RPL10 — 84 ClinVar variants
All ClinVar germline RPL10 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 32 flagged for review →
5 Pathogenic · 4 Likely pathogenic · 1 Conflicting · 5 Benign · 2 Benign/Likely benign · 20 Likely benign · 47 Uncertain significance
Full RPL10 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 32
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 1
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
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RPL10 p.Arg189Trp
Likely pathogenic
Single submitter
intellectual disability, X-linked, syndromic, 35
Predictors lean, ClinVar uncertain 21
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
RPL10 p.Arg116Gln
Uncertain significance
Multiple submitters
intellectual disability, X-linked, syndromic, 35
-
RPL10 p.Arg162Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
RPL10 p.Asp193Gly
Uncertain significance
Multiple submitters
intellectual disability, X-linked, syndromic, 35
-
RPL10 p.Ser79Thr
Uncertain significance
Multiple submitters
intellectual disability, X-linked, syndromic, 35
- RPL10 p.Ala41Thr Uncertain significance Single submitter
-
RPL10 p.Ala72Thr
Uncertain significance
Single submitter
intellectual disability, X-linked, syndromic, 35
-
RPL10 p.Arg32Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- RPL10 p.Arg88Trp Uncertain significance Single submitter
- RPL10 p.Arg90Trp Uncertain significance Single submitter
-
RPL10 p.Asp44Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
RPL10 p.Asp55Gly
Uncertain significance
Single submitter
intellectual disability, X-linked, syndromic, 35
-
RPL10 p.Gly196Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- RPL10 p.Gly84Asp Uncertain significance Single submitter
- RPL10 p.Leu36Gln Uncertain significance Single submitter
- RPL10 p.Leu48Phe Uncertain significance Single submitter
- RPL10 p.Lys156Thr Uncertain significance Single submitter
-
RPL10 p.Lys188Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
RPL10 p.Pro160Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
RPL10 p.Pro47Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
RPL10 p.Tyr75Phe
Uncertain significance
Single submitter
Inborn genetic diseases
- RPL10 p.Val148Ala Uncertain significance Single submitter
Predictors split 10
The independent predictors disagree with each other — read with care.
-
RPL10 p.Asn73Ser
Uncertain significance
Multiple submitters
intellectual disability, X-linked, syndromic, 35
-
RPL10 p.His213Gln
Uncertain significance
Multiple submitters
autism, susceptibility to, X-linked 5
-
RPL10 p.Arg210Gln
Benign
Single submitter
Inborn genetic diseases
- RPL10 p.Arg210Trp Benign Single submitter
-
RPL10 p.Asn14Lys
Likely benign
Single submitter
Inborn genetic diseases
-
RPL10 p.Asp179Asn
Uncertain significance
Single submitter
intellectual disability, X-linked, syndromic, 35
-
RPL10 p.Glu187Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- RPL10 p.Ile167Val Uncertain significance Single submitter
- RPL10 p.Met184Leu Uncertain significance Single submitter
-
RPL10 p.Asn73Thr
Uncertain significance
No assertion criteria
intellectual disability, X-linked, syndromic, 35
All RPL10 variants
Pathogenic 5
- p.His95Tyr Single submitter autism, susceptibility to, X-linked 5
- p.Lys78Glu Single submitter intellectual disability, X-linked, syndromic, 35
- p.Ala151Val No assertion criteria intellectual disability, X-linked, syndromic, 35
- p.Ala64Val No assertion criteria intellectual disability, X-linked, syndromic, 35
- p.Gly161Ser No assertion criteria intellectual disability, X-linked, syndromic, 35
Likely pathogenic 4
- p.Arg32Leu Multiple submitters
- p.Arg189Trp Single submitter intellectual disability, X-linked, syndromic, 35 ⚠
- p.Arg3His Single submitter
- p.Gly161Asp Single submitter
Conflicting classifications of pathogenicity 1
- p.Ile97= Single submitter Inborn genetic diseases
Benign 5
- c.23+9T>A Multiple submitters
- p.Ser202= Multiple submitters Inborn genetic diseases
- p.Arg210Gln Single submitter Inborn genetic diseases ⚠
- p.Arg210Trp Single submitter ⚠
- p.Ser202Asn Single submitter
Benign/Likely benign 2
Likely benign 20
- c.190+4dup Single submitter
- c.24-10T>C Single submitter
- c.329+12C>A Single submitter
- c.330-7A>G Single submitter
- c.330-8C>T Single submitter
- c.330-9C>T Single submitter
- c.493-15T>C Single submitter
- c.82+8G>C Single submitter intellectual disability
- c.83-19A>G Single submitter
- c.*163C>T Single submitter
- c.*1G>A Single submitter
- c.*23C>T Single submitter
- c.*53C>T Single submitter
- p.Arg210= Single submitter
- p.Arg69= Single submitter
- p.Arg88= Single submitter Inborn genetic diseases
- p.Asn14Lys Single submitter Inborn genetic diseases ⚠
- p.Gly84= Single submitter Inborn genetic diseases
- p.His95= Single submitter
- p.Pro5= Single submitter
Uncertain significance 47
- p.Arg116Gln Multiple submitters intellectual disability, X-linked, syndromic, 35 ⚠
- p.Arg162Cys Multiple submitters Inborn genetic diseases ⚠
- p.Asn73Ser Multiple submitters intellectual disability, X-linked, syndromic, 35 ⚠
- p.Asp193Gly Multiple submitters intellectual disability, X-linked, syndromic, 35 ⚠
- p.His213Gln Multiple submitters autism, susceptibility to, X-linked 5 ⚠
- p.Ser79Thr Multiple submitters intellectual disability, X-linked, syndromic, 35 ⚠
- c.190+7C>T Single submitter
- c.191-10C>T Single submitter
- c.191-5C>T Single submitter intellectual disability, X-linked, syndromic, 35
- c.24-13C>T Single submitter
- c.24-8C>G Single submitter
- c.329+6C>G Single submitter RPL10-related disorder
- c.492+4T>A Single submitter
- c.-4C>T Single submitter
- c.*101C>A Single submitter
- c.*111C>G Single submitter
- c.*1204C>G Single submitter
- c.*126C>T Single submitter
- c.*156A>G Single submitter
- c.*71_*72del Single submitter
- c.*78C>T Single submitter
- p.Ala41Thr Single submitter ⚠
- p.Ala72Thr Single submitter intellectual disability, X-linked, syndromic, 35 ⚠
- p.Arg32Cys Single submitter Inborn genetic diseases ⚠
- p.Arg88Trp Single submitter ⚠
- p.Arg90Trp Single submitter ⚠
- p.Asp179Asn Single submitter intellectual disability, X-linked, syndromic, 35 ⚠
- p.Asp44Tyr Single submitter Inborn genetic diseases ⚠
- p.Asp55Gly Single submitter intellectual disability, X-linked, syndromic, 35 ⚠
- p.Glu187Asp Single submitter Inborn genetic diseases ⚠
- p.Gly196Glu Single submitter Inborn genetic diseases ⚠
- p.Gly84Asp Single submitter ⚠
- p.Ile167Val Single submitter ⚠
- p.Leu36Gln Single submitter ⚠
- p.Leu48Phe Single submitter ⚠
- p.Lys156Thr Single submitter ⚠
- p.Lys188Arg Single submitter Inborn genetic diseases ⚠
- p.Met136Val Single submitter
- p.Met184Leu Single submitter ⚠
- p.Pro160Arg Single submitter Inborn genetic diseases ⚠
- p.Pro192Leu Single submitter Inborn genetic diseases
- p.Pro47Leu Single submitter Inborn genetic diseases ⚠
- p.Ser214= Single submitter
- p.Tyr75Phe Single submitter Inborn genetic diseases ⚠
- p.Val148Ala Single submitter ⚠
- c.*87C>G No assertion criteria RPL10-related disorder
- p.Asn73Thr No assertion criteria intellectual disability, X-linked, syndromic, 35 ⚠