SBDS — 416 ClinVar variants

All ClinVar germline SBDS variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 225 flagged for review →

18 Pathogenic · 6 Pathogenic/Likely pathogenic · 28 Likely pathogenic · 11 Conflicting · 15 Benign · 6 Benign/Likely benign · 98 Likely benign · 234 Uncertain significance

Full SBDS gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 225

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 4

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 172

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 172

Predictors split 49

The independent predictors disagree with each other — read with care.

All SBDS variants

Pathogenic 18

  • c.258+1G>C Multiple submitters SBDS-related disorder
  • p.Gln103fs Multiple submitters Shwachman-Diamond syndrome 1
  • p.Glu99fs Multiple submitters SBDS-related disorder
  • p.Lys62Ter Multiple submitters Shwachman-Diamond syndrome
  • p.Ser41fs Multiple submitters SBDS-related disorder
  • p.Thr7fs Multiple submitters Shwachman-Diamond syndrome 1
  • p.Val36fs Multiple submitters Shwachman-Diamond syndrome 1
  • c.129-2A>G Single submitter Shwachman-Diamond syndrome 1
  • c.460-1G>A Single submitter Inborn genetic diseases
  • c.624+1G>C Single submitter Shwachman-Diamond syndrome 1
  • c.625-1delG Single submitter Shwachman-Diamond syndrome 1
  • p.Gln205Ter Single submitter Inborn genetic diseases
  • p.His54fs Single submitter aplastic anemia
  • p.Lys62Glu Single submitter SBDS-related disorder
  • p.Met20fs Single submitter Inborn genetic diseases
  • c.258+347_459+223del No assertion criteria Shwachman-Diamond syndrome 1
  • p.Asn34fs No assertion criteria Shwachman-Diamond syndrome 1
  • p.Cys119Tyr No assertion criteria Shwachman-Diamond syndrome 1

Pathogenic/Likely pathogenic 6

  • c.258+2T>C Multiple submitters Fetal anomalies with a likely genetic cause
  • p.Arg218Gln Multiple submitters aplastic anemia ⚠
  • p.Arg218Ter Multiple submitters aplastic anemia
  • p.Lys125fs Multiple submitters SBDS-related disorder
  • p.Lys33Thr Multiple submitters Inborn genetic diseases
  • p.Thr5fs Multiple submitters aplastic anemia

Likely pathogenic 28

Conflicting classifications of pathogenicity 11

Benign 15

Benign/Likely benign 6

  • c.258+19A>G Multiple submitters aplastic anemia
  • p.Cys119= Multiple submitters Inborn genetic diseases
  • p.Ile212Thr Multiple submitters Inborn genetic diseases
  • p.Lys67= Multiple submitters Inborn genetic diseases
  • p.Phe217= Multiple submitters Inborn genetic diseases
  • p.Ser61= Multiple submitters Inborn genetic diseases

Likely benign 98

  • p.Ala23= Multiple submitters Inborn genetic diseases
  • p.Ala30= Multiple submitters Inborn genetic diseases
  • p.Leu132= Multiple submitters Inborn genetic diseases
  • p.Leu239= Multiple submitters Inborn genetic diseases
  • p.Ser143= Multiple submitters Inborn genetic diseases
  • p.Thr113= Multiple submitters Inborn genetic diseases
  • p.Thr129= Multiple submitters Inborn genetic diseases
  • p.Val236= Multiple submitters Inborn genetic diseases
  • p.Val242= Multiple submitters Inborn genetic diseases
  • c.128+14T>C Single submitter
  • c.258+48T>C Single submitter
  • c.259-8T>G Single submitter
  • c.259-9T>C Single submitter
  • c.459+14C>T Single submitter
  • c.460-16G>A Single submitter
  • c.625-16A>G Single submitter
  • p.Ala116= Single submitter Inborn genetic diseases
  • p.Ala16= Single submitter Inborn genetic diseases
  • p.Ala74= Single submitter Inborn genetic diseases
  • p.Arg109= Single submitter Inborn genetic diseases
  • p.Arg135= Single submitter Inborn genetic diseases
  • p.Arg175= Single submitter Inborn genetic diseases
  • p.Arg19= Single submitter Inborn genetic diseases
  • p.Arg22= Single submitter Inborn genetic diseases
  • p.Arg26= Single submitter Inborn genetic diseases
  • p.Arg40= Single submitter Inborn genetic diseases
  • p.Asn14= Single submitter Inborn genetic diseases
  • p.Asn181= Single submitter Inborn genetic diseases
  • p.Asp110= Single submitter Inborn genetic diseases
  • p.Asp117= Single submitter Inborn genetic diseases
  • p.Asp213= Single submitter Inborn genetic diseases
  • p.Asp241= Single submitter Inborn genetic diseases
  • p.Asp46= Single submitter Inborn genetic diseases
  • p.Asp79= Single submitter Inborn genetic diseases
  • p.Asp97= Single submitter Inborn genetic diseases
  • p.Cys84= Single submitter Inborn genetic diseases
  • p.Gln103= Single submitter Inborn genetic diseases
  • p.Gln80= Single submitter Inborn genetic diseases
  • p.Gln9= Single submitter Inborn genetic diseases
  • p.Glu105= Single submitter Inborn genetic diseases
  • p.Glu123= Single submitter Inborn genetic diseases
  • p.Glu134= Single submitter Inborn genetic diseases
  • p.Glu219= Single submitter Inborn genetic diseases
  • p.Glu222= Single submitter Inborn genetic diseases
  • p.Glu227= Single submitter Inborn genetic diseases
  • p.Glu243= Single submitter Inborn genetic diseases
  • p.Glu244= Single submitter Inborn genetic diseases
  • p.Glu44= Single submitter Inborn genetic diseases
  • p.Glu69= Single submitter Inborn genetic diseases
  • p.Glu92= Single submitter Inborn genetic diseases
  • p.Gly24= Single submitter Inborn genetic diseases
  • p.Gly245= Single submitter Inborn genetic diseases
  • p.Gly38= Single submitter Inborn genetic diseases
  • p.Gly63= Single submitter Inborn genetic diseases
  • p.His141= Single submitter Inborn genetic diseases
  • p.Ile10= Single submitter Inborn genetic diseases
  • p.Ile111= Single submitter Inborn genetic diseases
  • p.Ile114= Single submitter Inborn genetic diseases
  • p.Ile131= Single submitter Inborn genetic diseases
  • p.Ile133= Single submitter Inborn genetic diseases
  • p.Ile140= Single submitter Inborn genetic diseases
  • p.Ile158= Single submitter Inborn genetic diseases
  • p.Ile29= Single submitter Inborn genetic diseases
  • p.Ile87= Single submitter Inborn genetic diseases
  • p.Leu12= Single submitter Inborn genetic diseases
  • p.Leu161= Single submitter Inborn genetic diseases
  • p.Leu190= Single submitter Inborn genetic diseases
  • p.Leu193= Single submitter Inborn genetic diseases
  • p.Leu206= Single submitter Inborn genetic diseases
  • p.Leu211= Single submitter Inborn genetic diseases
  • p.Leu223= Single submitter Inborn genetic diseases
  • p.Leu237= Single submitter Inborn genetic diseases
  • p.Leu51= Single submitter Inborn genetic diseases
  • p.Leu88= Single submitter Inborn genetic diseases
  • p.Lys148= Single submitter Inborn genetic diseases
  • p.Lys68= Single submitter Inborn genetic diseases
  • p.Lys90= Single submitter Inborn genetic diseases
  • p.Lys98= Single submitter Inborn genetic diseases
  • p.Phe27= Single submitter Inborn genetic diseases
  • p.Pro122= Single submitter Inborn genetic diseases
  • p.Pro127= Single submitter Inborn genetic diseases
  • p.Pro214= Single submitter Inborn genetic diseases
  • p.Pro6= Single submitter Inborn genetic diseases
  • p.Ser149= Single submitter Inborn genetic diseases
  • p.Ser199= Single submitter Inborn genetic diseases
  • p.Ser2= Single submitter Inborn genetic diseases
  • p.Ser55= Single submitter Inborn genetic diseases
  • p.Thr5= Single submitter Inborn genetic diseases
  • p.Thr77= Single submitter Inborn genetic diseases
  • p.Thr89= Single submitter Inborn genetic diseases
  • p.Val115= Single submitter
  • p.Val157= Single submitter Inborn genetic diseases
  • p.Val17= Single submitter Inborn genetic diseases
  • p.Val18= Single submitter Inborn genetic diseases
  • p.Val180= Single submitter Inborn genetic diseases
  • p.Val209= Single submitter Inborn genetic diseases
  • p.Val36= Single submitter
  • p.Val50= Single submitter Inborn genetic diseases

Uncertain significance 234