SCARB2 — 525 ClinVar variants

All ClinVar germline SCARB2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 197 flagged for review →

20 Pathogenic · 4 Pathogenic/Likely pathogenic · 15 Likely pathogenic · 20 Conflicting · 52 Benign · 10 Benign/Likely benign · 183 Likely benign · 221 Uncertain significance

Full SCARB2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 197

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 8

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 152

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 152

Predictors split 37

The independent predictors disagree with each other — read with care.

All SCARB2 variants

Pathogenic 20

  • c.704+1G>A Multiple submitters action myoclonus-renal failure syndrome
  • p.Arg424Ter Multiple submitters action myoclonus-renal failure syndrome
  • p.Gln288Ter Multiple submitters progressive myoclonus epilepsy
  • p.Leu319fs Multiple submitters progressive myoclonus epilepsy
  • p.Trp146fs Multiple submitters SCARB2-related disorder
  • c.994+1G>T Single submitter action myoclonus-renal failure syndrome
  • p.Asn45fs Single submitter action myoclonus-renal failure syndrome
  • p.Gln344Ter Single submitter progressive myoclonus epilepsy
  • p.Gly446fs Single submitter
  • p.His341fs Single submitter action myoclonus-renal failure syndrome
  • p.Leu76fs Single submitter progressive myoclonus epilepsy
  • p.Thr421fs Single submitter progressive myoclonus epilepsy
  • p.Tyr213fs Single submitter progressive myoclonus epilepsy
  • p.Tyr222_Asn224delinsTer Single submitter progressive myoclonus epilepsy
  • p.Tyr284fs Single submitter progressive myoclonus epilepsy
  • c.1114-2A>C No assertion criteria action myoclonus-renal failure syndrome
  • c.1239+1G>T No assertion criteria action myoclonus-renal failure syndrome
  • p.Gln123fs No assertion criteria action myoclonus-renal failure syndrome
  • p.Glu420fs No assertion criteria action myoclonus-renal failure syndrome
  • p.Trp178Ter No assertion criteria action myoclonus-renal failure syndrome

Pathogenic/Likely pathogenic 4

  • p.Arg121Ter Multiple submitters progressive myoclonus epilepsy
  • p.Gln30Ter Multiple submitters progressive myoclonus epilepsy
  • p.Glu79fs Multiple submitters progressive myoclonus epilepsy
  • p.Ile335fs Multiple submitters action myoclonus-renal failure syndrome

Likely pathogenic 15

  • c.1113+1G>T Single submitter progressive myoclonus epilepsy
  • c.1114-2A>G Single submitter action myoclonus-renal failure syndrome
  • c.117+2T>C Single submitter action myoclonus-renal failure syndrome
  • c.1187+1G>A Single submitter progressive myoclonus epilepsy
  • c.1240-2A>C Single submitter action myoclonus-renal failure syndrome
  • c.1240-2A>G Single submitter progressive myoclonus epilepsy
  • c.424-1G>A Single submitter progressive myoclonus epilepsy
  • c.994+2T>C Single submitter action myoclonus-renal failure syndrome
  • c.995-16_1062delinsG Single submitter progressive myoclonus epilepsy
  • p.Arg348fs Single submitter action myoclonus-renal failure syndrome
  • p.Gly460Ter Single submitter SCARB2-related disorder
  • p.Ile144fs Single submitter
  • p.Leu392fs Single submitter
  • p.Leu451fs Single submitter action myoclonus-renal failure syndrome
  • p.Ile37fs No assertion criteria action myoclonus-renal failure syndrome

Conflicting classifications of pathogenicity 20

Benign 52

Benign/Likely benign 10

  • c.1239+14C>T Multiple submitters progressive myoclonus epilepsy
  • c.275+20T>C Multiple submitters action myoclonus-renal failure syndrome
  • c.704+16T>C Multiple submitters progressive myoclonus epilepsy
  • p.Arg82= Multiple submitters progressive myoclonus epilepsy
  • p.Gly462Glu Multiple submitters progressive myoclonus epilepsy
  • p.His189= Multiple submitters action myoclonus-renal failure syndrome
  • p.Met159Val Multiple submitters progressive myoclonus epilepsy
  • p.Pro57= Multiple submitters action myoclonus-renal failure syndrome
  • p.Thr11= Multiple submitters action myoclonus-renal failure syndrome
  • p.Val396Ile Multiple submitters focal segmental glomerulosclerosis

Likely benign 183

  • c.117+14G>A Multiple submitters progressive myoclonus epilepsy
  • c.117+19T>C Multiple submitters progressive myoclonus epilepsy
  • c.117+74T>A Multiple submitters
  • c.1187+12T>C Multiple submitters progressive myoclonus epilepsy
  • c.1187+18C>T Multiple submitters progressive myoclonus epilepsy
  • c.1187+20A>G Multiple submitters progressive myoclonus epilepsy
  • c.1188-11del Multiple submitters progressive myoclonus epilepsy
  • c.1240-18A>G Multiple submitters progressive myoclonus epilepsy
  • c.1398+10_1398+22del Multiple submitters progressive myoclonus epilepsy
  • c.1399-206A>G Multiple submitters
  • c.275+14A>G Multiple submitters progressive myoclonus epilepsy
  • c.276-17C>T Multiple submitters progressive myoclonus epilepsy
  • c.276-7C>G Multiple submitters progressive myoclonus epilepsy
  • c.423+7A>C Multiple submitters progressive myoclonus epilepsy
  • c.704+17A>G Multiple submitters progressive myoclonus epilepsy
  • c.705-183G>T Multiple submitters
  • c.705-20C>G Multiple submitters progressive myoclonus epilepsy
  • c.824+18A>G Multiple submitters progressive myoclonus epilepsy
  • c.824+20G>A Multiple submitters progressive myoclonus epilepsy
  • c.995-79G>A Multiple submitters
  • c.-321A>C Multiple submitters
  • p.Ala299= Multiple submitters progressive myoclonus epilepsy
  • p.Ala309= Multiple submitters progressive myoclonus epilepsy
  • p.Ala422= Multiple submitters progressive myoclonus epilepsy
  • p.Ala469= Multiple submitters progressive myoclonus epilepsy
  • p.Arg134= Multiple submitters progressive myoclonus epilepsy
  • p.Arg3= Multiple submitters progressive myoclonus epilepsy
  • p.Asp174= Multiple submitters action myoclonus-renal failure syndrome
  • p.Asp194= Multiple submitters progressive myoclonus epilepsy
  • p.His363= Multiple submitters progressive myoclonus epilepsy
  • p.Ile156= Multiple submitters progressive myoclonus epilepsy
  • p.Leu302= Multiple submitters progressive myoclonus epilepsy
  • p.Leu76= Multiple submitters progressive myoclonus epilepsy
  • p.Lys31= Multiple submitters Inborn genetic diseases
  • p.Lys97= Multiple submitters progressive myoclonus epilepsy
  • p.Pro193= Multiple submitters progressive myoclonus epilepsy
  • p.Thr398= Multiple submitters progressive myoclonus epilepsy
  • p.Val415= Multiple submitters Inborn genetic diseases
  • c.1113+12C>T Single submitter progressive myoclonus epilepsy
  • c.1113+16C>T Single submitter progressive myoclonus epilepsy
  • c.1113+19C>G Single submitter progressive myoclonus epilepsy
  • c.1114-13C>T Single submitter progressive myoclonus epilepsy
  • c.1114-15T>C Single submitter progressive myoclonus epilepsy
  • c.1114-18C>T Single submitter progressive myoclonus epilepsy
  • c.1114-19T>G Single submitter progressive myoclonus epilepsy
  • c.117+10G>A Single submitter progressive myoclonus epilepsy
  • c.117+13G>A Single submitter progressive myoclonus epilepsy
  • c.117+9G>A Single submitter progressive myoclonus epilepsy
  • c.118-10T>G Single submitter progressive myoclonus epilepsy
  • c.118-12G>T Single submitter progressive myoclonus epilepsy
  • c.118-14T>C Single submitter progressive myoclonus epilepsy
  • c.118-19_118-17del Single submitter progressive myoclonus epilepsy
  • c.118-7T>C Single submitter progressive myoclonus epilepsy
  • c.1187+10G>C Single submitter progressive myoclonus epilepsy
  • c.1187+13T>C Single submitter progressive myoclonus epilepsy
  • c.1187+95T>G Single submitter
  • c.1188-15C>T Single submitter progressive myoclonus epilepsy
  • c.1188-19T>G Single submitter progressive myoclonus epilepsy
  • c.1188-259C>G Single submitter
  • c.1188-5T>C Single submitter progressive myoclonus epilepsy
  • c.1239+12G>A Single submitter progressive myoclonus epilepsy
  • c.1239+14_1239+17dup Single submitter progressive myoclonus epilepsy
  • c.1239+15G>A Single submitter progressive myoclonus epilepsy
  • c.1239+8C>G Single submitter progressive myoclonus epilepsy
  • c.1240-15T>G Single submitter progressive myoclonus epilepsy
  • c.1240-20C>T Single submitter
  • c.1240-4C>T Single submitter progressive myoclonus epilepsy
  • c.1240-6C>G Single submitter progressive myoclonus epilepsy
  • c.1240-9C>T Single submitter progressive myoclonus epilepsy
  • c.1398+14dup Single submitter progressive myoclonus epilepsy
  • c.1398+8C>A Single submitter progressive myoclonus epilepsy
  • c.1398+8C>T Single submitter progressive myoclonus epilepsy
  • c.1399-10T>G Single submitter
  • c.1399-11C>G Single submitter progressive myoclonus epilepsy
  • c.1399-13T>C Single submitter progressive myoclonus epilepsy
  • c.1399-15T>A Single submitter progressive myoclonus epilepsy
  • c.1399-16C>G Single submitter progressive myoclonus epilepsy
  • c.1399-16C>T Single submitter progressive myoclonus epilepsy
  • c.1399-8T>C Single submitter progressive myoclonus epilepsy
  • c.275+12C>A Single submitter progressive myoclonus epilepsy
  • c.275+16C>A Single submitter progressive myoclonus epilepsy
  • c.276-10T>G Single submitter progressive myoclonus epilepsy
  • c.276-18C>T Single submitter progressive myoclonus epilepsy
  • c.276-272C>T Single submitter
  • c.276-6T>C Single submitter progressive myoclonus epilepsy
  • c.424-18T>G Single submitter progressive myoclonus epilepsy
  • c.612+15C>G Single submitter progressive myoclonus epilepsy
  • c.612+8G>A Single submitter progressive myoclonus epilepsy
  • c.612+9A>G Single submitter progressive myoclonus epilepsy
  • c.613-11C>T Single submitter progressive myoclonus epilepsy
  • c.613-14T>G Single submitter progressive myoclonus epilepsy
  • c.613-16A>C Single submitter progressive myoclonus epilepsy
  • c.613-7T>C Single submitter progressive myoclonus epilepsy
  • c.705-12T>C Single submitter progressive myoclonus epilepsy
  • c.705-16T>G Single submitter progressive myoclonus epilepsy
  • c.705-19T>C Single submitter progressive myoclonus epilepsy
  • c.825-13T>C Single submitter progressive myoclonus epilepsy
  • c.825-17T>C Single submitter progressive myoclonus epilepsy
  • c.825-20T>C Single submitter progressive myoclonus epilepsy
  • c.825-8C>T Single submitter progressive myoclonus epilepsy
  • c.994+11A>G Single submitter progressive myoclonus epilepsy
  • c.994+19G>T Single submitter progressive myoclonus epilepsy
  • c.994+280A>G Single submitter
  • c.-11C>T Single submitter
  • c.-148G>C Single submitter
  • c.-16G>A Single submitter
  • c.-18C>T Single submitter
  • c.-44C>A Single submitter
  • c.-48G>A Single submitter
  • c.-58C>A Single submitter
  • p.Ala116= Single submitter progressive myoclonus epilepsy
  • p.Ala26= Single submitter progressive myoclonus epilepsy
  • p.Ala32= Single submitter progressive myoclonus epilepsy
  • p.Ala352= Single submitter progressive myoclonus epilepsy
  • p.Ala379= Single submitter Inborn genetic diseases
  • p.Ala444= Single submitter progressive myoclonus epilepsy
  • p.Ala457= Single submitter progressive myoclonus epilepsy
  • p.Ala49= Single submitter progressive myoclonus epilepsy
  • p.Arg153= Single submitter progressive myoclonus epilepsy
  • p.Arg27= Single submitter progressive myoclonus epilepsy
  • p.Arg77= Single submitter progressive myoclonus epilepsy
  • p.Asn105= Single submitter progressive myoclonus epilepsy
  • p.Asn137= Single submitter progressive myoclonus epilepsy
  • p.Asn68= Single submitter progressive myoclonus epilepsy
  • p.Asp307= Single submitter progressive myoclonus epilepsy
  • p.Asp362= Single submitter progressive myoclonus epilepsy
  • p.Asp393= Single submitter progressive myoclonus epilepsy
  • p.Asp394= Single submitter progressive myoclonus epilepsy
  • p.Cys4= Single submitter progressive myoclonus epilepsy
  • p.Gln101= Single submitter progressive myoclonus epilepsy
  • p.Gln148= Single submitter progressive myoclonus epilepsy
  • p.Gln165= Single submitter progressive myoclonus epilepsy
  • p.Glu183= Single submitter progressive myoclonus epilepsy
  • p.Glu230= Single submitter progressive myoclonus epilepsy
  • p.Glu38= Single submitter progressive myoclonus epilepsy
  • p.Gly207= Single submitter progressive myoclonus epilepsy
  • p.Gly320= Single submitter progressive myoclonus epilepsy
  • p.Gly462= Single submitter progressive myoclonus epilepsy
  • p.Gly78= Single submitter progressive myoclonus epilepsy
  • p.Ile195= Single submitter progressive myoclonus epilepsy
  • p.Ile228= Single submitter progressive myoclonus epilepsy
  • p.Ile335= Single submitter progressive myoclonus epilepsy
  • p.Ile369= Single submitter progressive myoclonus epilepsy
  • p.Ile387= Single submitter progressive myoclonus epilepsy
  • p.Ile435= Single submitter progressive myoclonus epilepsy
  • p.Leu176= Single submitter progressive myoclonus epilepsy
  • p.Leu185= Single submitter
  • p.Leu24= Single submitter progressive myoclonus epilepsy
  • p.Leu411= Single submitter progressive myoclonus epilepsy
  • p.Leu425= Single submitter progressive myoclonus epilepsy
  • p.Leu43= Single submitter progressive myoclonus epilepsy
  • p.Leu475= Single submitter progressive myoclonus epilepsy
  • p.Leu58= Single submitter progressive myoclonus epilepsy
  • p.Lys115= Single submitter progressive myoclonus epilepsy
  • p.Phe202= Single submitter progressive myoclonus epilepsy
  • p.Phe293= Single submitter progressive myoclonus epilepsy
  • p.Phe342= Single submitter progressive myoclonus epilepsy
  • p.Phe6= Single submitter progressive myoclonus epilepsy
  • p.Phe67= Single submitter progressive myoclonus epilepsy
  • p.Pro270= Single submitter Inborn genetic diseases
  • p.Pro439= Single submitter progressive myoclonus epilepsy
  • p.Pro56= Single submitter Inborn genetic diseases
  • p.Pro88= Single submitter progressive myoclonus epilepsy
  • p.Ser124= Single submitter progressive myoclonus epilepsy
  • p.Ser13= Single submitter progressive myoclonus epilepsy
  • p.Ser196= Single submitter progressive myoclonus epilepsy
  • p.Ser286= Single submitter progressive myoclonus epilepsy
  • p.Ser338= Single submitter progressive myoclonus epilepsy
  • p.Ser414= Single submitter progressive myoclonus epilepsy
  • p.Thr135= Single submitter progressive myoclonus epilepsy
  • p.Thr19= Single submitter progressive myoclonus epilepsy
  • p.Thr226= Single submitter progressive myoclonus epilepsy
  • p.Thr305= Single submitter progressive myoclonus epilepsy
  • p.Thr373= Single submitter progressive myoclonus epilepsy
  • p.Thr421= Single submitter progressive myoclonus epilepsy
  • p.Thr47= Single submitter progressive myoclonus epilepsy
  • p.Tyr198= Single submitter progressive myoclonus epilepsy
  • p.Tyr388= Single submitter progressive myoclonus epilepsy
  • p.Tyr410= Single submitter progressive myoclonus epilepsy
  • p.Tyr7= Single submitter progressive myoclonus epilepsy
  • p.Val28= Single submitter progressive myoclonus epilepsy
  • p.Val408= Single submitter progressive myoclonus epilepsy
  • p.Val83= Single submitter progressive myoclonus epilepsy

Uncertain significance 221