SAMD9L — 2519 ClinVar variants

All ClinVar germline SAMD9L variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 1635 flagged for review →

4 Pathogenic · 1 Pathogenic/Likely pathogenic · 16 Likely pathogenic · 100 Conflicting · 4 Benign · 36 Benign/Likely benign · 634 Likely benign · 1724 Uncertain significance

Full SAMD9L gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 1635

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 78

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 1294

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 1294

Predictors split 250

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 250

All SAMD9L variants

Pathogenic 4

Pathogenic/Likely pathogenic 1

Likely pathogenic 16

Conflicting classifications of pathogenicity 100

Benign 4

Benign/Likely benign 36

Likely benign 634

Showing the top 300 by review status; the full set is in the sitemap.

  • c.*99C>T Multiple submitters
  • p.Ala1113= Multiple submitters Inborn genetic diseases
  • p.Ala1156= Multiple submitters Inborn genetic diseases
  • p.Ala1365= Multiple submitters Inborn genetic diseases
  • p.Ala201= Multiple submitters Inborn genetic diseases
  • p.Ala354= Multiple submitters Inborn genetic diseases
  • p.Ala993= Multiple submitters Inborn genetic diseases
  • p.Arg1161= Multiple submitters Inborn genetic diseases
  • p.Arg1187= Multiple submitters Inborn genetic diseases
  • p.Arg1188= Multiple submitters Inborn genetic diseases
  • p.Arg1301= Multiple submitters Inborn genetic diseases
  • p.Arg1339= Multiple submitters Inborn genetic diseases
  • p.Arg176= Multiple submitters Inborn genetic diseases
  • p.Asn1014= Multiple submitters Inborn genetic diseases
  • p.Asn1019= Multiple submitters Inborn genetic diseases
  • p.Asn1147= Multiple submitters Inborn genetic diseases
  • p.Asn1221= Multiple submitters
  • p.Asn1516= Multiple submitters Inborn genetic diseases
  • p.Asn405= Multiple submitters Inborn genetic diseases
  • p.Asn499= Multiple submitters Inborn genetic diseases
  • p.Asn613= Multiple submitters Inborn genetic diseases
  • p.Asn618= Multiple submitters Inborn genetic diseases
  • p.Asn73= Multiple submitters Inborn genetic diseases
  • p.Asn810= Multiple submitters Inborn genetic diseases
  • p.Asn882= Multiple submitters Inborn genetic diseases
  • p.Asp1049= Multiple submitters Inborn genetic diseases
  • p.Asp1066= Multiple submitters Inborn genetic diseases
  • p.Asp1098= Multiple submitters Inborn genetic diseases
  • p.Asp1171= Multiple submitters Inborn genetic diseases
  • p.Asp194= Multiple submitters Inborn genetic diseases
  • p.Asp308= Multiple submitters Inborn genetic diseases
  • p.Asp318= Multiple submitters Inborn genetic diseases
  • p.Asp330= Multiple submitters Inborn genetic diseases
  • p.Cys1267= Multiple submitters Inborn genetic diseases
  • p.Cys1431= Multiple submitters Inborn genetic diseases
  • p.Cys163= Multiple submitters Inborn genetic diseases
  • p.Cys579= Multiple submitters Inborn genetic diseases
  • p.Cys724= Multiple submitters Inborn genetic diseases
  • p.Cys883= Multiple submitters Inborn genetic diseases
  • p.Gln1183= Multiple submitters Inborn genetic diseases
  • p.Gln1261= Multiple submitters Inborn genetic diseases
  • p.Gln131= Multiple submitters Inborn genetic diseases
  • p.Gln1321= Multiple submitters Inborn genetic diseases
  • p.Gln1324= Multiple submitters Inborn genetic diseases
  • p.Gln1462= Multiple submitters Inborn genetic diseases
  • p.Gln491= Multiple submitters Inborn genetic diseases
  • p.Glu1018= Multiple submitters Inborn genetic diseases
  • p.Glu1305= Multiple submitters Inborn genetic diseases
  • p.Glu1319= Multiple submitters Inborn genetic diseases
  • p.Glu1326= Multiple submitters Inborn genetic diseases
  • p.Glu1412= Multiple submitters Inborn genetic diseases
  • p.Glu1494= Multiple submitters Inborn genetic diseases
  • p.Glu276= Multiple submitters Inborn genetic diseases
  • p.Glu286= Multiple submitters Inborn genetic diseases
  • p.Glu383Lys Multiple submitters Inborn genetic diseases
  • p.Glu474= Multiple submitters Inborn genetic diseases
  • p.Glu975= Multiple submitters Inborn genetic diseases
  • p.Gly1510= Multiple submitters Inborn genetic diseases
  • p.Gly1559= Multiple submitters Inborn genetic diseases
  • p.Gly59= Multiple submitters Inborn genetic diseases
  • p.Gly639= Multiple submitters Inborn genetic diseases
  • p.His1218= Multiple submitters Inborn genetic diseases
  • p.His263= Multiple submitters Inborn genetic diseases
  • p.His686= Multiple submitters Inborn genetic diseases
  • p.Ile129= Multiple submitters Inborn genetic diseases
  • p.Ile1487= Multiple submitters Inborn genetic diseases
  • p.Ile327= Multiple submitters Inborn genetic diseases
  • p.Ile327Val Multiple submitters
  • p.Ile418= Multiple submitters
  • p.Ile586= Multiple submitters Inborn genetic diseases
  • p.Ile658= Multiple submitters Inborn genetic diseases
  • p.Ile669= Multiple submitters Inborn genetic diseases
  • p.Ile782= Multiple submitters Inborn genetic diseases
  • p.Ile922= Multiple submitters Inborn genetic diseases
  • p.Ile948= Multiple submitters Inborn genetic diseases
  • p.Leu1000= Multiple submitters Inborn genetic diseases
  • p.Leu1062= Multiple submitters Inborn genetic diseases
  • p.Leu1123= Multiple submitters Inborn genetic diseases
  • p.Leu1135= Multiple submitters Inborn genetic diseases
  • p.Leu1153= Multiple submitters Inborn genetic diseases
  • p.Leu1198= Multiple submitters Inborn genetic diseases
  • p.Leu1248= Multiple submitters Inborn genetic diseases
  • p.Leu1315= Multiple submitters Inborn genetic diseases
  • p.Leu1323= Multiple submitters Inborn genetic diseases
  • p.Leu1343= Multiple submitters Inborn genetic diseases
  • p.Leu1475= Multiple submitters Inborn genetic diseases
  • p.Leu1478= Multiple submitters Inborn genetic diseases
  • p.Leu1506= Multiple submitters Inborn genetic diseases
  • p.Leu1522= Multiple submitters Inborn genetic diseases
  • p.Leu1525= Multiple submitters Inborn genetic diseases
  • p.Leu1533= Multiple submitters Inborn genetic diseases
  • p.Leu1556= Multiple submitters Inborn genetic diseases
  • p.Leu294= Multiple submitters Inborn genetic diseases
  • p.Leu402= Multiple submitters Inborn genetic diseases
  • p.Leu504= Multiple submitters Inborn genetic diseases
  • p.Leu530= Multiple submitters Inborn genetic diseases
  • p.Leu571= Multiple submitters Inborn genetic diseases
  • p.Leu593= Multiple submitters Inborn genetic diseases
  • p.Leu624= Multiple submitters Inborn genetic diseases
  • p.Leu659= Multiple submitters Inborn genetic diseases
  • p.Leu750= Multiple submitters Inborn genetic diseases
  • p.Leu755= Multiple submitters Inborn genetic diseases
  • p.Leu822= Multiple submitters Inborn genetic diseases
  • p.Leu851= Multiple submitters Inborn genetic diseases
  • p.Leu873= Multiple submitters Inborn genetic diseases
  • p.Leu925= Multiple submitters Inborn genetic diseases
  • p.Lys1045= Multiple submitters Inborn genetic diseases
  • p.Lys1069= Multiple submitters Inborn genetic diseases
  • p.Lys1110= Multiple submitters Inborn genetic diseases
  • p.Lys1132= Multiple submitters Inborn genetic diseases
  • p.Lys1279= Multiple submitters Inborn genetic diseases
  • p.Lys1285= Multiple submitters Inborn genetic diseases
  • p.Lys1450= Multiple submitters Inborn genetic diseases
  • p.Lys1464= Multiple submitters Inborn genetic diseases
  • p.Lys1543= Multiple submitters Inborn genetic diseases
  • p.Lys200= Multiple submitters Inborn genetic diseases
  • p.Lys28= Multiple submitters Inborn genetic diseases
  • p.Lys371= Multiple submitters Inborn genetic diseases
  • p.Lys397= Multiple submitters Inborn genetic diseases
  • p.Lys53= Multiple submitters Inborn genetic diseases
  • p.Phe1083= Multiple submitters Inborn genetic diseases
  • p.Phe1497= Multiple submitters Inborn genetic diseases
  • p.Phe168= Multiple submitters Inborn genetic diseases
  • p.Phe224= Multiple submitters Inborn genetic diseases
  • p.Phe303= Multiple submitters Inborn genetic diseases
  • p.Phe321= Multiple submitters Inborn genetic diseases
  • p.Phe531= Multiple submitters Inborn genetic diseases
  • p.Phe762= Multiple submitters Inborn genetic diseases
  • p.Phe924= Multiple submitters Inborn genetic diseases
  • p.Pro104= Multiple submitters Inborn genetic diseases
  • p.Pro1215= Multiple submitters Inborn genetic diseases
  • p.Pro1375= Multiple submitters Inborn genetic diseases
  • p.Pro195= Multiple submitters Inborn genetic diseases
  • p.Pro299= Multiple submitters Inborn genetic diseases
  • p.Pro729= Multiple submitters Inborn genetic diseases
  • p.Pro797= Multiple submitters Inborn genetic diseases
  • p.Pro87= Multiple submitters Inborn genetic diseases
  • p.Pro95= Multiple submitters Inborn genetic diseases
  • p.Ser1003= Multiple submitters Inborn genetic diseases
  • p.Ser1075= Multiple submitters Inborn genetic diseases
  • p.Ser1120= Multiple submitters Inborn genetic diseases
  • p.Ser1255= Multiple submitters Inborn genetic diseases
  • p.Ser1297= Multiple submitters Inborn genetic diseases
  • p.Ser1317= Multiple submitters Inborn genetic diseases
  • p.Ser1383= Multiple submitters Inborn genetic diseases
  • p.Ser1458= Multiple submitters Inborn genetic diseases
  • p.Ser1535= Multiple submitters Inborn genetic diseases
  • p.Ser39= Multiple submitters Inborn genetic diseases
  • p.Ser393= Multiple submitters Inborn genetic diseases
  • p.Ser502= Multiple submitters Inborn genetic diseases
  • p.Ser506= Multiple submitters Inborn genetic diseases
  • p.Ser581= Multiple submitters Inborn genetic diseases
  • p.Ser626= Multiple submitters Inborn genetic diseases
  • p.Ser641= Multiple submitters Inborn genetic diseases
  • p.Ser674= Multiple submitters Inborn genetic diseases
  • p.Ser706= Multiple submitters Inborn genetic diseases
  • p.Ser820= Multiple submitters Inborn genetic diseases
  • p.Ser854= Multiple submitters Inborn genetic diseases
  • p.Ser863= Multiple submitters Inborn genetic diseases
  • p.Ser923= Multiple submitters Inborn genetic diseases
  • p.Ser93= Multiple submitters Inborn genetic diseases
  • p.Thr1150= Multiple submitters Inborn genetic diseases
  • p.Thr1170= Multiple submitters Inborn genetic diseases
  • p.Thr1177= Multiple submitters Inborn genetic diseases
  • p.Thr1207= Multiple submitters Inborn genetic diseases
  • p.Thr1355= Multiple submitters Inborn genetic diseases
  • p.Thr1405= Multiple submitters Inborn genetic diseases
  • p.Thr1474= Multiple submitters Inborn genetic diseases
  • p.Thr15= Multiple submitters Inborn genetic diseases
  • p.Thr203= Multiple submitters Inborn genetic diseases
  • p.Thr209= Multiple submitters Inborn genetic diseases
  • p.Thr605= Multiple submitters Inborn genetic diseases
  • p.Thr611= Multiple submitters Inborn genetic diseases
  • p.Thr620= Multiple submitters Inborn genetic diseases
  • p.Thr749= Multiple submitters Inborn genetic diseases
  • p.Thr933= Multiple submitters Inborn genetic diseases
  • p.Tyr1282= Multiple submitters Inborn genetic diseases
  • p.Tyr1346= Multiple submitters Inborn genetic diseases
  • p.Tyr1451= Multiple submitters Inborn genetic diseases
  • p.Tyr1538= Multiple submitters Inborn genetic diseases
  • p.Tyr181= Multiple submitters Inborn genetic diseases
  • p.Tyr33= Multiple submitters Inborn genetic diseases
  • p.Tyr384= Multiple submitters Inborn genetic diseases
  • p.Tyr473= Multiple submitters Inborn genetic diseases
  • p.Tyr490= Multiple submitters Inborn genetic diseases
  • p.Tyr795= Multiple submitters Inborn genetic diseases
  • p.Tyr859= Multiple submitters Inborn genetic diseases
  • p.Tyr931= Multiple submitters Inborn genetic diseases
  • p.Tyr950= Multiple submitters Inborn genetic diseases
  • p.Tyr982= Multiple submitters Inborn genetic diseases
  • p.Val145= Multiple submitters Inborn genetic diseases
  • p.Val211Ala Multiple submitters Inborn genetic diseases
  • p.Val221= Multiple submitters Inborn genetic diseases
  • p.Val23= Multiple submitters Inborn genetic diseases
  • p.Val241= Multiple submitters Inborn genetic diseases
  • p.Val42= Multiple submitters Inborn genetic diseases
  • p.Val5= Multiple submitters Inborn genetic diseases
  • p.Val582= Multiple submitters Inborn genetic diseases
  • p.Val617= Multiple submitters Inborn genetic diseases
  • p.Val798= Multiple submitters Inborn genetic diseases
  • p.Val811= Multiple submitters Inborn genetic diseases
  • p.Val821= Multiple submitters Inborn genetic diseases
  • p.Ala1012= Single submitter Inborn genetic diseases
  • p.Ala1073= Single submitter Inborn genetic diseases
  • p.Ala1082= Single submitter Inborn genetic diseases
  • p.Ala1102= Single submitter Inborn genetic diseases
  • p.Ala1106= Single submitter Inborn genetic diseases
  • p.Ala1109= Single submitter
  • p.Ala1162= Single submitter Inborn genetic diseases
  • p.Ala1195= Single submitter
  • p.Ala1337= Single submitter Inborn genetic diseases
  • p.Ala1341Ser Single submitter Inborn genetic diseases
  • p.Ala1386= Single submitter
  • p.Ala148Thr Single submitter Inborn genetic diseases
  • p.Ala1578= Single submitter
  • p.Ala189Pro Single submitter Inborn genetic diseases
  • p.Ala225= Single submitter Inborn genetic diseases
  • p.Ala227= Single submitter Inborn genetic diseases
  • p.Ala347= Single submitter
  • p.Ala365= Single submitter
  • p.Ala375= Single submitter Inborn genetic diseases
  • p.Ala566= Single submitter Inborn genetic diseases
  • p.Ala778= Single submitter Inborn genetic diseases
  • p.Ala849= Single submitter Inborn genetic diseases
  • p.Ala919= Single submitter Inborn genetic diseases
  • p.Ala977= Single submitter Inborn genetic diseases
  • p.Arg1002= Single submitter Inborn genetic diseases
  • p.Arg1076= Single submitter Inborn genetic diseases
  • p.Arg1077= Single submitter Inborn genetic diseases
  • p.Arg1168= Single submitter Inborn genetic diseases
  • p.Arg1298= Single submitter Inborn genetic diseases
  • p.Arg1411= Single submitter Inborn genetic diseases
  • p.Arg1457= Single submitter Inborn genetic diseases
  • p.Arg1465= Single submitter
  • p.Arg1481Lys Single submitter Inborn genetic diseases
  • p.Arg1557= Single submitter Inborn genetic diseases
  • p.Arg1560= Single submitter Inborn genetic diseases
  • p.Arg302= Single submitter Inborn genetic diseases
  • p.Arg359= Single submitter
  • p.Arg589= Single submitter Inborn genetic diseases
  • p.Arg629= Single submitter Inborn genetic diseases
  • p.Arg70= Single submitter Inborn genetic diseases
  • p.Arg788= Single submitter Inborn genetic diseases
  • p.Arg828= Single submitter Inborn genetic diseases
  • p.Arg981= Single submitter Inborn genetic diseases
  • p.Arg986= Single submitter Inborn genetic diseases
  • p.Asn1100= Single submitter
  • p.Asn1138= Single submitter Inborn genetic diseases
  • p.Asn113Lys Single submitter Inborn genetic diseases
  • p.Asn1179= Single submitter Inborn genetic diseases
  • p.Asn118= Single submitter Inborn genetic diseases
  • p.Asn1259= Single submitter Inborn genetic diseases
  • p.Asn1348= Single submitter Inborn genetic diseases
  • p.Asn1371= Single submitter Inborn genetic diseases
  • p.Asn1378= Single submitter Inborn genetic diseases
  • p.Asn1456= Single submitter Inborn genetic diseases
  • p.Asn147= Single submitter Inborn genetic diseases
  • p.Asn1561= Single submitter Inborn genetic diseases
  • p.Asn219= Single submitter Inborn genetic diseases
  • p.Asn265= Single submitter Inborn genetic diseases
  • p.Asn278= Single submitter Inborn genetic diseases
  • p.Asn296= Single submitter Inborn genetic diseases
  • p.Asn297= Single submitter Inborn genetic diseases
  • p.Asn30= Single submitter Inborn genetic diseases
  • p.Asn317Lys Single submitter Inborn genetic diseases
  • p.Asn466= Single submitter Inborn genetic diseases
  • p.Asn479= Single submitter Inborn genetic diseases
  • p.Asn536= Single submitter Inborn genetic diseases
  • p.Asn576= Single submitter
  • p.Asn583= Single submitter
  • p.Asn761= Single submitter Inborn genetic diseases
  • p.Asn761Lys Single submitter Inborn genetic diseases
  • p.Asn838= Single submitter Inborn genetic diseases
  • p.Asn844= Single submitter Inborn genetic diseases
  • p.Asn858Lys Single submitter Inborn genetic diseases
  • p.Asn885= Single submitter Inborn genetic diseases
  • p.Asp1121= Single submitter Inborn genetic diseases
  • p.Asp1148= Single submitter
  • p.Asp120= Single submitter
  • p.Asp1273= Single submitter Inborn genetic diseases
  • p.Asp1338= Single submitter Inborn genetic diseases
  • p.Asp1353Asn Single submitter Inborn genetic diseases
  • p.Asp143Asn Single submitter Inborn genetic diseases
  • p.Asp1442= Single submitter Inborn genetic diseases
  • p.Asp1444= Single submitter Inborn genetic diseases
  • p.Asp360= Single submitter
  • p.Asp407= Single submitter Inborn genetic diseases
  • p.Asp475= Single submitter Inborn genetic diseases
  • p.Asp503= Single submitter Inborn genetic diseases
  • p.Asp602= Single submitter
  • p.Asp720= Single submitter Inborn genetic diseases
  • p.Asp773Gly Single submitter Inborn genetic diseases
  • p.Asp794Glu Single submitter Inborn genetic diseases
  • p.Asp846= Single submitter Inborn genetic diseases
  • p.Asp853= Single submitter
  • p.Cys1141= Single submitter Inborn genetic diseases
  • p.Cys1196= Single submitter Inborn genetic diseases
  • p.Cys1299= Single submitter Inborn genetic diseases
  • p.Cys1299Tyr Single submitter Inborn genetic diseases
  • p.Cys1467= Single submitter Inborn genetic diseases

Uncertain significance 1724

Showing the top 300 by review status; the full set is in the sitemap.