ROBO3 — 420 ClinVar variants

All ClinVar germline ROBO3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 240 flagged for review →

15 Pathogenic · 1 Pathogenic/Likely pathogenic · 27 Likely pathogenic · 20 Conflicting · 24 Benign · 5 Benign/Likely benign · 56 Likely benign · 272 Uncertain significance

Full ROBO3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 240

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 2

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 10

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 187

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 187

Predictors split 41

The independent predictors disagree with each other — read with care.

All ROBO3 variants

Pathogenic 15

  • c.2770_2779+21del Multiple submitters conjugate gaze palsy
  • c.767-2_778del Single submitter
  • p.Arg191fs Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Gln267Ter Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Leu1156fs Single submitter
  • p.Trp291Ter Single submitter
  • p.Trp662Ter Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Trp809Ter Single submitter
  • c.2073+1G>A No assertion criteria gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Gln773fs No assertion criteria gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Gln773Ter No assertion criteria gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Glu1109fs No assertion criteria gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Gly456Ter No assertion criteria gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Thr615fs No assertion criteria gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Val629fs No assertion criteria gaze palsy, familial horizontal, with progressive scoliosis 1

Pathogenic/Likely pathogenic 1

  • c.767-1G>A Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1

Likely pathogenic 27

  • p.Arg245Trp Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Arg703Pro Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Ile95Thr Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Pro771Leu Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1 ⚠
  • c.1330+2T>C Single submitter ROBO3-related disorder
  • c.487+1G>C Single submitter ROBO3-related disorder
  • p.Ala934fs Single submitter ROBO3-related disorder
  • p.Arg112Pro Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Arg1138fs Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Arg135fs Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Arg92Ter Single submitter ROBO3-related disorder
  • p.Asp72Tyr Single submitter ROBO3-related disorder
  • p.Gln1165Ter Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Gln1313Ter Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Gln386His Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Glu319Lys Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1 ⚠
  • p.Gly139Val Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Gly361Glu Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Ile441Arg Single submitter
  • p.Ile66Leu Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Leu5Pro Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1 ⚠
  • p.Leu905fs Single submitter ROBO3-related disorder
  • p.Pro478Leu Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Pro91Ser Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Ser705Pro Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1 ⚠
  • p.Trp484Arg Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Trp576Arg Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1

Conflicting classifications of pathogenicity 20

  • p.Ala1279Val Single submitter Inborn genetic diseases ⚠
  • p.Ala1304Val Single submitter Inborn genetic diseases ⚠
  • p.Ala1307= Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Ala584= Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Arg1260= Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Arg213= Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Arg674Cys Single submitter Inborn genetic diseases ⚠
  • p.Asp284Asn Single submitter Inborn genetic diseases ⚠
  • p.Gln1175= Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Gln460Arg Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1 ⚠
  • p.Gly770= Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Gly998Val Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1 ⚠
  • p.Met1194Thr Single submitter Inborn genetic diseases ⚠
  • p.Met514Ile Single submitter Inborn genetic diseases ⚠
  • p.Ser1189= Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Ser1366= Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Ser1372Arg Single submitter Inborn genetic diseases ⚠
  • p.Thr323Met Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1 ⚠
  • p.Thr398= Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Val1308Met Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1 ⚠

Benign 24

  • c.1331-3C>T Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • c.1331-49C>T Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • c.4150-8C>T Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • c.766+24T>C Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Ala1062Thr Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Ala242= Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Ala776= Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Arg1198His Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Arg416His Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Arg539Trp Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Cys368= Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Gly608= Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Gly618Ser Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1 ⚠
  • p.Pro1100= Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Pro189= Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Pro397Thr Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Val423Met Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1 ⚠
  • c.2074-3C>T Single submitter
  • c.-120G>C Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.1363RS[2] Single submitter gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Arg1367fs Single submitter
  • p.Gln1233His Single submitter
  • p.Leu118= Single submitter
  • p.Pro1385Leu Single submitter

Benign/Likely benign 5

  • c.488-14A>C Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Ala997= Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Asp495= Multiple submitters
  • p.Leu574= Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1
  • p.Pro1274= Multiple submitters gaze palsy, familial horizontal, with progressive scoliosis 1

Likely benign 56

Uncertain significance 272