RYR3 — 1945 ClinVar variants

All ClinVar germline RYR3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 621 flagged for review →

1 Pathogenic · 51 Conflicting · 94 Benign · 36 Benign/Likely benign · 566 Likely benign · 1197 Uncertain significance

Full RYR3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 621

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 24

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 461

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 461

Predictors split 135

The independent predictors disagree with each other — read with care.

All RYR3 variants

Pathogenic 1

Conflicting classifications of pathogenicity 51

Benign 94

  • c.10600-20A>G Multiple submitters Epileptic encephalopathy
  • c.10816-9del Multiple submitters Epileptic encephalopathy
  • c.10995+18C>T Multiple submitters Epileptic encephalopathy
  • c.10995+19G>A Multiple submitters Epileptic encephalopathy
  • c.11072+8C>T Multiple submitters Epileptic encephalopathy
  • c.13210-13C>G Multiple submitters Epileptic encephalopathy
  • c.13498-13C>T Multiple submitters Epileptic encephalopathy
  • c.14142+27_14142+46del Multiple submitters Epileptic encephalopathy
  • c.14300-19T>A Multiple submitters Epileptic encephalopathy
  • c.14364+14A>G Multiple submitters Epileptic encephalopathy
  • c.1922+16C>T Multiple submitters Epileptic encephalopathy
  • c.2164+8C>T Multiple submitters Epileptic encephalopathy
  • c.2575-10T>C Multiple submitters Epileptic encephalopathy
  • c.279+11G>A Multiple submitters Epileptic encephalopathy
  • c.280-7C>G Multiple submitters Epileptic encephalopathy
  • c.4309-11T>C Multiple submitters Epileptic encephalopathy
  • c.434-5T>C Multiple submitters Epileptic encephalopathy
  • c.4396-10C>T Multiple submitters Epileptic encephalopathy
  • c.4622+14C>T Multiple submitters Epileptic encephalopathy
  • c.6134+9T>C Multiple submitters Epileptic encephalopathy
  • c.6380-15C>G Multiple submitters Epileptic encephalopathy
  • c.6620-3C>T Multiple submitters Epileptic encephalopathy
  • c.7516-8C>T Multiple submitters Epileptic encephalopathy
  • c.8136+9C>G Multiple submitters Epileptic encephalopathy
  • c.815+9A>G Multiple submitters Epileptic encephalopathy
  • c.*839A>G Multiple submitters Epileptic encephalopathy
  • p.Ala2354= Multiple submitters Epileptic encephalopathy
  • p.Ala3627= Multiple submitters Epileptic encephalopathy
  • p.Ala368= Multiple submitters Epileptic encephalopathy
  • p.Arg1641Cys Multiple submitters Epileptic encephalopathy
  • p.Arg285= Multiple submitters Epileptic encephalopathy
  • p.Arg4043= Multiple submitters Epileptic encephalopathy
  • p.Arg4478= Multiple submitters Epileptic encephalopathy
  • p.Asn2148= Multiple submitters Epileptic encephalopathy
  • p.Asp1678Gly Multiple submitters Epileptic encephalopathy
  • p.Asp3573= Multiple submitters Epileptic encephalopathy
  • p.Asp370= Multiple submitters Epileptic encephalopathy
  • p.Asp4706= Multiple submitters Epileptic encephalopathy
  • p.Gln401= Multiple submitters Epileptic encephalopathy
  • p.Glu1767Lys Multiple submitters Epileptic encephalopathy
  • p.Glu4441del Multiple submitters Epileptic encephalopathy
  • p.Glu4455= Multiple submitters Epileptic encephalopathy
  • p.Glu4704Lys Multiple submitters Epileptic encephalopathy
  • p.Gly2239= Multiple submitters Epileptic encephalopathy
  • p.Gly2270Glu Multiple submitters Epileptic encephalopathy
  • p.Gly2544= Multiple submitters Epileptic encephalopathy
  • p.Ile358Thr Multiple submitters Epileptic encephalopathy
  • p.Ile731Val Multiple submitters Epileptic encephalopathy
  • p.Ile834= Multiple submitters Epileptic encephalopathy
  • p.Leu1657= Multiple submitters Epileptic encephalopathy
  • p.Leu2563= Multiple submitters Epileptic encephalopathy
  • p.Leu801= Multiple submitters Epileptic encephalopathy
  • p.Lys3426= Multiple submitters Epileptic encephalopathy
  • p.Phe3604= Multiple submitters Epileptic encephalopathy
  • p.Phe4756= Multiple submitters Epileptic encephalopathy
  • p.Ser2881Thr Multiple submitters Epileptic encephalopathy
  • p.Ser423= Multiple submitters Epileptic encephalopathy
  • p.Thr2585= Multiple submitters Epileptic encephalopathy
  • p.Thr3229Met Multiple submitters Epileptic encephalopathy
  • p.Tyr2527= Multiple submitters Epileptic encephalopathy
  • p.Tyr3272= Multiple submitters Epileptic encephalopathy
  • p.Val4172= Multiple submitters Epileptic encephalopathy
  • p.Val494Ile Multiple submitters Epileptic encephalopathy
  • p.Val610Ile Multiple submitters Epileptic encephalopathy
  • c.10197+10C>T Single submitter Epileptic encephalopathy
  • c.10759-8A>G Single submitter Epileptic encephalopathy
  • c.1146+3G>T Single submitter Epileptic encephalopathy
  • c.13297-20G>A Single submitter Epileptic encephalopathy
  • c.1574-12C>T Single submitter Epileptic encephalopathy
  • c.2784-10T>G Single submitter Epileptic encephalopathy
  • c.2867+18del Single submitter Epileptic encephalopathy
  • c.2867+18dup Single submitter Epileptic encephalopathy
  • c.3557-7T>G Single submitter Epileptic encephalopathy
  • c.4308+8C>T Single submitter Epileptic encephalopathy
  • c.4623-9T>C Single submitter Epileptic encephalopathy
  • c.52-8_52-6del Single submitter Epileptic encephalopathy
  • c.5419-8C>G Single submitter Epileptic encephalopathy
  • c.5620-5C>G Single submitter Epileptic encephalopathy
  • c.6484-8T>A Single submitter Epileptic encephalopathy
  • c.8400-5C>T Single submitter Epileptic encephalopathy
  • c.8756-19A>G Single submitter Epileptic encephalopathy
  • c.9831-8G>C Single submitter Epileptic encephalopathy
  • p.Asn4390Asp Single submitter Epileptic encephalopathy
  • p.His591= Single submitter Epileptic encephalopathy
  • p.Ile3000Leu Single submitter Epileptic encephalopathy
  • p.Ile3000Val Single submitter Epileptic encephalopathy
  • p.Ile432Ser Single submitter Epileptic encephalopathy
  • p.Leu4646= Single submitter Epileptic encephalopathy
  • p.Lys382= Single submitter Epileptic encephalopathy
  • p.Lys4790= Single submitter Epileptic encephalopathy
  • p.Pro2768= Single submitter Epileptic encephalopathy
  • p.Pro4384Leu Single submitter Epileptic encephalopathy ⚠
  • p.Ser2706Ile Single submitter Epileptic encephalopathy
  • p.Ser3523= Single submitter Epileptic encephalopathy

Benign/Likely benign 36

  • c.10816-9T>C Multiple submitters Epileptic encephalopathy
  • c.11073-8A>G Multiple submitters Epileptic encephalopathy
  • c.11464-8C>A Multiple submitters Epileptic encephalopathy
  • c.13497+6C>T Multiple submitters Epileptic encephalopathy
  • c.1437+8G>A Multiple submitters Epileptic encephalopathy
  • c.1788+10G>C Multiple submitters Epileptic encephalopathy
  • c.2574+3A>C Multiple submitters Epileptic encephalopathy
  • c.6619+7C>G Multiple submitters Epileptic encephalopathy
  • p.Ala1116= Multiple submitters Epileptic encephalopathy
  • p.Ala1828= Multiple submitters Epileptic encephalopathy
  • p.Ala4389= Multiple submitters Epileptic encephalopathy
  • p.Arg1987= Multiple submitters Epileptic encephalopathy
  • p.Arg2852His Multiple submitters Epileptic encephalopathy
  • p.Arg3048Leu Multiple submitters Epileptic encephalopathy
  • p.Asn2042Ser Multiple submitters Epileptic encephalopathy
  • p.Asn2206Thr Multiple submitters Epileptic encephalopathy
  • p.Asn3849His Multiple submitters Epileptic encephalopathy
  • p.Asn426Ser Multiple submitters Epileptic encephalopathy
  • p.Asn898Ser Multiple submitters Epileptic encephalopathy
  • p.Asp1491= Multiple submitters Epileptic encephalopathy
  • p.Asp3253= Multiple submitters Epileptic encephalopathy
  • p.Glu767= Multiple submitters Epileptic encephalopathy
  • p.Gly1432= Multiple submitters Epileptic encephalopathy
  • p.Leu1564= Multiple submitters Epileptic encephalopathy
  • p.Leu3291= Multiple submitters Epileptic encephalopathy
  • p.Met3641Val Multiple submitters Epileptic encephalopathy
  • p.Phe1507= Multiple submitters Epileptic encephalopathy
  • p.Pro1537= Multiple submitters Epileptic encephalopathy
  • p.Pro3085Arg Multiple submitters Epileptic encephalopathy
  • p.Ser2609= Multiple submitters Epileptic encephalopathy
  • p.Ser738= Multiple submitters Epileptic encephalopathy
  • p.Thr207= Multiple submitters Epileptic encephalopathy
  • p.Thr3732= Multiple submitters Epileptic encephalopathy
  • p.Thr3763= Multiple submitters Epileptic encephalopathy
  • p.Tyr1607= Multiple submitters Epileptic encephalopathy
  • p.Tyr2827= Multiple submitters Epileptic encephalopathy

Likely benign 566

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 1197

Showing the top 300 by review status; the full set is in the sitemap.