RNF43 — 1447 ClinVar variants

All ClinVar germline RNF43 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 809 flagged for review →

21 Pathogenic · 2 Pathogenic/Likely pathogenic · 10 Likely pathogenic · 102 Conflicting · 48 Benign · 71 Benign/Likely benign · 365 Likely benign · 828 Uncertain significance

Full RNF43 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 809

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 63

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 635

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 635

Predictors split 111

The independent predictors disagree with each other — read with care.

All RNF43 variants

Pathogenic 21

  • p.Arg117fs Single submitter sessile serrated polyposis cancer syndrome
  • p.Arg404fs Single submitter sessile serrated polyposis cancer syndrome
  • p.Arg437fs Single submitter sessile serrated polyposis cancer syndrome
  • p.Gln22Ter Single submitter sessile serrated polyposis cancer syndrome
  • p.Gln233Ter Single submitter sessile serrated polyposis cancer syndrome
  • p.Gln242Ter Single submitter sessile serrated polyposis cancer syndrome
  • p.Gln305Ter Single submitter sessile serrated polyposis cancer syndrome
  • p.Gln333Ter Single submitter sessile serrated polyposis cancer syndrome
  • p.Glu43Ter Single submitter sessile serrated polyposis cancer syndrome
  • p.Gly540fs Single submitter sessile serrated polyposis cancer syndrome
  • p.Gly666fs Single submitter sessile serrated polyposis cancer syndrome
  • p.His86fs Single submitter sessile serrated polyposis cancer syndrome
  • p.Leu339fs Single submitter sessile serrated polyposis cancer syndrome
  • p.Leu99fs Single submitter
  • p.Pro462fs Single submitter sessile serrated polyposis cancer syndrome
  • p.Ser378fs Single submitter sessile serrated polyposis cancer syndrome
  • p.Ser419fs Single submitter sessile serrated polyposis cancer syndrome
  • p.Ser468Ter Single submitter sessile serrated polyposis cancer syndrome
  • p.Ser478fs Single submitter sessile serrated polyposis cancer syndrome
  • p.Trp564Ter Single submitter sessile serrated polyposis cancer syndrome
  • p.Tyr550Ter Single submitter sessile serrated polyposis cancer syndrome

Pathogenic/Likely pathogenic 2

  • p.Arg337Ter Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Gly659fs Multiple submitters sessile serrated polyposis cancer syndrome

Likely pathogenic 10

  • c.2308+1G>A Single submitter sessile serrated polyposis cancer syndrome
  • c.252+1G>T Single submitter sessile serrated polyposis cancer syndrome
  • c.253-2A>C Single submitter sessile serrated polyposis cancer syndrome
  • c.582+1G>A Single submitter sessile serrated polyposis cancer syndrome
  • c.582+1G>C Single submitter sessile serrated polyposis cancer syndrome
  • p.Arg650fs Single submitter sessile serrated polyposis cancer syndrome
  • p.Arg657fs Single submitter sessile serrated polyposis cancer syndrome
  • p.Leu642fs Single submitter sessile serrated polyposis cancer syndrome
  • p.Tyr510Ter Single submitter sessile serrated polyposis cancer syndrome
  • c.2308+1G>T No assertion criteria sessile serrated polyposis cancer syndrome

Conflicting classifications of pathogenicity 102

Benign 48

  • c.2309-29C>T Multiple submitters
  • c.582+110C>T Multiple submitters
  • c.582+162C>T Multiple submitters
  • c.582+94C>A Multiple submitters
  • c.849+102A>C Multiple submitters
  • c.-385-51T>A Multiple submitters
  • p.Ala365Thr Multiple submitters hereditary neoplastic syndrome
  • p.Arg117His Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Arg221Gln Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Arg657Pro Multiple submitters hyperplastic polyposis syndrome
  • p.Gly336Asp Multiple submitters
  • p.Ile47Val Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Leu418Met Multiple submitters hereditary neoplastic syndrome
  • p.Pro686Arg Multiple submitters hereditary neoplastic syndrome
  • c.375+17C>T Single submitter
  • c.375+220T>C Single submitter
  • p.Ala10= Single submitter sessile serrated polyposis cancer syndrome
  • p.Ala136= Single submitter sessile serrated polyposis cancer syndrome
  • p.Ala148= Single submitter sessile serrated polyposis cancer syndrome
  • p.Arg219= Single submitter sessile serrated polyposis cancer syndrome
  • p.Arg228= Single submitter sessile serrated polyposis cancer syndrome
  • p.Arg27= Single submitter sessile serrated polyposis cancer syndrome
  • p.Asn167= Single submitter sessile serrated polyposis cancer syndrome
  • p.Asp196= Single submitter sessile serrated polyposis cancer syndrome
  • p.Asp95= Single submitter sessile serrated polyposis cancer syndrome
  • p.Cys266= Single submitter sessile serrated polyposis cancer syndrome
  • p.Glu100= Single submitter sessile serrated polyposis cancer syndrome
  • p.Glu149= Single submitter sessile serrated polyposis cancer syndrome
  • p.Glu37= Single submitter sessile serrated polyposis cancer syndrome
  • p.Glu39= Single submitter sessile serrated polyposis cancer syndrome
  • p.Gly3= Single submitter sessile serrated polyposis cancer syndrome
  • p.Ile201= Single submitter sessile serrated polyposis cancer syndrome
  • p.Ile51= Single submitter sessile serrated polyposis cancer syndrome
  • p.Leu109= Single submitter sessile serrated polyposis cancer syndrome
  • p.Leu138= Single submitter sessile serrated polyposis cancer syndrome
  • p.Leu163= Single submitter sessile serrated polyposis cancer syndrome
  • p.Leu243= Single submitter sessile serrated polyposis cancer syndrome
  • p.Leu90= Single submitter sessile serrated polyposis cancer syndrome
  • p.Leu99= Single submitter sessile serrated polyposis cancer syndrome
  • p.Lys189= Single submitter sessile serrated polyposis cancer syndrome
  • p.Phe139= Single submitter sessile serrated polyposis cancer syndrome
  • p.Pro270= Single submitter sessile serrated polyposis cancer syndrome
  • p.Ser265= Single submitter sessile serrated polyposis cancer syndrome
  • p.Thr142= Single submitter sessile serrated polyposis cancer syndrome
  • p.Thr204= Single submitter sessile serrated polyposis cancer syndrome
  • p.Tyr248= Single submitter sessile serrated polyposis cancer syndrome
  • p.Val137= Single submitter sessile serrated polyposis cancer syndrome
  • p.Val184= Single submitter sessile serrated polyposis cancer syndrome

Benign/Likely benign 71

  • c.2309-15G>C Multiple submitters hereditary neoplastic syndrome
  • c.582+30C>T Multiple submitters
  • c.583-12C>T Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ala11= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ala115= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ala129= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ala147= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ala193= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ala23= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ala239= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ala35= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ala46= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ala629Thr Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ala70= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Arg117= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Arg221= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Arg223= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Arg235= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Arg343His Multiple submitters hereditary neoplastic syndrome
  • p.Arg529Trp Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Asn179= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Asp140= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Asp168= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Asp628= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Asp96= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Cys252= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Cys272= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Gln242= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Gly257= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Gly263= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Gly754Ala Multiple submitters sessile serrated polyposis cancer syndrome
  • p.His183= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ile106= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ile212= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Leu120= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Leu157= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Leu16= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Leu172= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Leu32= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Leu88= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Lys108= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Lys181= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Lys60= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Pro112= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Pro14= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Pro154= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Pro160= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Pro192= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Pro231= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Pro231Leu Multiple submitters hereditary neoplastic syndrome
  • p.Pro377= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Pro434= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Pro756= Multiple submitters
  • p.Pro760= Multiple submitters hereditary neoplastic syndrome
  • p.Pro87= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ser105= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ser135= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ser2= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ser216= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ser267= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ser41= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Ser607= Multiple submitters hyperplastic polyposis syndrome
  • p.Ser85= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Thr158= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Thr58= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Val162= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Val176= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Val199= Multiple submitters hyperplastic polyposis syndrome
  • p.Val205= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Val211= Multiple submitters sessile serrated polyposis cancer syndrome
  • p.Val68= Multiple submitters sessile serrated polyposis cancer syndrome

Likely benign 365

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 828

Showing the top 300 by review status; the full set is in the sitemap.