SFTPA2 — 112 ClinVar variants
All ClinVar germline SFTPA2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 49 flagged for review →
3 Pathogenic · 3 Likely pathogenic · 5 Conflicting · 19 Benign · 8 Benign/Likely benign · 26 Likely benign · 48 Uncertain significance
Full SFTPA2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 49
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 3
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
SFTPA2 p.Ala154Pro
Conflicting
Single submitter
interstitial lung disease 2
-
SFTPA2 p.Arg85Cys
Conflicting
Single submitter
interstitial lung disease 2
-
SFTPA2 p.Thr66Ile
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 38
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
SFTPA2 p.Glu21Lys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
SFTPA2 p.Phe177Tyr
Uncertain significance
Multiple submitters
interstitial lung disease 2
-
SFTPA2 p.Ala150Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Ala15Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Ala15Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Ala163Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Ala217Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Ala78Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Arg122Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Arg199His
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Arg219Leu
Uncertain significance
Single submitter
interstitial lung disease 2
- SFTPA2 p.Arg242Gln Uncertain significance Single submitter
- SFTPA2 p.Asn142Ser Uncertain significance Single submitter
- SFTPA2 p.Asn207Tyr Uncertain significance Single submitter
-
SFTPA2 p.Asp45Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Glu106Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Glu172Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Glu226Lys
Uncertain significance
Single submitter
interstitial lung disease 2
-
SFTPA2 p.Glu65Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Gly46Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Gly80Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Ile131Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Ile245Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Ile32Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Ile32Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Leu99Phe
Uncertain significance
Single submitter
Inborn genetic diseases
- SFTPA2 p.Met227Arg Uncertain significance Single submitter
-
SFTPA2 p.Pro54Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Pro59Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Pro62Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Pro70His
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Pro96Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- SFTPA2 p.Ser38Cys Uncertain significance Single submitter
-
SFTPA2 p.Thr229Lys
Uncertain significance
Single submitter
Mullegama-Klein-Martinez syndrome
-
SFTPA2 p.Tyr181Cys
Uncertain significance
Single submitter
Mullegama-Klein-Martinez syndrome
-
SFTPA2 p.Tyr200Phe
Uncertain significance
Single submitter
Inborn genetic diseases
- SFTPA2 p.Gly86Glu Uncertain significance No assertion criteria
-
SFTPA2 p.Pro56Leu
Uncertain significance
No assertion criteria
SFTPA2-related disorder
Predictors split 8
The independent predictors disagree with each other — read with care.
-
SFTPA2 p.Arg199Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- SFTPA2 p.Gly34Ser Uncertain significance Single submitter
-
SFTPA2 p.Gly40Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Lys51Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Pro76Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Tyr184Cys
Uncertain significance
Single submitter
interstitial lung disease 2
-
SFTPA2 p.Val134Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
SFTPA2 p.Val178Met
Conflicting
Single submitter
interstitial lung disease 2
All SFTPA2 variants
Pathogenic 3
- p.Asn171Ile No assertion criteria interstitial lung disease 2
- p.Phe198Ser No assertion criteria interstitial lung disease 2
- p.Trp233Arg No assertion criteria interstitial lung disease 2
Likely pathogenic 3
- p.Gly231Val Single submitter interstitial lung disease 2
- p.Tyr186Cys Single submitter interstitial lung disease 2
- p.Tyr240del Single submitter
Conflicting classifications of pathogenicity 5
- p.Ala154Pro Single submitter interstitial lung disease 2 ⚠
- p.Arg85Cys Single submitter interstitial lung disease 2 ⚠
- p.Pro57= Single submitter interstitial lung disease 2
- p.Thr66Ile Single submitter Inborn genetic diseases ⚠
- p.Val178Met Single submitter interstitial lung disease 2 ⚠
Benign 19
- c.173-59C>T Multiple submitters
- c.292+11C>T Multiple submitters
- c.292+21G>A Multiple submitters interstitial lung disease 2
- c.292+64A>G Multiple submitters
- c.292+97T>A Multiple submitters
- c.370+67C>G Multiple submitters
- c.371-19T>C Multiple submitters
- c.-23-196G>A Multiple submitters
- c.-23-221T>C Multiple submitters
- c.-23-5G>A Multiple submitters interstitial lung disease 2
- c.*152C>T Multiple submitters
- p.Ala91Pro Multiple submitters
- p.Arg94= Multiple submitters
- p.Gln223Lys Multiple submitters interstitial lung disease 2
- p.Pro216= Multiple submitters
- c.172+138G>C Single submitter
- c.292+47dup Single submitter
- p.Arg219= Single submitter
- p.Pro62= Single submitter
Benign/Likely benign 8
- c.-23-161G>A Multiple submitters
- p.Arg85His Multiple submitters
- p.Glu105Ala Multiple submitters
- p.Phe114= Multiple submitters
- p.Ser140= Multiple submitters interstitial lung disease 2
- p.Thr66= Multiple submitters
- p.Thr9Asn Multiple submitters
- p.Val50Leu Multiple submitters
Likely benign 26
- p.Asp202= Multiple submitters
- c.173-18T>C Single submitter
- c.292+18G>T Single submitter
- p.Ala124Val Single submitter Inborn genetic diseases
- p.Ala15= Single submitter
- p.Ala19Val Single submitter
- p.Asn73Asp Single submitter
- p.Asp113Asn Single submitter Inborn genetic diseases
- p.Gly55= Single submitter
- p.Gly71= Single submitter
- p.Lys179Arg Single submitter Inborn genetic diseases
- p.Ser141Thr Single submitter Inborn genetic diseases
- c.370+10C>A No assertion criteria SFTPA2-related disorder
- c.-16G>A No assertion criteria SFTPA2-related disorder
- c.-23-162G>C No assertion criteria SFTPA2-related disorder
- c.-23-177C>A No assertion criteria SFTPA2-related disorder
- c.-23-5G>T No assertion criteria SFTPA2-related disorder
- p.Ala101= No assertion criteria SFTPA2-related disorder
- p.Arg219Trp No assertion criteria SFTPA2-related disorder
- p.Asp24= No assertion criteria SFTPA2-related disorder
- p.Asp45= No assertion criteria SFTPA2-related disorder
- p.Asp48= No assertion criteria SFTPA2-related disorder
- p.Leu243= No assertion criteria SFTPA2-related disorder
- p.Phe177= No assertion criteria SFTPA2-related disorder
- p.Pro33= No assertion criteria SFTPA2-related disorder
- p.Val81Ile No assertion criteria SFTPA2-related disorder
Uncertain significance 48
- p.Glu21Lys Multiple submitters Inborn genetic diseases ⚠
- p.Phe177Tyr Multiple submitters interstitial lung disease 2 ⚠
- c.371-13C>G Single submitter
- c.-54+1G>C Single submitter interstitial lung disease 2
- p.Ala150Val Single submitter Inborn genetic diseases ⚠
- p.Ala15Asp Single submitter Inborn genetic diseases ⚠
- p.Ala15Thr Single submitter Inborn genetic diseases ⚠
- p.Ala163Val Single submitter Inborn genetic diseases ⚠
- p.Ala217Val Single submitter Inborn genetic diseases ⚠
- p.Ala78Asp Single submitter Inborn genetic diseases ⚠
- p.Arg122Lys Single submitter Inborn genetic diseases ⚠
- p.Arg199Cys Single submitter Inborn genetic diseases ⚠
- p.Arg199His Single submitter Inborn genetic diseases ⚠
- p.Arg219Leu Single submitter interstitial lung disease 2 ⚠
- p.Arg242Gln Single submitter ⚠
- p.Asn142Ser Single submitter ⚠
- p.Asn207Tyr Single submitter ⚠
- p.Asp45Asn Single submitter Inborn genetic diseases ⚠
- p.Glu106Asp Single submitter Inborn genetic diseases ⚠
- p.Glu172Asp Single submitter Inborn genetic diseases ⚠
- p.Glu226Lys Single submitter interstitial lung disease 2 ⚠
- p.Glu65Lys Single submitter Inborn genetic diseases ⚠
- p.Gly34Ser Single submitter ⚠
- p.Gly40Ser Single submitter Inborn genetic diseases ⚠
- p.Gly46Arg Single submitter Inborn genetic diseases ⚠
- p.Gly80Val Single submitter Inborn genetic diseases ⚠
- p.Ile131Leu Single submitter Inborn genetic diseases ⚠
- p.Ile245Val Single submitter Inborn genetic diseases ⚠
- p.Ile32Thr Single submitter Inborn genetic diseases ⚠
- p.Ile32Val Single submitter Inborn genetic diseases ⚠
- p.Leu189= Single submitter
- p.Leu99Phe Single submitter Inborn genetic diseases ⚠
- p.Lys51Glu Single submitter Inborn genetic diseases ⚠
- p.Met227Arg Single submitter ⚠
- p.Pro54Arg Single submitter Inborn genetic diseases ⚠
- p.Pro59Leu Single submitter Inborn genetic diseases ⚠
- p.Pro62Leu Single submitter Inborn genetic diseases ⚠
- p.Pro70His Single submitter Inborn genetic diseases ⚠
- p.Pro76Leu Single submitter Inborn genetic diseases ⚠
- p.Pro96Ser Single submitter Inborn genetic diseases ⚠
- p.Ser38Cys Single submitter ⚠
- p.Thr229Lys Single submitter Mullegama-Klein-Martinez syndrome ⚠
- p.Tyr181Cys Single submitter Mullegama-Klein-Martinez syndrome ⚠
- p.Tyr184Cys Single submitter interstitial lung disease 2 ⚠
- p.Tyr200Phe Single submitter Inborn genetic diseases ⚠
- p.Val134Ala Single submitter Inborn genetic diseases ⚠
- p.Gly86Glu No assertion criteria ⚠
- p.Pro56Leu No assertion criteria SFTPA2-related disorder ⚠