitter
- RNF13 p.Ser126Tyr Uncertain significance Single submitter
- RNF13 p.Ser154Pro Uncertain significance Single submitter
-
RNF13 p.Thr13Ile
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 73
- RNF13 p.Thr274Ile Conflicting Single submitter
- RNF13 p.Thr277Asn Uncertain significance Single submitter
- RNF13 p.Thr277Ser Uncertain significance Single submitter
- RNF13 p.Thr306Ile Benign Single submitter
- RNF13 p.Val15Asp Uncertain significance Single submitter
- RNF13 p.Val239Gly Uncertain significance Single submitter
- RNF13 p.Val267Ile Uncertain significance Single submitter
- RNF13 p.Val286Ala Uncertain significance Single submitter
- RNF13 p.Val365Ala Uncertain significance Single submitter
All RNF13 variants
Pathogenic 3
- p.Glu301Ter Single submitter developmental and epileptic encephalopathy, 73
- p.Leu311Ser No assertion criteria developmental and epileptic encephalopathy, 73
- p.Leu312Pro No assertion criteria developmental and epileptic encephalopathy, 73
Pathogenic/Likely pathogenic 1
- p.Asp293_Ser294insTer Multiple submitters developmental and epileptic encephalopathy, 73
Likely pathogenic 4
- p.Glu304Ter Single submitter RNF13-related disorder
- p.Leu311fs Single submitter
- p.Leu311Ter Single submitter
- p.Glu307Ter No assertion criteria developmental and epileptic encephalopathy, 73
Conflicting classifications of pathogenicity 17
- p.Arg373Gln Single submitter ⚠
- p.Asp160Gly Single submitter ⚠
- p.Asp251Glu Single submitter developmental and epileptic encephalopathy, 73 ⚠
- p.Asp295Ter Single submitter developmental and epileptic encephalopathy, 73
- p.Gln368Lys Single submitter ⚠
- p.Glu337Gln Single submitter ⚠
- p.Leu100Phe Single submitter ⚠
- p.Leu30Gln Single submitter ⚠
- p.Leu326Ser Single submitter ⚠
- p.Lys282Met Single submitter ⚠
- p.Phe201Leu Single submitter ⚠
- p.Ser327Leu Single submitter ⚠
- p.Thr274Ile Single submitter ⚠
- p.Thr349Ala Single submitter developmental and epileptic encephalopathy, 73 ⚠
- p.Tyr183Cys Single submitter ⚠
- p.Val15Ile Single submitter ⚠
- p.Val365del Single submitter developmental and epileptic encephalopathy, 73
Benign 19
- c.606+8C>T Multiple submitters
- p.His263= Multiple submitters developmental and epileptic encephalopathy, 73
- p.Ile143Val Multiple submitters
- p.Val173Ile Multiple submitters
- c.322-3C>A Single submitter
- c.501-13del Single submitter
- c.606+14C>T Single submitter
- c.700+4_700+7del Single submitter
- p.Ala114Ser Single submitter
- p.Asn123Ser Single submitter
- p.Asp295Asn Single submitter
- p.Glu236Asp Single submitter
- p.Gly151Arg Single submitter
- p.Ile18Val Single submitter
- p.Lys220Asn Single submitter ⚠
- p.Lys224Glu Single submitter
- p.Pro174Ala Single submitter
- p.Pro269Leu Single submitter
- p.Thr306Ile Single submitter ⚠
Benign/Likely benign 7
- c.701-8G>C Multiple submitters
- c.782-17A>G Multiple submitters
- p.Arg219Cys Multiple submitters
- p.Asp340Asn Multiple submitters
- p.Phe231= Multiple submitters
- p.Tyr164= Multiple submitters
- p.Val363= Multiple submitters
Likely benign 102
- c.700+7A>G Multiple submitters
- p.Arg254= Multiple submitters
- p.Ile94= Multiple submitters
- p.Pro269= Multiple submitters
- p.Val95Leu Multiple submitters ⚠
- c.114+18T>C Single submitter
- c.114+9A>G Single submitter
- c.195+15A>G Single submitter
- c.196-15C>T Single submitter
- c.321+8T>A Single submitter
- c.322-18T>C Single submitter
- c.322-4G>C Single submitter
- c.322-6T>G Single submitter
- c.409+14T>C Single submitter
- c.409+17C>T Single submitter
- c.409+8C>T Single submitter
- c.410-18C>G Single submitter
- c.410-4A>G Single submitter
- c.410-6A>G Single submitter
- c.410-7T>A Single submitter
- c.410-7T>C Single submitter
- c.500+14A>G Single submitter
- c.500+7A>C Single submitter
- c.500+8A>T Single submitter
- c.606+21_606+30del Single submitter
- c.606+7A>C Single submitter
- c.607-13C>G Single submitter
- c.700+17T>C Single submitter
- c.700+6dup Single submitter
- c.701-10_701-9del Single submitter
- c.701-15A>G Single submitter
- c.701-17A>G Single submitter
- c.781+14C>T Single submitter
- c.781+15G>A Single submitter
- c.781+15G>C Single submitter
- c.781+19T>C Single submitter
- c.781+7G>A Single submitter
- c.782-14T>C Single submitter
- c.782-21_782-20del Single submitter
- c.782-8T>C Single submitter
- c.782-8T>G Single submitter
- p.Ala111= Single submitter
- p.Ala118= Single submitter
- p.Ala320= Single submitter
- p.Arg330= Single submitter
- p.Asn135= Single submitter
- p.Asn376= Single submitter
- p.Asp144= Single submitter
- p.Asp238= Single submitter
- p.Asp245= Single submitter
- p.Asp249= Single submitter
- p.Asp344= Single submitter
- p.Asp348= Single submitter
- p.Asp353= Single submitter
- p.Asp362= Single submitter
- p.Cys102= Single submitter
- p.Gln300= Single submitter
- p.Glu246= Single submitter
- p.Glu248_Asp249del Single submitter
- p.Glu33= Single submitter
- p.Glu360= Single submitter
- p.Gly151= Single submitter
- p.Gly290= Single submitter
- p.Gly371= Single submitter
- p.Gly91= Single submitter
- p.Ile145Thr Single submitter
- p.Ile203Thr Single submitter ⚠
- p.Ile255= Single submitter
- p.Ile358Thr Single submitter
- p.Ile5Met Single submitter
- p.Leu129= Single submitter
- p.Leu170= Single submitter
- p.Leu172= Single submitter
- p.Leu184= Single submitter
- p.Leu197= Single submitter
- p.Leu253Phe Single submitter
- p.Leu30= Single submitter
- p.Leu312= Single submitter
- p.Leu326= Single submitter
- p.Lys230Asn Single submitter
- p.Lys232= Single submitter
- p.Lys265= Single submitter
- p.Lys72= Single submitter
- p.Phe176= Single submitter
- p.Pro146= Single submitter
- p.Pro227Arg Single submitter ⚠
- p.Ser126= Single submitter
- p.Ser131= Single submitter
- p.Ser157= Single submitter
- p.Ser298= Single submitter
- p.Ser327= Single submitter
- p.Ser329= Single submitter
- p.Ser331= Single submitter
- p.Ser351= Single submitter
- p.Ser89= Single submitter
- p.Thr13= Single submitter
- p.Thr163= Single submitter
- p.Thr274= Single submitter
- p.Thr309= Single submitter
- p.Val121= Single submitter
- p.Val286= Single submitter
- p.Val364Met Single submitter
Uncertain significance 146
- p.Ala378Val Multiple submitters ⚠
- p.Arg212Thr Multiple submitters developmental and epileptic encephalopathy, 73 ⚠
- p.Arg215Lys Multiple submitters ⚠
- p.Arg219His Multiple submitters ⚠
- p.Arg98Gly Multiple submitters ⚠
- p.Asn346Ser Multiple submitters ⚠
- p.Glu181Gln Multiple submitters ⚠
- p.Glu78_Pro79insAla Multiple submitters
- p.Ile137Val Multiple submitters ⚠
- p.Ile171Phe Multiple submitters ⚠
- p.Leu19Phe Multiple submitters ⚠
- p.Met132Thr Multiple submitters ⚠
- p.Met202Thr Multiple submitters ⚠
- p.Thr92Ser Multiple submitters ⚠
- p.Tyr16His Multiple submitters ⚠
- c.114+5G>T Single submitter
- c.321+1G>A Single submitter
- c.321+1G>C Single submitter
- c.409+15C>G Single submitter
- c.409+23T>C Single submitter
- c.501-17T>G Single submitter
- c.606+1G>T Single submitter
- c.606+9A>G Single submitter
- c.700+1G>A Single submitter
- c.700+5G>A Single submitter
- p.292SD[1] Single submitter
- p.Ala118Thr Single submitter ⚠
- p.Ala12Thr Single submitter ⚠
- p.Ala25Pro Single submitter ⚠
- p.Ala316Pro Single submitter ⚠
- p.Ala320Val Single submitter ⚠
- p.Ala354Gly Single submitter ⚠
- p.Arg212Lys Single submitter ⚠
- p.Arg214Lys Single submitter ⚠
- p.Arg214Thr Single submitter ⚠
- p.Arg217Ser Single submitter developmental and epileptic encephalopathy, 73 ⚠
- p.Arg313Thr Single submitter ⚠
- p.Arg330Cys Single submitter ⚠
- p.Arg330His Single submitter ⚠
- p.Arg373Gly Single submitter ⚠
- p.Arg373Trp Single submitter ⚠
- p.Arg99Gly Single submitter ⚠
- p.Arg99Lys Single submitter
- p.Asn356Ser Single submitter ⚠
- p.Asn359Lys Single submitter ⚠
- p.Asn70Asp Single submitter ⚠
- p.Asn88Tyr Single submitter developmental and epileptic encephalopathy, 73 ⚠
- p.Asp125Asn Single submitter ⚠
- p.Asp128Val Single submitter ⚠
- p.Asp136Asn Single submitter ⚠
- p.Asp221Gly Single submitter ⚠
- p.Asp221Tyr Single submitter ⚠
- p.Asp268Asn Single submitter ⚠
- p.Asp340Ala Single submitter ⚠
- p.Asp345Asn Single submitter ⚠
- p.Asp362Glu Single submitter ⚠
- p.Asp87Gly Single submitter ⚠
- p.Cys266Tyr Single submitter ⚠
- p.Gln14Arg Single submitter ⚠
- p.Gln208Ter Single submitter
- p.Gln300Ter Single submitter developmental and epileptic encephalopathy, 73
- p.Gln321Pro Single submitter ⚠
- p.Gln333His Single submitter ⚠
- p.Glu248Lys Single submitter
- p.Glu301Val Single submitter ⚠
- p.Glu304Asp Single submitter ⚠
- p.Glu307Asp Single submitter ⚠
- p.Glu337Asp Single submitter ⚠
- p.Glu342Gln Single submitter ⚠
- p.Glu347Lys Single submitter ⚠
- p.Gly115Arg Single submitter ⚠
- p.Gly151Ala Single submitter ⚠
- p.Gly168Val Single submitter ⚠
- p.Gly192Ser Single submitter
- p.Gly234Arg Single submitter ⚠
- p.Gly6Arg Single submitter ⚠
- p.His211fs Single submitter
- p.His229fs Single submitter
- p.His260Tyr Single submitter ⚠
- p.His332Leu Single submitter ⚠
- p.Ile120Val Single submitter ⚠
- p.Ile242Val Single submitter
- p.Ile36Val Single submitter developmental and epileptic encephalopathy, 73 ⚠
- p.Ile5Arg Single submitter ⚠
- p.Ile5Val Single submitter ⚠
- p.Ile69Val Single submitter ⚠
- p.Ile80Val Single submitter ⚠
- p.Leu100Val Single submitter ⚠
- p.Leu172fs Single submitter
- p.Leu218His Single submitter ⚠
- p.Leu29Ile Single submitter ⚠
- p.Leu2Gln Single submitter
- p.Leu312Met Single submitter ⚠
- p.Leu96Ser Single submitter ⚠
- p.Lys107Asn Single submitter ⚠
- p.Lys205Glu Single submitter developmental and epileptic encephalopathy, 73 ⚠
- p.Lys232Asn Single submitter ⚠
- p.Lys232Glu Single submitter ⚠
- p.Lys265fs Single submitter
- p.Lys276Asn Single submitter ⚠
- p.Lys282Glu Single submitter ⚠
- p.Lys72fs Single submitter
- p.Met9Val Single submitter ⚠
- p.Phe187Ser Single submitter ⚠
- p.Phe67Val Single submitter ⚠
- p.Pro186Ser Single submitter ⚠
- p.Pro227Ser Single submitter ⚠
- p.Pro310fs Single submitter developmental and epileptic encephalopathy, 73
- p.Pro73Gln Single submitter ⚠
- p.Ser11Pro Single submitter ⚠
- p.Ser126Tyr Single submitter ⚠
- p.Ser134Phe Single submitter ⚠
- p.Ser154Pro Single submitter ⚠
- p.Ser292Ter Single submitter
- p.Ser298Gly Single submitter ⚠
- p.Ser299Asn Single submitter ⚠
- p.Ser317fs Single submitter developmental and epileptic encephalopathy, 73
- p.Ser322Thr Single submitter ⚠
- p.Ser352Gly Single submitter ⚠
- p.Thr13Ile Single submitter developmental and epileptic encephalopathy, 73 ⚠
- p.Thr163Ala Single submitter ⚠
- p.Thr17Ile Single submitter ⚠
- p.Thr277Asn Single submitter ⚠
- p.Thr277Ser Single submitter ⚠
- p.Thr306Ala Single submitter ⚠
- p.Thr336Ile Single submitter ⚠
- p.Thr349Pro Single submitter ⚠
- p.Thr349Ser Single submitter ⚠
- p.Thr380Pro Single submitter ⚠
- p.Tyr116His Single submitter ⚠
- p.Tyr164fs Single submitter
- p.Tyr237Asn Single submitter ⚠
- p.Tyr341Cys Single submitter ⚠
- p.Val124Ile Single submitter ⚠
- p.Val15Asp Single submitter ⚠
- p.Val191Glu Single submitter ⚠
- p.Val239Gly Single submitter ⚠
- p.Val239Ile Single submitter ⚠
- p.Val267Ile Single submitter ⚠
- p.Val285fs Single submitter
- p.Val286Ala Single submitter ⚠
- p.Val318Gly Single submitter ⚠
- p.Val363Ile Single submitter RNF13-related disorder ⚠
- p.Val365Ala Single submitter ⚠
- p.Val85Ile Single submitter ⚠
- p.Asp49Asn No assertion criteria RNF13-related disorder ⚠